TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000030_1.0 # Protein # Selenoprotein W1 (SelW1) # Homo
sapiens # Complete
         (87 letters)

Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/genome
.fa 
           4245 sequences; 2,400,181,698 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH417973.1| Mustela putorius furo unplaced genomic scaffold s...    75   7e-13
gb|JH418100.1| Mustela putorius furo unplaced genomic scaffold s...    59   5e-08
gb|JH418030.1| Mustela putorius furo unplaced genomic scaffold s...    37   0.17 
gb|JH418094.1| Mustela putorius furo unplaced genomic scaffold s...    34   1.4  

>gb|JH417973.1| Mustela putorius furo unplaced genomic scaffold scaffold00001, whole genome
                shotgun sequence
          Length = 38702089

 Score = 74.7 bits (182), Expect = 7e-13
 Identities = 39/71 (54%), Positives = 47/71 (66%)
 Frame = +3

Query: 1        MALAVRVVYCGAUGXXXXXXXXXXXXEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSK 60
                MAL  +++YCGA G            EDE P  LD+ GEG P ATGFFEVMVA  L+HSK
Sbjct: 30569028 MALTNQIIYCGA*GYKSKNLQFKKL-EDEVPRCLDVYGEGIP*ATGFFEVMVAVTLVHSK 30569204

Query: 61       KKGDGYVDTES 71
                K+G+GY+D ES
Sbjct: 30569205 KRGNGYIDMES 30569237


>gb|JH418100.1| Mustela putorius furo unplaced genomic scaffold scaffold00128, whole genome
               shotgun sequence
          Length = 6262331

 Score = 58.5 bits (140), Expect = 5e-08
 Identities = 33/67 (49%), Positives = 35/67 (52%), Gaps = 32/67 (47%)
 Frame = -2

Query: 37      CGEGTPQATGFFEVMVAGKLIHSKK--------------------------------KGD 64
               CGEGTPQATGFFEVMVAGKL+HSKK                                +GD
Sbjct: 2981251 CGEGTPQATGFFEVMVAGKLVHSKKVWLAVCPSIFLVLFSGWLGIGISLLPSSSTPQRGD 2981072

Query: 65      GYVDTES 71
               GYVDTES
Sbjct: 2981071 GYVDTES 2981051


>gb|JH418030.1| Mustela putorius furo unplaced genomic scaffold scaffold00058, whole genome
               shotgun sequence
          Length = 11343100

 Score = 37.0 bits (84), Expect = 0.17
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +3

Query: 2       ALAVRVVYCGAUGXXXXXXXXXXXXEDEFPGRLDICGEGTPQATGFFEV 50
               AL V V+Y G+ G            E+EFP  LDIC +  PQAT + ++
Sbjct: 3633102 ALTVVVIYGGS*GYKGRYLNFKKKLENEFPRCLDICSKRAPQATSYVDM 3633248


>gb|JH418094.1| Mustela putorius furo unplaced genomic scaffold scaffold00122, whole genome
               shotgun sequence
          Length = 6602453

 Score = 33.9 bits (76), Expect = 1.4
 Identities = 16/23 (69%), Positives = 17/23 (73%)
 Frame = -2

Query: 39      EGTPQATGFFEVMVAGKLIHSKK 61
               E   QATG FEV V GKL+HSKK
Sbjct: 1026337 ERAAQATGEFEVFVDGKLVHSKK 1026269


  Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/geno
  me.fa
    Posted date:  Oct 24, 2012  8:21 PM
  Number of letters in database: 2,400,181,698
  Number of sequences in database:  4245
  
Lambda     K      H
   0.318    0.140    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,609,849
Number of Sequences: 4245
Number of extensions: 1160320
Number of successful extensions: 3163
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3079
Number of HSP's gapped (non-prelim): 236
length of query: 87
length of database: 800,060,566
effective HSP length: 62
effective length of query: 25
effective length of database: 799,797,376
effective search space: 19994934400
effective search space used: 19994934400
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)
