TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000116_1.0 # Protein # Selenoprotein T (SelT) # Mus
musculus # Complete
         (195 letters)

Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/genome
.fa 
           4245 sequences; 2,400,181,698 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH418502.1| Mustela putorius furo unplaced genomic scaffold s...   190   5e-89
gb|JH418016.1| Mustela putorius furo unplaced genomic scaffold s...   183   2e-86
gb|JH418022.1| Mustela putorius furo unplaced genomic scaffold s...    94   4e-18
gb|JH418337.1| Mustela putorius furo unplaced genomic scaffold s...    76   9e-13
gb|JH418062.1| Mustela putorius furo unplaced genomic scaffold s...    35   1.4  
gb|JH418148.1| Mustela putorius furo unplaced genomic scaffold s...    33   6.9  

>gb|JH418502.1| Mustela putorius furo unplaced genomic scaffold scaffold00530, whole
              genome shotgun sequence
          Length = 198950

 Score =  190 bits (482), Expect(2) = 5e-89
 Identities = 89/90 (98%), Positives = 89/90 (98%)
 Frame = +1

Query: 106    PFAFFGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESG 165
              P AFFGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESG
Sbjct: 198649 PHAFFGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESG 198828

Query: 166    HLPSMQQLVQILDNEMKLNVHMDSIPHHRS 195
              HLPSMQQLVQILDNEMKLNVHMDSIPHHRS
Sbjct: 198829 HLPSMQQLVQILDNEMKLNVHMDSIPHHRS 198918



 Score =  161 bits (407), Expect(2) = 5e-89
 Identities = 80/85 (94%), Positives = 82/85 (96%)
 Frame = +3

Query: 22     NLGGVPSKRLKMQYATGPLLKFQICVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPI 81
              NLGGVPSKRLKMQYATGPLLKFQICVS GYRRVFEEYM VISQRYPDIRIEGENYLPQPI
Sbjct: 198366 NLGGVPSKRLKMQYATGPLLKFQICVS*GYRRVFEEYMWVISQRYPDIRIEGENYLPQPI 198545

Query: 82     YRHIASFLSVFKLVLIGLIIVGKDP 106
               RH+A+FLSVFKLVLIGLIIVGKDP
Sbjct: 198546 DRHLAAFLSVFKLVLIGLIIVGKDP 198620


>gb|JH418016.1| Mustela putorius furo unplaced genomic scaffold scaffold00044, whole genome
               shotgun sequence
          Length = 12894818

 Score =  183 bits (465), Expect(2) = 2e-86
 Identities = 87/90 (96%), Positives = 88/90 (97%)
 Frame = -2

Query: 106     PFAFFGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESG 165
               P AFFGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESG
Sbjct: 4890115 PHAFFGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESG 4889936

Query: 166     HLPSMQQLVQILDNEMKLNVHMDSIPHHRS 195
               HLPSMQQLVQILDNEMKLNVHMDSIP+ RS
Sbjct: 4889935 HLPSMQQLVQILDNEMKLNVHMDSIPYLRS 4889846



 Score =  159 bits (401), Expect(2) = 2e-86
 Identities = 79/85 (92%), Positives = 81/85 (95%)
 Frame = -1

Query: 22      NLGGVPSKRLKMQYATGPLLKFQICVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPI 81
               NLG VPSKRLKMQYATGPLLKFQICVS GYRRVFEEYM VISQRYPDIRIEGENYLPQPI
Sbjct: 4890398 NLGSVPSKRLKMQYATGPLLKFQICVS*GYRRVFEEYMWVISQRYPDIRIEGENYLPQPI 4890219

Query: 82      YRHIASFLSVFKLVLIGLIIVGKDP 106
                RH+A+FLSVFKLVLIGLIIVGKDP
Sbjct: 4890218 DRHLAAFLSVFKLVLIGLIIVGKDP 4890144


>gb|JH418022.1| Mustela putorius furo unplaced genomic scaffold scaffold00050, whole
              genome shotgun sequence
          Length = 12139221

 Score = 93.6 bits (231), Expect = 4e-18
 Identities = 44/44 (100%), Positives = 44/44 (100%)
 Frame = -1

Query: 83     RHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKV 126
              RHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKV
Sbjct: 793113 RHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKV 792982



 Score = 90.5 bits (223), Expect = 4e-17
 Identities = 42/45 (93%), Positives = 44/45 (97%)
 Frame = -3

Query: 151    ITLNDVPVWSKLESGHLPSMQQLVQILDNEMKLNVHMDSIPHHRS 195
              I++ DVPVWSKLESGHLPSMQQLVQILDNEMKLNVHMDSIPHHRS
Sbjct: 789478 ISIIDVPVWSKLESGHLPSMQQLVQILDNEMKLNVHMDSIPHHRS 789344



 Score = 63.2 bits (152), Expect = 6e-09
 Identities = 29/29 (100%), Positives = 29/29 (100%)
 Frame = -1

Query: 126    VYACMMVFFLSNMIENQCMSTGAFEITLN 154
              VYACMMVFFLSNMIENQCMSTGAFEITLN
Sbjct: 790461 VYACMMVFFLSNMIENQCMSTGAFEITLN 790375



 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = -1

Query: 22     NLGGVPSKRLKMQYATGPLLKFQI 45
              NLGGVPSKRLKMQYATGPLLKFQI
Sbjct: 812763 NLGGVPSKRLKMQYATGPLLKFQI 812692


>gb|JH418337.1| Mustela putorius furo unplaced genomic scaffold scaffold00365, whole
              genome shotgun sequence
          Length = 859930

 Score = 75.9 bits (185), Expect = 9e-13
 Identities = 37/42 (88%), Positives = 37/42 (88%)
 Frame = -2

Query: 41     LKFQICVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIY 82
              L F   VS GYRRVFEEYMRVISQRYPDIRIEGENYLPQPIY
Sbjct: 859431 LLFFCSVS*GYRRVFEEYMRVISQRYPDIRIEGENYLPQPIY 859306


>gb|JH418062.1| Mustela putorius furo unplaced genomic scaffold scaffold00090, whole genome
               shotgun sequence
          Length = 8246203

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -3

Query: 127     YACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQL 173
               + C+ VF+LS +I   C S G  E+      V+ K ++G+L +M+ L
Sbjct: 6003791 FGCLDVFYLSGLILEVCFSNGYLELISLTAEVFIKQQNGYLGNMESL 6003651


>gb|JH418148.1| Mustela putorius furo unplaced genomic scaffold scaffold00176, whole genome
               shotgun sequence
          Length = 4090586

 Score = 33.1 bits (74), Expect = 6.9
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 107     FAFFGMQAPSIWQWGQENKVYACMMVFFL 135
               F+F    +P+ W WG++++   C+ +FFL
Sbjct: 3890471 FSFTAKSSPAEWPWGKKSQCQCCVFIFFL 3890385


  Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/geno
  me.fa
    Posted date:  Oct 24, 2012  8:21 PM
  Number of letters in database: 2,400,181,698
  Number of sequences in database:  4245
  
Lambda     K      H
   0.326    0.140    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 532,619,776
Number of Sequences: 4245
Number of extensions: 7943224
Number of successful extensions: 45355
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 118
Number of HSP's that attempted gapping in prelim test: 39202
Number of HSP's gapped (non-prelim): 18852
length of query: 195
length of database: 800,060,566
effective HSP length: 123
effective length of query: 72
effective length of database: 799,538,431
effective search space: 57566767032
effective search space used: 57566767032
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 73 (32.7 bits)
