TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000023_1.0 # Protein # Methionine-R-sufoxide reductase 3
(SelR3) # Homo sapiens # Complete
         (192 letters)

Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/genome
.fa 
           4245 sequences; 2,400,181,698 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH418020.1| Mustela putorius furo unplaced genomic scaffold s...    92   9e-18
gb|JH418032.1| Mustela putorius furo unplaced genomic scaffold s...    56   1e-06
gb|JH418216.1| Mustela putorius furo unplaced genomic scaffold s...    43   0.008
gb|JH418068.1| Mustela putorius furo unplaced genomic scaffold s...    38   0.27 
gb|JH418147.1| Mustela putorius furo unplaced genomic scaffold s...    36   0.78 
gb|JH418084.1| Mustela putorius furo unplaced genomic scaffold s...    36   1.0  
gb|JH418104.1| Mustela putorius furo unplaced genomic scaffold s...    34   3.0  

>gb|JH418020.1| Mustela putorius furo unplaced genomic scaffold scaffold00048, whole genome
                shotgun sequence
          Length = 12217663

 Score = 92.4 bits (228), Expect = 9e-18
 Identities = 43/57 (75%), Positives = 47/57 (82%), Gaps = 1/57 (1%)
 Frame = -2

Query: 137      QCGAHLGHIFDDGPRPTGKRYCINSAALSFTPADSSGTAEGGSGVASPAQ-ADKAEL 192
                QCGAHLGHIFDDGPRPTGKRYCINSA+LSFTPA+ S +AEG SG   P    D+AEL
Sbjct: 10625997 QCGAHLGHIFDDGPRPTGKRYCINSASLSFTPAEGSSSAEGNSGATPPLPVGDRAEL 10625827



 Score = 73.6 bits (179), Expect = 4e-12
 Identities = 32/36 (88%), Positives = 34/36 (94%)
 Frame = -1

Query: 102      SGSGWPSFHDVINSEAITFTDDFSYGMHRVETSCSQ 137
                S  GWPSFHDVI+S+AITFTDDFSYGMHRVETSCSQ
Sbjct: 10634299 SAPGWPSFHDVISSDAITFTDDFSYGMHRVETSCSQ 10634192



 Score = 71.2 bits (173), Expect = 2e-11
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = -1

Query: 36       RDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTE 68
                RDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTE
Sbjct: 10742647 RDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTE 10742549



 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 30/38 (78%), Positives = 31/38 (81%), Gaps = 2/38 (5%)
 Frame = -3

Query: 69       SAFEGEYTHHKDPGIYKCVVCGTPLFK--SETKFDSGS 104
                SAFEGEYTHHKDPGIYKCVVCGTPLFK   E   D G+
Sbjct: 10740926 SAFEGEYTHHKDPGIYKCVVCGTPLFK*VCEKPMDMGN 10740813


>gb|JH418032.1| Mustela putorius furo unplaced genomic scaffold scaffold00060, whole genome
               shotgun sequence
          Length = 10735860

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 22/32 (68%), Positives = 26/32 (81%)
 Frame = +1

Query: 137     QCGAHLGHIFDDGPRPTGKRYCINSAALSFTP 168
               QC AHLGH+F DGP P+G+R+CINS AL F P
Sbjct: 7280338 QCEAHLGHVFPDGPGPSGQRFCINSVALKFKP 7280433



 Score = 34.7 bits (78), Expect = 2.3
 Identities = 15/23 (65%), Positives = 20/23 (86%)
 Frame = +3

Query: 46      SQQELRKRLTPLQYHVTQEKGTE 68
               S+ E R++LTP Q++VTQEKGTE
Sbjct: 7269741 SKGEWRRKLTPEQFYVTQEKGTE 7269809



 Score = 34.7 bits (78), Expect = 2.3
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 71      FEGEYTHHKDPGIYKCVVCGTPLFK 95
               F G Y ++K+ G+Y CV C +PLF+
Sbjct: 7274064 FSGAYLNNKESGMYHCVCCDSPLFR 7274138



 Score = 33.1 bits (74), Expect = 6.6
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
 Frame = +2

Query: 96      SETKFDSGSGWPSFHDVINSEAITFTD-------DFSYGMHRVETSCSQCG 139
               S+ K+ SGSGWP+F +   +      D       D S G+ R E  C Q G
Sbjct: 7279472 SDHKYCSGSGWPAFSEAHGASGSDERDASILRRVDTSLGLTRTEVVCKQVG 7279624


>gb|JH418216.1| Mustela putorius furo unplaced genomic scaffold scaffold00244, whole genome
               shotgun sequence
          Length = 2628292

 Score = 42.7 bits (99), Expect = 0.008
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +1

Query: 81      PGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEAI 118
               PG+Y C  CG  LF S +K+   S WP+F + I+++++
Sbjct: 1076203 PGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSV 1076316



 Score = 38.5 bits (88), Expect = 0.16
 Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +3

Query: 132     ETSCSQCGAHLGHIF-DDGPRPTGKRYCINSAALSFTP 168
               + SC +CG  LGH F +DGP+P   R+ I S++L F P
Sbjct: 1076688 QVSCGRCGNGLGHEFLNDGPKPGQSRF*IFSSSLKFIP 1076801


>gb|JH418068.1| Mustela putorius furo unplaced genomic scaffold scaffold00096, whole genome
               shotgun sequence
          Length = 7939335

 Score = 37.7 bits (86), Expect = 0.27
 Identities = 24/70 (34%), Positives = 34/70 (48%)
 Frame = +1

Query: 116     EAITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYCINSAALSFTPADSSGTA 175
               + +TF +  ++G HR   +C Q GAHLG +     R T    C   A      A + G  
Sbjct: 2298868 DTVTFKEGLTWGEHRELMNCVQFGAHLGSLRPGAVRTTASERCAQRAREERPHARAWGL- 2299044

Query: 176     EGGSGVASPA 185
                GG+G ASP+
Sbjct: 2299045 -GGAG-ASPS 2299068


>gb|JH418147.1| Mustela putorius furo unplaced genomic scaffold scaffold00175, whole
              genome shotgun sequence
          Length = 4118961

 Score = 36.2 bits (82), Expect = 0.78
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 51     RKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVV 88
              +K+   + YH+ QEKG    F G   H K   IY CV+
Sbjct: 752695 KKKTAAMWYHLCQEKGKSKTFSGHLPHSKQGTIYFCVL 752808


>gb|JH418084.1| Mustela putorius furo unplaced genomic scaffold scaffold00112, whole genome
               shotgun sequence
          Length = 6899321

 Score = 35.8 bits (81), Expect = 1.0
 Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 4/121 (3%)
 Frame = +3

Query: 75      YTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEAITFTDDFSYGMHRVETS 134
               +TH     I   V C + LF  E  F +G   P       + + T+    S G      S
Sbjct: 6363372 HTHTHPVLILSPVSCFSSLFWPEASFRNGR*HPGQRGASPAPSPTWVWHRSEGSRSRRVS 6363551

Query: 135     CSQCGAHLGHIFDDGPRPTGKRYCINSAALSFTPADSSG----TAEGGSGVASPAQADKA 190
               C+  G  LGH+  D    +  R    ++A+        G     A+GG G AS AQ  +A
Sbjct: 6363552 CTDEGLPLGHVCIDSSLCSTGRPRRGTSAICVWCGPHMGPWALNAQGGGGGASGAQLTQA 6363731

Query: 191     E 191
               E
Sbjct: 6363732 E 6363734


>gb|JH418104.1| Mustela putorius furo unplaced genomic scaffold scaffold00132, whole genome
               shotgun sequence
          Length = 6141178

 Score = 34.3 bits (77), Expect = 3.0
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -2

Query: 78      HKDPGIYKCVVCGTPLFKSETKFDSGSG-WPSFHDVINSEAITFTDDFSYGMHRVETSCS 136
               H  P +Y C   G P+   +  +DSG   W  F+ +     I + DD      R  ++CS
Sbjct: 5234841 HMQPCVYICTCLGDPIVDID*TYDSGHACWDFFNIMKCHITIVWEDDTLLSKRRQSSTCS 5234662

Query: 137     QCGAHLGHIFD 147
               +    L +++D
Sbjct: 5234661 EYPIFL*NLYD 5234629


  Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/geno
  me.fa
    Posted date:  Oct 24, 2012  8:21 PM
  Number of letters in database: 2,400,181,698
  Number of sequences in database:  4245
  
Lambda     K      H
   0.316    0.132    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 520,051,577
Number of Sequences: 4245
Number of extensions: 8120351
Number of successful extensions: 29778
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 120
Number of HSP's that attempted gapping in prelim test: 25366
Number of HSP's gapped (non-prelim): 12566
length of query: 192
length of database: 800,060,566
effective HSP length: 123
effective length of query: 69
effective length of database: 799,538,431
effective search space: 55168151739
effective search space used: 55168151739
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 73 (32.7 bits)
