TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000021_1.0 # Protein # Methionine-R-sufoxide reductase 1
(SelR1) # Homo sapiens # Complete
         (116 letters)

Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/genome
.fa 
           4245 sequences; 2,400,181,698 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH418216.1| Mustela putorius furo unplaced genomic scaffold s...   106   2e-22
gb|JH418125.1| Mustela putorius furo unplaced genomic scaffold s...    82   6e-15
gb|JH418020.1| Mustela putorius furo unplaced genomic scaffold s...    37   0.17 
gb|JH418712.1| Mustela putorius furo unplaced genomic scaffold s...    35   0.63 
gb|JH418623.1| Mustela putorius furo unplaced genomic scaffold s...    33   3.1  
gb|JH417994.1| Mustela putorius furo unplaced genomic scaffold s...    33   3.1  
gb|JH418061.1| Mustela putorius furo unplaced genomic scaffold s...    32   4.1  
gb|JH418349.1| Mustela putorius furo unplaced genomic scaffold s...    32   5.3  
gb|JH418046.1| Mustela putorius furo unplaced genomic scaffold s...    32   5.3  
gb|JH418032.1| Mustela putorius furo unplaced genomic scaffold s...    32   5.3  
gb|JH418017.1| Mustela putorius furo unplaced genomic scaffold s...    32   7.0  
gb|JH418000.1| Mustela putorius furo unplaced genomic scaffold s...    32   7.0  
gb|JH417979.1| Mustela putorius furo unplaced genomic scaffold s...    32   7.0  
gb|JH418131.1| Mustela putorius furo unplaced genomic scaffold s...    31   9.1  
gb|JH418113.1| Mustela putorius furo unplaced genomic scaffold s...    31   9.1  

>gb|JH418216.1| Mustela putorius furo unplaced genomic scaffold scaffold00244, whole genome
               shotgun sequence
          Length = 2628292

 Score =  106 bits (264), Expect = 2e-22
 Identities = 55/89 (61%), Positives = 62/89 (69%)
 Frame = +1

Query: 18      PGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKVSCGKCGNG 77
               PGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPE N  +ALKV        
Sbjct: 1076203 PGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPERNSPDALKVRA-----A 1076367

Query: 78      LGHEFLNDGPKPGQSRFUIFSSSLKFVPK 106
               +G  +   G  PG++   +  S   F P+
Sbjct: 1076368 VGRSW---GSGPGRA*GLVIPSFFVFTPQ 1076445



 Score = 83.6 bits (205), Expect = 2e-15
 Identities = 36/43 (83%), Positives = 41/43 (95%)
 Frame = +3

Query: 66      ALKVSCGKCGNGLGHEFLNDGPKPGQSRFUIFSSSLKFVPKGK 108
               + +VSCG+CGNGLGHEFLNDGPKPGQSRF IFSSSLKF+PKG+
Sbjct: 1076682 SFQVSCGRCGNGLGHEFLNDGPKPGQSRF*IFSSSLKFIPKGE 1076810



 Score = 43.9 bits (102), Expect = 0.001
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = +2

Query: 1       MSFCSFFGGEVFQNHFEPGV 20
               MSFCSF GGE+FQNHFEPG+
Sbjct: 1074575 MSFCSFSGGEIFQNHFEPGM 1074634


>gb|JH418125.1| Mustela putorius furo unplaced genomic scaffold scaffold00153, whole
              genome shotgun sequence
          Length = 4842529

 Score = 81.6 bits (200), Expect = 6e-15
 Identities = 56/109 (51%), Positives = 62/109 (56%), Gaps = 3/109 (2%)
 Frame = +3

Query: 9      GEVFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHAD---SVAKRPEHNRSE 65
              GEVFQNHFE  VYV  K   ELF S  KY   +     TET+H     SV    +     
Sbjct: 139989 GEVFQNHFESLVYVSTKYDCELFFSC*KYERVA---TLTETMHEIVWLSVRSTIQ----- 140144

Query: 66     ALKVSCGKCGNGLGHEFLNDGPKPGQSRFUIFSSSLKFVPKGKETSASQ 114
               LKVSCG+CG GLGH+ LNDG K G+  F IFS  LKF  K K  SASQ
Sbjct: 140145 -LKVSCGRCGLGLGHKLLNDGAKSGKPCF*IFSHLLKFNWKCK*ASASQ 140288


>gb|JH418020.1| Mustela putorius furo unplaced genomic scaffold scaffold00048, whole genome
                shotgun sequence
          Length = 12217663

 Score = 37.0 bits (84), Expect = 0.17
 Identities = 19/40 (47%), Positives = 25/40 (62%)
 Frame = -2

Query: 73       KCGNGLGHEFLNDGPKPGQSRFUIFSSSLKFVPKGKETSA 112
                +CG  LGH F +DGP+P   R+ I S+SL F P    +SA
Sbjct: 10625997 QCGAHLGHIF-DDGPRPTGKRYCINSASLSFTPAEGSSSA 10625881



 Score = 31.6 bits (70), Expect = 7.0
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 3        FCSFFGGEVFQNHFEPGVYVCAKCGYELF 31
                F S F GE + +H +PG+Y C  CG  LF
Sbjct: 10740932 FISAFEGE-YTHHKDPGIYKCVVCGTPLF 10740849


>gb|JH418712.1| Mustela putorius furo unplaced genomic scaffold scaffold00744, whole
            genome shotgun sequence
          Length = 42805

 Score = 35.0 bits (79), Expect = 0.63
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -1

Query: 68   KVSCGKCGNGLGHEFLNDGPKPG 90
            K+SC + G GLGHE L + P PG
Sbjct: 8761 KISCQRPGTGLGHEILEEAPSPG 8693


>gb|JH418623.1| Mustela putorius furo unplaced genomic scaffold scaffold00652, whole
             genome shotgun sequence
          Length = 87438

 Score = 32.7 bits (73), Expect = 3.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 68    KVSCGKCGNGLGHEFLNDGPKPG 90
             K+SC + G GLG+E L + P PG
Sbjct: 53683 KISCQRPGTGLGYEILEEAPSPG 53615


>gb|JH417994.1| Mustela putorius furo unplaced genomic scaffold scaffold00022, whole genome
                shotgun sequence
          Length = 19604161

 Score = 32.7 bits (73), Expect = 3.1
 Identities = 20/77 (25%), Positives = 33/77 (42%)
 Frame = -3

Query: 28       YELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKVSCGKCGNGLGHEFLNDGP 87
                Y+L   R    +   W    E +  D + +   H R    K + G CG G+G  +L  G 
Sbjct: 15255653 YDLHDMRKWRCNVGVWGVGKEKMKEDGIGREKNHERLNLTKQAEGCCGEGVGRGWLGYGH 15255474

Query: 88       KPGQSRFUIFSSSLKFV 104
                  G   + +  S++K+V
Sbjct: 15255473 WGG---YVL*LSAVKYV 15255432


>gb|JH418061.1| Mustela putorius furo unplaced genomic scaffold scaffold00089, whole genome
               shotgun sequence
          Length = 8322713

 Score = 32.3 bits (72), Expect = 4.1
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +2

Query: 11      VFQNHFEPGVYVCAKCGYELFSSRSKYAH--SSPWP 44
               +FQNHF+P V   +KC   LF  R  ++   SSP P
Sbjct: 7874855 LFQNHFDPFVLFLSKCSVALFCRRCTFSAKLSSPCP 7874962


>gb|JH418349.1| Mustela putorius furo unplaced genomic scaffold scaffold00377, whole
              genome shotgun sequence
          Length = 766063

 Score = 32.0 bits (71), Expect = 5.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 68     KVSCGKCGNGLGHEFLNDGPKPG 90
              K+SC + G  LGHE L + P PG
Sbjct: 655186 KISCQRPGTWLGHEILEEAPSPG 655254


>gb|JH418046.1| Mustela putorius furo unplaced genomic scaffold scaffold00074, whole genome
               shotgun sequence
          Length = 9367240

 Score = 32.0 bits (71), Expect = 5.3
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
 Frame = +2

Query: 14      NHFEPGVYVCAKCGYELFSSRSKYAHSSP---WPAFTETIHADSVAKRPEHNRSEALKVS 70
               N + PGV+ CA C   L +   K  H  P   WP     +   +V K+ E  R E    S
Sbjct: 4340630 NPYLPGVFRCASCMNALHTHTQKTMHMPPLLQWPWLYPNL*FPAVVKKLELTRGETHSAS 4340809

Query: 71      -CGKCGNGLG 79
                 G C +  G
Sbjct: 4340810 QVGTCVSTAG 4340839


>gb|JH418032.1| Mustela putorius furo unplaced genomic scaffold scaffold00060, whole genome
               shotgun sequence
          Length = 10735860

 Score = 32.0 bits (71), Expect = 5.3
 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 19/91 (20%)
 Frame = +1

Query: 35      SKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKVSCGK-------------------CG 75
               ++ +H +P  +F   +H+  +   P  +R  A      +                   C 
Sbjct: 7280167 NQLSHQAPLHSFLSYVHSAGMDFSPHRHRIGAATWGSSRFT*RTLSRWRNDRGFSPLQCE 7280346

Query: 76      NGLGHEFLNDGPKPGQSRFUIFSSSLKFVPK 106
                 LGH F  DGP P   RF I S +LKF P+
Sbjct: 7280347 AHLGHVF-PDGPGPSGQRFCINSVALKFKPR 7280436


>gb|JH418017.1| Mustela putorius furo unplaced genomic scaffold scaffold00045, whole genome
               shotgun sequence
          Length = 12738967

 Score = 31.6 bits (70), Expect = 7.0
 Identities = 30/95 (31%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
 Frame = +1

Query: 27      GYELFSSRSKYAHSSPW-----PAFTETIHADSVAKRPEHNRSEALKVSCGKCGNGLGHE 81
               G +L   RSK A +SP+      A  +   A  V +RP H     +  S G      G  
Sbjct: 2019646 GNQLR*GRSKQARASPFWSLAPAAEVKAQGARRVTQRPRHACPPRVPASAG------GRP 2019807

Query: 82      FLNDGPKPGQSRFUIFSSSLKFVPKGKETSASQGH 116
                L  GP P  +R    SS  + VPK +   A +GH
Sbjct: 2019808 PLRPGPAPRTARVPPVSSGTQ*VPKTRPPEA-EGH 2019909


>gb|JH418000.1| Mustela putorius furo unplaced genomic scaffold scaffold00028, whole genome
               shotgun sequence
          Length = 16283098

 Score = 31.6 bits (70), Expect = 7.0
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 59      PEHNRSEALKVSCGKCGNGLGHEFLNDGPKP 89
               PE NR+ A       CGNG G + L+ GP P
Sbjct: 3951934 PEKNRTHASPFLLPSCGNGKGAQSLHRGPNP 3952026


>gb|JH417979.1| Mustela putorius furo unplaced genomic scaffold scaffold00007, whole
              genome shotgun sequence
          Length = 28224589

 Score = 31.6 bits (70), Expect = 7.0
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
 Frame = +2

Query: 4      CSFFGGE-----VFQNH--FEPGVYVCAKCGYELFSSRSKYAHSSP 42
              CSFFGGE     +F  H    PGV VC   G  L + +  Y++ SP
Sbjct: 892112 CSFFGGELF*FFIFYKHIFLSPGVQVCESPGL-LLTGKILYSYPSP 892246


>gb|JH418131.1| Mustela putorius furo unplaced genomic scaffold scaffold00159, whole genome
               shotgun sequence
          Length = 4717724

 Score = 31.2 bits (69), Expect = 9.1
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
 Frame = -3

Query: 29      ELFSSRSKYAHSSPWPAFTETIHADSVAKR--------PEHNRSEALKVSCGKCGNGLGH 80
               E+F+ RSK  HS   P + + + ++ + +R        P+   S  + VS    G G G 
Sbjct: 4303155 EIFNKRSKSGHSCLVPKWEDKVGSNKLERRVFVELTL*PQRRHSSLVLVSISG-GRGWGE 4302979

Query: 81      EFLNDGPKPGQSRFUIFSSSLK 102
                 +   P+  + +  +FS S++
Sbjct: 4302978 PVMKQAPQSLEKQPTVFSCSIE 4302913


>gb|JH418113.1| Mustela putorius furo unplaced genomic scaffold scaffold00141, whole genome
               shotgun sequence
          Length = 5565660

 Score = 31.2 bits (69), Expect = 9.1
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
 Frame = -3

Query: 32      SSRSKYAHSS-PWPAFTETIHADSVAKRP-----EHNRSEALKVSCGKCGNGLGHEFLND 85
               S R +  H   PWP  +  I  + V  RP     +HNRS +  +   + G+  G      
Sbjct: 4065412 SRRLEECHQQLPWPVLSTNIDENFVTNRPKTQWSKHNRSSSFSLKTSRMGSDSG------ 4065251

Query: 86      GPKPGQS 92
               GP+  QS
Sbjct: 4065250 GPRSAQS 4065230


  Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/geno
  me.fa
    Posted date:  Oct 24, 2012  8:21 PM
  Number of letters in database: 2,400,181,698
  Number of sequences in database:  4245
  
Lambda     K      H
   0.318    0.134    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 441,826,826
Number of Sequences: 4245
Number of extensions: 7420196
Number of successful extensions: 29106
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 163
Number of HSP's that attempted gapping in prelim test: 22056
Number of HSP's gapped (non-prelim): 15893
length of query: 116
length of database: 800,060,566
effective HSP length: 91
effective length of query: 25
effective length of database: 799,674,271
effective search space: 19991856775
effective search space used: 19991856775
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)
