TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000019_1.0 # Protein # Selenoprotein O (SelO) # Homo
sapiens # Complete
         (669 letters)

Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/genome
.fa 
           4245 sequences; 2,400,181,698 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH418184.1| Mustela putorius furo unplaced genomic scaffold s...   137   2e-51
gb|JH418032.1| Mustela putorius furo unplaced genomic scaffold s...    73   4e-11

>gb|JH418184.1| Mustela putorius furo unplaced genomic scaffold scaffold00212, whole genome
               shotgun sequence
          Length = 3266212

 Score =  137 bits (345), Expect = 2e-30
 Identities = 68/102 (66%), Positives = 75/102 (73%)
 Frame = +3

Query: 350     GPFGFLDRYDPDHVCNASDNTGRYAYSKQPEVCRWNLRKXXXXXXXXXXXXXXXXILAEE 409
               GP     RYDP+HVCNASDNTGRYAYSKQPEVC+WNL+K                ILAEE
Sbjct: 2762799 GPLVPCGRYDPNHVCNASDNTGRYAYSKQPEVCKWNLQKLAEALEPELPREQGEAILAEE 2762978

Query: 410     FDAEFQRHYLQKMRRKLGLVQVELEEDGALVSKLLETMHLTG 451
               FD EF+ HYLQKMRRKLGLV  EL +D ALV++LLETMHLTG
Sbjct: 2762979 FDTEFRCHYLQKMRRKLGLVCTELPDDEALVARLLETMHLTG 2763104



 Score =  133 bits (334), Expect = 4e-29
 Identities = 62/69 (89%), Positives = 67/69 (97%)
 Frame = +3

Query: 185     RQADGRKVLRSSIREFLCSEAMFHLGVPTTRAGACVTSESTVVRDVFYDGNPKYEQCTVV 244
               RQADGRKVLRSSIREFLCSEAMFHLG+PTTRAGACVTS+S V RDVFYDGNPKYE+CTVV
Sbjct: 2760195 RQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGACVTSQSVVARDVFYDGNPKYEKCTVV 2760374

Query: 245     LRVASTFIR 253
               LR+ASTF+R
Sbjct: 2760375 LRIASTFLR 2760401



 Score =  119 bits (298), Expect = 5e-25
 Identities = 61/79 (77%), Positives = 62/79 (78%)
 Frame = +3

Query: 253     RFGSFEIFKSADEHTGRAGPSVGRNDIRVQLLDYVISSFYPEIQAAHASDSVQRNAAFFR 312
               RFGSFEIFKSADEHTGR GPSVGRNDIR Q+LDYVISSFYPEIQAAHA D  QRNAAFFR
Sbjct: 2761539 RFGSFEIFKSADEHTGREGPSVGRNDIRAQMLDYVISSFYPEIQAAHAEDRAQRNAAFFR 2761718

Query: 313     EVTRRTARMVAEWQCVGFC 331
               EV     R  A W C   C
Sbjct: 2761719 EVRVAAHRHPACW-CDSVC 2761772



 Score =  102 bits (254), Expect(3) = 2e-51
 Identities = 51/70 (72%), Positives = 57/70 (81%), Gaps = 2/70 (2%)
 Frame = +1

Query: 495     RPQMDP--RQLSMMLMLAQSNPQLFALMGTRAGIARELERVEQQSRLEQLSAAELQSRNQ 552
               RP   P  RQLSMML+LAQSNPQLFALMGTRA +  ELERVEQQSRL+QLS A+L S+N+
Sbjct: 2766580 RPHAAPLRRQLSMMLVLAQSNPQLFALMGTRASVTEELERVEQQSRLQQLSPAQLLSKNR 2766759

Query: 553     GHWADWLQAY 562
                HW DWLQ Y
Sbjct: 2766760 AHWTDWLQEY 2766789



 Score = 97.8 bits (242), Expect = 2e-18
 Identities = 45/64 (70%), Positives = 49/64 (76%)
 Frame = +1

Query: 294     EIQAAHASDSVQRNAAFFREVTRRTARMVAEWQCVGFCHGVLNTDNMSILGLTIDYGPFG 353
               E+            A+   +VTRRTARMVAEWQCVGFCHGVLNTDNMSI+GLTIDYGPFG
Sbjct: 2762302 ELSLGRGGQGRGHRASVLFQVTRRTARMVAEWQCVGFCHGVLNTDNMSIVGLTIDYGPFG 2762481

Query: 354     FLDR 357
               FLDR
Sbjct: 2762482 FLDR 2762493



 Score = 93.6 bits (231), Expect(3) = 2e-51
 Identities = 44/53 (83%), Positives = 46/53 (86%)
 Frame = +3

Query: 563     RARLDKDLEGAGDAAAWQAEHVRVMHANNPKYVLRNYIAQNAIEAAERGDFSE 615
               RARL+KD EG GD  AWQAE  R+MHANNPKYVLRNYIAQNAIEAAE GDFSE
Sbjct: 2766882 RARLEKDREGMGDQDAWQAERTRIMHANNPKYVLRNYIAQNAIEAAENGDFSE 2767040



 Score = 82.4 bits (202), Expect = 7e-14
 Identities = 42/57 (73%), Positives = 44/57 (77%)
 Frame = +1

Query: 445     ETMHLTGADFTNTFYLLSSFPVELESPGLAEFLARLMEQCASLEELRLAFRPQMDPR 501
               E   + GADFTNTFYLLSSFPV  E  GL  FLA L  QCASLEEL+LAFRPQMDPR
Sbjct: 2765641 EQWRVPGADFTNTFYLLSSFPVGPEPLGLPAFLAALTAQCASLEELKLAFRPQMDPR 2765811



 Score = 53.5 bits (127), Expect(3) = 2e-51
 Identities = 31/55 (56%), Positives = 32/55 (58%)
 Frame = +1

Query: 615     EVRRVLKLLETPYHCXXXXXXXXXXXXXXXXXXRQRSYSSKPPLWAAELCVTUSS 669
               +VRRVLKLLETPYH                      SYSSKPPLWAAELCVT SS
Sbjct: 2767141 QVRRVLKLLETPYHRDGEPTEALGATGADSGG---NSYSSKPPLWAAELCVT*SS 2767296


>gb|JH418032.1| Mustela putorius furo unplaced genomic scaffold scaffold00060, whole genome
                shotgun sequence
          Length = 10735860

 Score = 73.2 bits (178), Expect = 4e-11
 Identities = 50/131 (38%), Positives = 60/131 (45%), Gaps = 59/131 (45%)
 Frame = -1

Query: 145      FGQFAGQLGDGAA-----------MYLGEV------------------CTATGERWELQL 175
                FG +AGQLGDG A           M+ G +                  C   GE+WELQL
Sbjct: 10242441 FGIWAGQLGDGRAHLIGIYMNRYHMFFGIIAFLLNSNMNLLILRFLCCC*RQGEKWELQL 10242262

Query: 176      KGAGPTPFSRQA------------------------------DGRKVLRSSIREFLCSEA 205
                KG+G TP+SR +                              DGR VLRSS+REFLCSEA
Sbjct: 10242261 KGSGKTPYSRYSWYFF*SSE*KLMLSSLQLKIFLSLI*PRNGDGRAVLRSSVREFLCSEA 10242082

Query: 206      MFHLGVPTTRA 216
                M  LG+PT+RA
Sbjct: 10242081 MHSLGIPTSRA 10242049



 Score = 50.1 bits (118), Expect = 4e-04
 Identities = 20/36 (55%), Positives = 25/36 (69%)
 Frame = -1

Query: 325      WQCVGFCHGVLNTDNMSILGLTIDYGPFGFLDRYDP 360
                W       GV NTDN S+L +TIDYGPFGF++ Y+P
Sbjct: 10234107 WNLFVVVSGVCNTDNFSLLSITIDYGPFGFMEAYNP 10234000



 Score = 43.5 bits (101), Expect = 0.038
 Identities = 19/36 (52%), Positives = 27/36 (75%)
 Frame = -2

Query: 582      EHVRVMHANNPKYVLRNYIAQNAIEAAERGDFSEVR 617
                +H     A NP+YVL+N++A++A+  AER DFSEVR
Sbjct: 10217066 KHAFPPEAVNPRYVLKNWMAESAVRKAERNDFSEVR 10216959


  Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/geno
  me.fa
    Posted date:  Oct 24, 2012  8:21 PM
  Number of letters in database: 2,400,181,698
  Number of sequences in database:  4245
  
Lambda     K      H
   0.322    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,646,492,627
Number of Sequences: 4245
Number of extensions: 22536434
Number of successful extensions: 103678
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 94743
Number of HSP's gapped (non-prelim): 26401
length of query: 669
length of database: 800,060,566
effective HSP length: 137
effective length of query: 532
effective length of database: 799,479,001
effective search space: 425322828532
effective search space used: 425322828532
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)
