TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000114_1.0 # Protein # Selenoprotein N (SelN) # Mus
musculus # Complete
         (557 letters)

Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/genome
.fa 
           4245 sequences; 2,400,181,698 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH417973.1| Mustela putorius furo unplaced genomic scaffold s...   124   1e-26
gb|JH418004.1| Mustela putorius furo unplaced genomic scaffold s...    36   4.8  

>gb|JH417973.1| Mustela putorius furo unplaced genomic scaffold scaffold00001, whole genome
                shotgun sequence
          Length = 38702089

 Score =  124 bits (312), Expect = 1e-26
 Identities = 60/64 (93%), Positives = 62/64 (96%)
 Frame = -3

Query: 331      MELEAVGPSVPSVILDEDGNMIDSRLPSGEPLQFVFEEIKWHQELSWEEAARRLEVAMYP 390
                MELEA+GPSVPS+ILDEDGNMIDSR PSGEPLQFVFEEIKW QELSWEEAARRLEVAMYP
Sbjct: 19963331 MELEALGPSVPSMILDEDGNMIDSRPPSGEPLQFVFEEIKWQQELSWEEAARRLEVAMYP 19963152

Query: 391      FKKV 394
                FKKV
Sbjct: 19963151 FKKV 19963140



 Score =  105 bits (263), Expect = 5e-21
 Identities = 47/47 (100%), Positives = 47/47 (100%)
 Frame = -2

Query: 257      RIHAEFQLSEPPDFPFWFSPGQFTGHIILSKDATHIRDFRLFVPNHR 303
                RIHAEFQLSEPPDFPFWFSPGQFTGHIILSKDATHIRDFRLFVPNHR
Sbjct: 19965522 RIHAEFQLSEPPDFPFWFSPGQFTGHIILSKDATHIRDFRLFVPNHR 19965382



 Score = 97.8 bits (242), Expect = 1e-18
 Identities = 48/72 (66%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
 Frame = -1

Query: 146      VSRLALSGLRNWTTXXXXXXXXXXXXXXXXXXXXGQ-ELGQPWWIIPGELSVFTGYLSNN 204
                VSRLALSGLRNWTT                    GQ ELG+PWWI+P ELSVFTGYLSNN
Sbjct: 19966627 VSRLALSGLRNWTTAALPSAVFAARHFRPFLPPRGQVELGEPWWIVPSELSVFTGYLSNN 19966448

Query: 205      RFYPPPPKGKEV 216
                RFYPPPPKGKEV
Sbjct: 19966447 RFYPPPPKGKEV 19966412



 Score = 89.7 bits (221), Expect = 4e-16
 Identities = 47/66 (71%), Positives = 50/66 (75%), Gaps = 4/66 (6%)
 Frame = -3

Query: 208      PPPPKGKEVIIHRLLSMFHPRPFVKTRFAPQGTVACLTAISDSYYTVMFRI----HAEFQ 263
                PP P   +VIIHRLLSMFHPRPFVKTRFAPQG VACLTAISD YYTVMFR     H  + 
Sbjct: 19966214 PPAP---QVIIHRLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTVMFRCVALGHPSWP 19966044

Query: 264      LSEPPD 269
                LS+  D
Sbjct: 19966043 LSQAGD 19966026



 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 33/37 (89%), Positives = 35/37 (94%)
 Frame = -2

Query: 66       KVLGTDGLFLFSSLDTDQDMYISPEEFKPIAEKLTGS 102
                K LG +GLFLFSSLDTDQDMYISPEEFKPIAEKLTG+
Sbjct: 19972632 KALGAEGLFLFSSLDTDQDMYISPEEFKPIAEKLTGT 19972522



 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 34/50 (68%), Positives = 41/50 (82%)
 Frame = -3

Query: 386      VAMYPFKKVNYLPFTEAFDRARAEKKLVHSILLWGALDDQSCUGSGRTLR 435
                V+++P  +V YLPFTEAFD+A+A+ KLVHSILLWGALDDQSC G G   R
Sbjct: 19962815 VSLWP--QVTYLPFTEAFDQAKAKNKLVHSILLWGALDDQSC*GEGDPTR 19962672



 Score = 70.1 bits (170), Expect(2) = 4e-24
 Identities = 34/38 (89%), Positives = 36/38 (94%)
 Frame = -3

Query: 429      GSGRTLRETVLESPPILTLLNESFISTWSLVKELEDLQ 466
                GSGRTLRETVLES PI+ LLNESFISTWSLV+ELEDLQ
Sbjct: 19961633 GSGRTLRETVLESSPIIALLNESFISTWSLVRELEDLQ 19961520



 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 33/43 (76%), Positives = 35/43 (81%)
 Frame = -1

Query: 501      VHHINANYFLDITSMKPEDMENNNVXXXXXXXEDPSTATYMQF 543
                VHHINANYFLDITSMKPED+E NN+       EDPSTATYMQF
Sbjct: 19960156 VHHINANYFLDITSMKPEDVE-NNIFSFSSTFEDPSTATYMQF 19960031



 Score = 66.6 bits (161), Expect(2) = 4e-24
 Identities = 30/36 (83%), Positives = 32/36 (88%)
 Frame = -2

Query: 466      QTQQENPLHRQLAGLHLEKYSFPVEMMICLPNGTVV 501
                Q  QENP H++LA LHLEKYSFPVEMMICLPNGTVV
Sbjct: 19961430 QDSQENPSHKKLADLHLEKYSFPVEMMICLPNGTVV 19961323



 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 26/32 (81%), Positives = 30/32 (93%)
 Frame = -2

Query: 303      RSLNVDMEWLYGASETSNMEVDIGYVPQMELE 334
                RSLNVDMEWLYGASE+SNMEVDIGY+PQ+  +
Sbjct: 19963788 RSLNVDMEWLYGASESSNMEVDIGYIPQVSTQ 19963693



 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 33/62 (53%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
 Frame = -3

Query: 87       ISPEEFKPIAEK-LTGSVPVANYXXXXXXXXXXXXTLTIEARFQPLLMETMTKSKDGFLG 145
                + PE   P+ +  L GS P A+Y            TLTIEARFQPL+ E+MTKSKDGFLG
Sbjct: 19969568 LQPEGRTPLQQLCLPGSTPAASYEDEELPLDPSEETLTIEARFQPLIPESMTKSKDGFLG 19969389

Query: 146      VS 147
                VS
Sbjct: 19969388 VS 19969383


>gb|JH418004.1| Mustela putorius furo unplaced genomic scaffold scaffold00032, whole genome
                shotgun sequence
          Length = 15264983

 Score = 36.2 bits (82), Expect = 4.8
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
 Frame = -1

Query: 426      SCUGSGRTLRETVLESPPILTLLNE-----SFISTWSLVKELEDLQTQQENPLHRQLAGL 480
                +C G  +  R  +L  PP+ + LN      S++ +WS +  L+   T    P H  L GL
Sbjct: 11581517 TCRGPAKAPRP-LLSVPPLPSTLNPGSNGPSYVFSWSALHLLKARPTLNSTPSHTHLLGL 11581341

Query: 481      HLEKYSFPVEMMICLPNGTVV 501
                 L+    P ++ + LP   +V
Sbjct: 11581340 PLQTTLLPYQLSMPLPYSNLV 11581278


  Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/geno
  me.fa
    Posted date:  Oct 24, 2012  8:21 PM
  Number of letters in database: 2,400,181,698
  Number of sequences in database:  4245
  
Lambda     K      H
   0.319    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,439,978,621
Number of Sequences: 4245
Number of extensions: 23066848
Number of successful extensions: 90038
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 92
Number of HSP's that attempted gapping in prelim test: 81049
Number of HSP's gapped (non-prelim): 29769
length of query: 557
length of database: 800,060,566
effective HSP length: 136
effective length of query: 421
effective length of database: 799,483,246
effective search space: 336582446566
effective search space used: 336582446566
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 79 (35.0 bits)
