TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000111_1.0 # Protein # Selenoprotein I (SelI) # Mus
musculus # Complete
         (402 letters)

Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/genome
.fa 
           4245 sequences; 2,400,181,698 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH417990.1| Mustela putorius furo unplaced genomic scaffold s...   148   4e-34
gb|JH418153.1| Mustela putorius furo unplaced genomic scaffold s...    61   1e-07
gb|JH417981.1| Mustela putorius furo unplaced genomic scaffold s...    60   2e-07
gb|JH418171.1| Mustela putorius furo unplaced genomic scaffold s...    39   0.47 
gb|JH418051.1| Mustela putorius furo unplaced genomic scaffold s...    37   1.4  
gb|JH418013.1| Mustela putorius furo unplaced genomic scaffold s...    37   1.4  
gb|JH418012.1| Mustela putorius furo unplaced genomic scaffold s...    37   1.4  
gb|JH418129.1| Mustela putorius furo unplaced genomic scaffold s...    36   3.0  
gb|JH418176.1| Mustela putorius furo unplaced genomic scaffold s...    35   5.2  
gb|JH418125.1| Mustela putorius furo unplaced genomic scaffold s...    35   5.2  
gb|JH417983.1| Mustela putorius furo unplaced genomic scaffold s...    35   5.2  
gb|JH417997.1| Mustela putorius furo unplaced genomic scaffold s...    35   8.9  
gb|JH417976.1| Mustela putorius furo unplaced genomic scaffold s...    35   8.9  

>gb|JH417990.1| Mustela putorius furo unplaced genomic scaffold scaffold00018, whole
              genome shotgun sequence
          Length = 20345670

 Score =  148 bits (374), Expect = 4e-34
 Identities = 77/130 (59%), Positives = 84/130 (64%)
 Frame = -2

Query: 66     VFNFLLLTYFDPDFYASAPGHKHVPDWVWIVVGILNFAAYTLDGVDGKQARRTNSSTPLG 125
              +F F+ L +   DF  +       P   W  V +        DGVDGKQARRTNSSTPLG
Sbjct: 366035 LFCFVFLQFIKDDFLHTGTDVDLFP---WQCVSVA-------DGVDGKQARRTNSSTPLG 365886

Query: 126    ELFDHGLDSWSCVYFVVTVYSIFGRGPTGXXXXXXXXXXXXXXXXXILSHWEKYNTGVLF 185
              ELFDHGLDSWSCVYFVVTVYSIFGRGP+G                 ILSHWEKYNTG+LF
Sbjct: 365885 ELFDHGLDSWSCVYFVVTVYSIFGRGPSGVSVFVLYLLLWVVLFSFILSHWEKYNTGILF 365706

Query: 186    LPWGYDISQV 195
              LPWGYDISQV
Sbjct: 365705 LPWGYDISQV 365676



 Score =  117 bits (294), Expect = 8e-25
 Identities = 58/81 (71%), Positives = 65/81 (80%)
 Frame = -3

Query: 228    AMIIGCALCVTLPMSLLNFFRSYKSNTLKHKSVYEAMVPFFSPCLLFTLCTVWILWSPSD 287
              + I    LC+T  +    FFRSYK+NTLK+ SVYEAMVPFFSPCLLF L T WIL SPSD
Sbjct: 358033 SFICNNVLCIT*FL----FFRSYKNNTLKYNSVYEAMVPFFSPCLLFILSTAWILQSPSD 357866

Query: 288    ILEIHPRIFYFMVGTAFANIT 308
              ILE+HPR+FYFMVGTAFANIT
Sbjct: 357865 ILELHPRVFYFMVGTAFANIT 357803



 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 44/72 (61%), Positives = 50/72 (69%)
 Frame = -1

Query: 196    TISFVYIVTAVVGVEAWYEPFLFNFLYRDLFTAMIIGCALCVTLPMSLLNFFRSYKSNTL 255
              TISFVYIVTA+VGVEAWYEPFLFNFLYRDLFTAMIIG  L V           +Y + TL
Sbjct: 364746 TISFVYIVTAIVGVEAWYEPFLFNFLYRDLFTAMIIGKKLHV----------EAYFNMTL 364597

Query: 256    KHKSVYEAMVPF 267
                K V++   P+
Sbjct: 364596 LLKPVFDYHKPY 364561



 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 35/40 (87%), Positives = 38/40 (95%)
 Frame = -1

Query: 43     KKKQVFPTWLAPNLITFSGFMLLVFNFLLLTYFDPDFYAS 82
              KKK VFPTWLAPNLITFSGF+L+VFNFLL+ YFDPDFYAS
Sbjct: 372630 KKK*VFPTWLAPNLITFSGFLLVVFNFLLMAYFDPDFYAS 372511



 Score = 61.6 bits (148), Expect = 7e-08
 Identities = 30/36 (83%), Positives = 31/36 (86%)
 Frame = -1

Query: 367    GVQVVKQLSRHFQIYPFSLRKPNSDULGMEEQNIGL 402
              G   VKQLS HFQIYPFSLRKPNSD LGMEE+NIGL
Sbjct: 354924 GFLQVKQLSSHFQIYPFSLRKPNSD*LGMEEKNIGL 354817



 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 25/38 (65%), Positives = 29/38 (76%)
 Frame = -1

Query: 82     SAPGHKHVPDWVWIVVGILNFAAYTLDGVDGKQARRTN 119
              +APG+KHVPDWVWIVVG+LNF AYTL G     A + N
Sbjct: 370653 AAPGYKHVPDWVWIVVGVLNFIAYTL-GKKSANAHKLN 370543



 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 35/92 (38%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
 Frame = -2

Query: 306    NITCQLIVCQMSSTRCPTLNWXXXXXXXXXXXXXXXXXTSRLESXXXXXXXXXXXXXHIH 365
              N  CQLIVCQMSSTRCP+LNW                  S +ES             HIH
Sbjct: 357302 NFKCQLIVCQMSSTRCPSLNW-FLVPLFLVVLVVNLGIASYVESILLYTLTAVFTLAHIH 357126

Query: 366    YGVQVVKQL-SRHFQIYPFSLRKPNSDULGME 396
              YGV+VV  L  + F +   S RK     +  E
Sbjct: 357125 YGVRVVSNLRQKGFHLVLVSTRKGGEGKISKE 357030



 Score = 53.1 bits (126), Expect = 2e-05
 Identities = 22/28 (78%), Positives = 25/28 (89%)
 Frame = -3

Query: 15     FDKYKYSALDTNPLSLYIMHPFWNTIVK 42
              F   +YSA+DTNPLSLY+MHPFWNTIVK
Sbjct: 373189 FISQQYSAVDTNPLSLYVMHPFWNTIVK 373106



 Score = 44.7 bits (104), Expect = 0.009
 Identities = 25/58 (43%), Positives = 32/58 (55%)
 Frame = -2

Query: 230    IIGCALCVTLPMSLLNFFRSYKSNTLKHKSVYEAMVPFFSPCLLFTLCTVWILWSPSD 287
              ++GCALCVTLPMSLLNFFR    N  ++  +   M   F  C  F    +W  W  S+
Sbjct: 359432 LLGCALCVTLPMSLLNFFR*VFLNWARNVKIVT*M--NFRICFTF---GIWAFWKGSE 359274



 Score = 42.7 bits (99), Expect = 0.033
 Identities = 18/19 (94%), Positives = 19/19 (100%)
 Frame = -3

Query: 1      MAGYEYVSPEQLSGFDKYK 19
              MAGYEYVSPEQL+GFDKYK
Sbjct: 388432 MAGYEYVSPEQLAGFDKYK 388376


>gb|JH418153.1| Mustela putorius furo unplaced genomic scaffold scaffold00181, whole genome
               shotgun sequence
          Length = 3957690

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 29/47 (61%), Positives = 33/47 (70%)
 Frame = -3

Query: 90      PDWVWIVVGILNFAAYTLDGVDGKQARRTNSSTPLGELFDHGLDSWS 136
               P W +I      F   +LD +DGKQARRTNSS+PLGELFDHG DS S
Sbjct: 1667740 PLWAYIACACGLFIYQSLDAIDGKQARRTNSSSPLGELFDHGCDSLS 1667600



 Score = 38.1 bits (87), Expect = 0.80
 Identities = 20/71 (28%), Positives = 38/71 (53%)
 Frame = -2

Query: 7       VSPEQLSGFDKYKYSALDTNPLSLYIMHPFWNTIVKKKKQVFPTWLAPNLITFSGFMLLV 66
               +S  QL   ++++Y +   + L   +M  +W  +V +     P+W+APNLIT  G  + +
Sbjct: 1673561 LSRHQLKRLEEHRYQSAGRSLLEP-LMQGYWEWLVGR----VPSWIAPNLITIIGLSINI 1673397

Query: 67      FNFLLLTYFDP 77
                  +LL ++ P
Sbjct: 1673396 CTTVLLVFYCP 1673364


>gb|JH417981.1| Mustela putorius furo unplaced genomic scaffold scaffold00009, whole genome
                shotgun sequence
          Length = 25604138

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 27/47 (57%), Positives = 34/47 (72%)
 Frame = -1

Query: 90       PDWVWIVVGILNFAAYTLDGVDGKQARRTNSSTPLGELFDHGLDSWS 136
                P W +++  +  F   +LD +DGKQARRTNS +PLGELFDHG DS S
Sbjct: 12497675 PYWTYLLCALGLFIYQSLDAIDGKQARRTNSCSPLGELFDHGCDSLS 12497535


>gb|JH418171.1| Mustela putorius furo unplaced genomic scaffold scaffold00199, whole genome
               shotgun sequence
          Length = 3580654

 Score = 38.9 bits (89), Expect = 0.47
 Identities = 21/62 (33%), Positives = 33/62 (53%)
 Frame = +3

Query: 263     AMVPFFSPCLLFTLCTVWILWSPSDILEIHPRIFYFMVGTAFANITCQLIVCQMSSTRCP 322
               + VP+F PC        W+LWSPS   E  P  F+F++ T+ ++ T  L+   + +T  P
Sbjct: 1675635 SQVPYFRPCNCG-----WLLWSPSHNHEYEPSFFFFIIPTSSSHST--LVSYSLRTTDLP 1675793

Query: 323     TL 324
                L
Sbjct: 1675794 PL 1675799


>gb|JH418051.1| Mustela putorius furo unplaced genomic scaffold scaffold00079, whole genome
               shotgun sequence
          Length = 9245174

 Score = 37.4 bits (85), Expect = 1.4
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
 Frame = +3

Query: 55      NLITFSGFMLLVFNFLLLTYFDPDFYASAPGHKHVPDWVWIVVGIL-------NFAAYTL 107
               N ITF    LL +NF  +  ++P F  +      +P+W W ++  L        F  + L
Sbjct: 5378382 NTITFFPPPLLYYNF*FVASYNPLFILNITLCTGMPNWYWCILIALRGKSAEFKFEMFAL 5378561

Query: 108     DGVDGKQARRTNSSTP 123
               D   GK+ +  N+S P
Sbjct: 5378562 DRTFGKEVKEQNTSNP 5378609


>gb|JH418013.1| Mustela putorius furo unplaced genomic scaffold scaffold00041, whole genome
               shotgun sequence
          Length = 13617405

 Score = 37.4 bits (85), Expect = 1.4
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 14/86 (16%)
 Frame = +1

Query: 18      YKYSALDTNPLSLYI----MHPFWNTIVKKKKQ-----VFPTWLAPNLITFSGFML---- 64
               Y   +LD N   +YI       FW+TI   +++     V+   L P LITFS F L    
Sbjct: 2193727 YTIPSLDLNLCLIYI*VFISLKFWDTISSNRRKCNLNLVYGFVLVPYLITFSPFFLYSTN 2193906

Query: 65      -LVFNFLLLTYFDPDFYASAPGHKHV 89
                L + F L  +F+   Y+  P  +HV
Sbjct: 2193907 FLSYQFFLKIFFNFHLYSHIPSLQHV 2193984


>gb|JH418012.1| Mustela putorius furo unplaced genomic scaffold scaffold00040, whole genome
               shotgun sequence
          Length = 13775466

 Score = 37.4 bits (85), Expect = 1.4
 Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
 Frame = +1

Query: 220     FLYRDLFTAMI-IGCALCVTLPMSLLNFFRSYKS--NTLKHKSVYEAMVPFFSPCL--LF 274
               F +R  F++++     LC    ++++N   SY +  NT+ + ++    +PFFS C+  L 
Sbjct: 3188605 FHFRH*FSSLV*FDLFLCFRSLLNMVNLSFSYLNSWNTI*YNNIIGVSIPFFSGCINPLL 3188784

Query: 275     TLCTVWILW 283
               T+C +++LW
Sbjct: 3188785 TVCCIFLLW 3188811


>gb|JH418129.1| Mustela putorius furo unplaced genomic scaffold scaffold00157, whole genome
               shotgun sequence
          Length = 4751788

 Score = 36.2 bits (82), Expect = 3.0
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
 Frame = -1

Query: 30      LYIMHP--FWNTIVKKKKQVFPT-----WLAPNLITFSGFMLLVF---NFLLLTYFDPDF 79
               +Y+ H   FW  +  K+++  P       L  NLI F  F+  +F   +F LL +F   F
Sbjct: 3831310 IYVFHSLKFWKVVSSKRQKYSPN*VGDPVLITNLIYFFFFLFYIFYLFSFFLLFFF*TSF 3831131

Query: 80      YASAPGHKHVPDWVWI 95
               Y  +P H      +W+
Sbjct: 3831130 YPLSPSHNMGSLLIWL 3831083


>gb|JH418176.1| Mustela putorius furo unplaced genomic scaffold scaffold00204, whole
              genome shotgun sequence
          Length = 3488912

 Score = 35.4 bits (80), Expect = 5.2
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 12/111 (10%)
 Frame = +1

Query: 226    FTAMIIGCALCVTLPMSLLNFFRSYKSNTLKHKSVYEAMVPFFSPCLLFTLCTVWILWSP 285
              F+ + I   +C T    ++NFF     +  K ++ Y +   F+   +L TLC VWIL+ P
Sbjct: 442408 FSFL*IFLQICATF---IINFF-----SLKKKRNKYLSRQTFYISSILSTLCQVWILFEP 442563

Query: 286    -----SDILEIHPRIFY-------FMVGTAFANITCQLIVCQMSSTRCPTL 324
                   SD   +  + F+         V  A  +  C   +C +    CP+L
Sbjct: 442564 QV*IASDFSPVFAQSFWCPFPAR*LEVDCA*VSHDCASFMCCLFHLMCPSL 442716


>gb|JH418125.1| Mustela putorius furo unplaced genomic scaffold scaffold00153, whole
              genome shotgun sequence
          Length = 4842529

 Score = 35.4 bits (80), Expect = 5.2
 Identities = 26/87 (29%), Positives = 37/87 (42%)
 Frame = -2

Query: 184    LFLPWGYDISQVTISFVYIVTAVVGVEAWYEPFLFNFLYRDLFTAMIIGCALCVTLPMSL 243
              LF   GYD   +++   +I       E   EP+   F    LF  +   CA C TLP   
Sbjct: 452181 LFDNMGYDFRLISLPLGFIQK-----EGKKEPYKAIFC---LFCMLEDPCAGCSTLPCLY 452026

Query: 244    LNFFRSYKSNTLKHKSVYEAMVPFFSP 270
                FF+S+  N   HK+ Y  +   + P
Sbjct: 452025 FFFFKSFTKNNGSHKTRYHLLTTRYVP 451945


>gb|JH417983.1| Mustela putorius furo unplaced genomic scaffold scaffold00011, whole genome
               shotgun sequence
          Length = 25197298

 Score = 35.4 bits (80), Expect = 5.2
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +2

Query: 244     LNFFRSYKSNTLKHKSVYEAMVPFFSPCLLFTLCTVWILWSPS 286
               L++F    S+T    S Y   +  FS    F+LCTVWIL+ PS
Sbjct: 4664909 LSYFSGKNSHTFLLTSCYNDRLYIFSNSRPFSLCTVWILFFPS 4665037


>gb|JH417997.1| Mustela putorius furo unplaced genomic scaffold scaffold00025, whole genome
               shotgun sequence
          Length = 17116245

 Score = 34.7 bits (78), Expect = 8.9
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
 Frame = +3

Query: 186     LPWGYDISQVTISFVYIVTAVVGVEAWYEP-FLFNFLYRDLFTAMIIGCALCVTLPMSLL 244
               LP+GY     +  FV    ++V    WYE    F FL   L    ++   LC+ + +S +
Sbjct: 6680673 LPFGYLFISRSSVFVLFFKSLVSFSLWYEL*MFFMFLKSFLIIRSVLVSYLCLIILVSEI 6680852

Query: 245     NFFRSYKSNTLKHKSVYEAMVPFFSPCLLFTLCTV 279
                  R +      H  +Y A  PFF  CL+   C +
Sbjct: 6680853 Q-IRIF----FLHVLIYGAPPPFFFLCLIIFDCVL 6680942


>gb|JH417976.1| Mustela putorius furo unplaced genomic scaffold scaffold00004, whole genome
                shotgun sequence
          Length = 30097591

 Score = 34.7 bits (78), Expect = 8.9
 Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 7/104 (6%)
 Frame = +2

Query: 225      LFTAMIIGCALCVTLPMSLLNFFRSYKSNTLKHKSVYEAMVPFFSPCLLFTLCTVWILWS 284
                LFT +I   + C +L +S   FF     N  K    +  M   F  C  +++ ++W +WS
Sbjct: 27469478 LFTWIIFP*SFCFSLCVSFFFFFYGSIINR-KCSISFRCMAY*FDSCTHYSMLSLW*VWS 27469654

Query: 285      PS-------DILEIHPRIFYFMVGTAFANITCQLIVCQMSSTRC 321
                PS       +I++  P   +FM  T       +   C   S  C
Sbjct: 27469655 PSVTIQLYHNIIDYIPHAVHFMSMTYLLYRLKKADACDSGSGSC 27469786


  Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/geno
  me.fa
    Posted date:  Oct 24, 2012  8:21 PM
  Number of letters in database: 2,400,181,698
  Number of sequences in database:  4245
  
Lambda     K      H
   0.327    0.141    0.468 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,329,206,400
Number of Sequences: 4245
Number of extensions: 23423847
Number of successful extensions: 179684
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 377
Number of HSP's that attempted gapping in prelim test: 118658
Number of HSP's gapped (non-prelim): 123339
length of query: 402
length of database: 800,060,566
effective HSP length: 132
effective length of query: 270
effective length of database: 799,500,226
effective search space: 215865061020
effective search space used: 215865061020
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 78 (34.7 bits)
