TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000109_1.0 # Protein # Selenoprotein 15 (Sel15) # Mus
musculus # Complete
         (162 letters)

Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/genome
.fa 
           4245 sequences; 2,400,181,698 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH417979.1| Mustela putorius furo unplaced genomic scaffold s...    86   4e-16

>gb|JH417979.1| Mustela putorius furo unplaced genomic scaffold scaffold00007, whole genome
                shotgun sequence
          Length = 28224589

 Score = 86.3 bits (212), Expect = 4e-16
 Identities = 42/43 (97%), Positives = 43/43 (100%)
 Frame = +1

Query: 120      YVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLERI 162
                YVRGSDPVLKLLDD+GNIAEELSILKWNTDSVEEFLSEKLERI
Sbjct: 15614401 YVRGSDPVLKLLDDSGNIAEELSILKWNTDSVEEFLSEKLERI 15614529



 Score = 82.0 bits (201), Expect = 8e-15
 Identities = 40/61 (65%), Positives = 43/61 (70%)
 Frame = +1

Query: 27       SALGAEFASEACRELGFXXXXXXXXXXXXGQFNLLPLDPVCRGCCQEEAQFETKKLYAGA 86
                SA GAEF+SEACRELGF            GQFNLL LDP CRGCCQEEAQFETKK+   +
Sbjct: 15564133 SAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEAQFETKKVLFSS 15564312

Query: 87       I 87
                I
Sbjct: 15564313 I 15564315



 Score = 43.5 bits (101), Expect = 0.003
 Identities = 20/22 (90%), Positives = 21/22 (95%)
 Frame = +3

Query: 81       KLYAGAILEVCGUKLGRFPQVQ 102
                +LYAGAILEVCG KLGRFPQVQ
Sbjct: 15589116 QLYAGAILEVCG*KLGRFPQVQ 15589181



 Score = 38.5 bits (88), Expect = 0.098
 Identities = 20/21 (95%), Positives = 20/21 (95%)
 Frame = +2

Query: 103      AFVRSDKPKLFRGLQIKYVRG 123
                AFVRSDKPKLFRGLQIK VRG
Sbjct: 15611885 AFVRSDKPKLFRGLQIK-VRG 15611944


  Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/geno
  me.fa
    Posted date:  Oct 24, 2012  8:21 PM
  Number of letters in database: 2,400,181,698
  Number of sequences in database:  4245
  
Lambda     K      H
   0.320    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 310,694,626
Number of Sequences: 4245
Number of extensions: 3565486
Number of successful extensions: 10640
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 10249
Number of HSP's gapped (non-prelim): 1228
length of query: 162
length of database: 800,060,566
effective HSP length: 119
effective length of query: 43
effective length of database: 799,555,411
effective search space: 34380882673
effective search space used: 34380882673
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 71 (32.0 bits)
