TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000078_1.0 # Protein # Methionine sulfoxide reductase A
(MsrA) # Mus musculus # Complete
         (233 letters)

Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/genome
.fa 
           4245 sequences; 2,400,181,698 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH418042.1| Mustela putorius furo unplaced genomic scaffold s...   107   6e-22
gb|JH418096.1| Mustela putorius furo unplaced genomic scaffold s...    37   0.93 
gb|JH417988.1| Mustela putorius furo unplaced genomic scaffold s...    34   4.6  

>gb|JH418042.1| Mustela putorius furo unplaced genomic scaffold scaffold00070, whole genome
               shotgun sequence
          Length = 9955506

 Score =  107 bits (266), Expect = 6e-22
 Identities = 46/55 (83%), Positives = 51/55 (92%)
 Frame = +3

Query: 179     KVLSKHNFGPITTDIREGQVFYYAEDYHQQYLSKNPDGYCGLGGTGVSCPMAIKK 233
               +VLS+H +G ITTDIREGQ FYYAEDYHQQYLSKNPDGYCGLGGTGVSCP+ +KK
Sbjct: 8357580 QVLSEHGYGLITTDIREGQTFYYAEDYHQQYLSKNPDGYCGLGGTGVSCPLGVKK 8357744



 Score = 90.5 bits (223), Expect = 5e-17
 Identities = 41/53 (77%), Positives = 46/53 (86%)
 Frame = -2

Query: 179     KVLSKHNFGPITTDIREGQVFYYAEDYHQQYLSKNPDGYCGLGGTGVSCPMAI 231
               ++LS+H F  ITTDIREGQ  YYAEDYHQQYLSKNPDGYCGLGGTGVSC + +
Sbjct: 8413577 QILSEHGFDLITTDIREGQT-YYAEDYHQQYLSKNPDGYCGLGGTGVSCLLCV 8413422



 Score = 85.1 bits (209), Expect = 2e-15
 Identities = 34/40 (85%), Positives = 38/40 (95%)
 Frame = +1

Query: 69      GMGCFWGAERKFWVLKGVYSTQVGFAGGHTRNPTYKEVCS 108
               GMGCFWGAERKFW +KG+YSTQVG+AGG+T NPTYKEVCS
Sbjct: 8143681 GMGCFWGAERKFWTMKGIYSTQVGYAGGYTTNPTYKEVCS 8143800



 Score = 73.6 bits (179), Expect = 7e-12
 Identities = 33/35 (94%), Positives = 33/35 (94%)
 Frame = +1

Query: 110     KTGHAEVVRVVYRPEHISFEELLKVFWENHDPTQG 144
               KTGHAEVVRVVY PE ISFEELLKVFWENHDPTQG
Sbjct: 8210416 KTGHAEVVRVVYEPERISFEELLKVFWENHDPTQG 8210520



 Score = 64.3 bits (155), Expect = 4e-09
 Identities = 29/37 (78%), Positives = 32/37 (86%)
 Frame = +2

Query: 144     GMRQGNDFGTQYRSAVYPTSAVQMEAALRSKEEYQKV 180
               GMRQGND GTQYRSA+YPTS   M+ ALRSKE+YQKV
Sbjct: 8249390 GMRQGNDHGTQYRSAIYPTSTEHMDVALRSKEDYQKV 8249500



 Score = 53.5 bits (127), Expect = 7e-06
 Identities = 23/24 (95%), Positives = 24/24 (100%)
 Frame = +3

Query: 46      AKHHVSGNRTVEPFPEGTQMAVFG 69
               AKHHV+GNRTVEPFPEGTQMAVFG
Sbjct: 8098269 AKHHVNGNRTVEPFPEGTQMAVFG 8098340



 Score = 48.9 bits (115), Expect = 2e-04
 Identities = 22/31 (70%), Positives = 25/31 (80%)
 Frame = +3

Query: 17      PVRRMGDSASKVISAEEALPGRTEPIPVTAK 47
               P  RMGDSASK++S +EALPGR EPIPV  K
Sbjct: 7931796 PGSRMGDSASKIVSPQEALPGRKEPIPVAGK 7931888


>gb|JH418096.1| Mustela putorius furo unplaced genomic scaffold scaffold00124, whole
              genome shotgun sequence
          Length = 6442065

 Score = 36.6 bits (83), Expect = 0.93
 Identities = 23/66 (34%), Positives = 32/66 (48%)
 Frame = -1

Query: 36     PGRTEPIPVTAKHHVSGNRTVEPFPEGTQMAVFGMGCFWGAERKFWVLKGVYSTQVGFAG 95
              P  T P+P+ A+H ++G R   P P    + V G G    A R F+ + G Y TQ+G   
Sbjct: 240006 PTATHPLPIVAEHGIAGTRGPSPTPHPHPLVVSG-GQEAAAGRAFFSVGGRY-TQLGGVK 239833

Query: 96     GHTRNP 101
              G    P
Sbjct: 239832 GSLETP 239815


>gb|JH417988.1| Mustela putorius furo unplaced genomic scaffold scaffold00016, whole genome
               shotgun sequence
          Length = 20841360

 Score = 34.3 bits (77), Expect = 4.6
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -3

Query: 86      VYSTQVGFAGGHTRNPTYKEVCSEKTGHAEVVRVVYR--PEHISFEELLKVFWENHDPTQ 143
               +Y T  GF+  HT +  +K++          +R+ +R  P    F+E L ++W    PTQ
Sbjct: 8771269 LY*THFGFSASHTFSMIFKKL----------IRLKWRTKPSISEFKERLSLYWGPRRPTQ 8771120

Query: 144     GMRQG 148
                 RQG
Sbjct: 8771119 NQRQG 8771105


  Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/geno
  me.fa
    Posted date:  Oct 24, 2012  8:21 PM
  Number of letters in database: 2,400,181,698
  Number of sequences in database:  4245
  
Lambda     K      H
   0.317    0.134    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 676,389,542
Number of Sequences: 4245
Number of extensions: 10588563
Number of successful extensions: 44759
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 152
Number of HSP's that attempted gapping in prelim test: 37634
Number of HSP's gapped (non-prelim): 19169
length of query: 233
length of database: 800,060,566
effective HSP length: 126
effective length of query: 107
effective length of database: 799,525,696
effective search space: 85549249472
effective search space used: 85549249472
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 74 (33.1 bits)
