TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000105_1.0 # Protein # Glutathione peroxidase 8 (GPx8) #
Mus musculus # Complete
         (209 letters)

Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/genome
.fa 
           4245 sequences; 2,400,181,698 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH417989.1| Mustela putorius furo unplaced genomic scaffold s...   130   3e-29
gb|JH417975.1| Mustela putorius furo unplaced genomic scaffold s...   104   2e-21
gb|JH418202.1| Mustela putorius furo unplaced genomic scaffold s...    51   4e-05
gb|JH418204.1| Mustela putorius furo unplaced genomic scaffold s...    49   1e-04
gb|JH418089.1| Mustela putorius furo unplaced genomic scaffold s...    44   0.005
gb|JH417983.1| Mustela putorius furo unplaced genomic scaffold s...    36   0.96 
gb|JH418086.1| Mustela putorius furo unplaced genomic scaffold s...    35   1.6  
gb|JH418083.1| Mustela putorius furo unplaced genomic scaffold s...    33   6.2  
gb|JH418242.1| Mustela putorius furo unplaced genomic scaffold s...    33   8.1  

>gb|JH417989.1| Mustela putorius furo unplaced genomic scaffold scaffold00017, whole genome
                shotgun sequence
          Length = 20568574

 Score =  130 bits (328), Expect = 3e-29
 Identities = 61/91 (67%), Positives = 71/91 (78%)
 Frame = -3

Query: 65       FKGKASLVVNVASDCRFTDKSYQTLRELHKEFGPYHFNVLAFPCNQFGXXXXXXXXXXXX 124
                F  + +LVVNVASDC+ TD++Y  L+ELHKEFGP+HF+VLAFPCNQFG            
Sbjct: 14158769 FFREVALVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEVVS 14158590

Query: 125      FARQNYGVTFPIFHKIKILGPEAEPAFRFIV 155
                FAR NYGVTFPIFHKIKILG EA+PAFRF+V
Sbjct: 14158589 FARSNYGVTFPIFHKIKILGSEADPAFRFLV 14158497



 Score =  127 bits (318), Expect = 4e-28
 Identities = 61/72 (84%), Positives = 66/72 (91%)
 Frame = -2

Query: 1        MEPFAAYPLKCSGPKAKIFAVLLSMVLCTVMLFLLQLKFLKPRTNSFYSFEVKDAKGRTV 60
                MEP  AYPL+CSG KAK+FAVLLSMVLCTVMLFLLQLKFLKP+ NSFY+FEVKDAKGRTV
Sbjct: 14159511 MEPLTAYPLRCSGSKAKVFAVLLSMVLCTVMLFLLQLKFLKPKINSFYTFEVKDAKGRTV 14159332

Query: 61       SLEKFKGKASLV 72
                SLEKFKGK S +
Sbjct: 14159331 SLEKFKGKVSCI 14159296



 Score =  103 bits (256), Expect = 6e-21
 Identities = 44/56 (78%), Positives = 52/56 (92%)
 Frame = -1

Query: 154      IVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPLEAIRPHVSQMIGQIILKKKEDL 209
                I+DSSKKEPRWNFWKYLVNPEGQVVK+WRPEEP+E IRP ++ +I Q+IL+KKEDL
Sbjct: 14154802 ILDSSKKEPRWNFWKYLVNPEGQVVKYWRPEEPIEVIRPEIAALIRQMILRKKEDL 14154635


>gb|JH417975.1| Mustela putorius furo unplaced genomic scaffold scaffold00003, whole genome
               shotgun sequence
          Length = 31471863

 Score =  104 bits (260), Expect = 2e-21
 Identities = 46/94 (48%), Positives = 64/94 (68%)
 Frame = +3

Query: 65      FKGKASLVVNVASDCRFTDKSYQTLRELHKEFGPYHFNVLAFPCNQFGXXXXXXXXXXXX 124
               F  + SLVVNVAS+C FTD+ Y+ L++L ++ GP+HFNVLAFPCNQFG            
Sbjct: 3095853 FGAQVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIES 3096032

Query: 125     FARQNYGVTFPIFHKIKILGPEAEPAFRFIVDSS 158
               FAR+ Y V+FP+F K+ + G  A PAF++++  S
Sbjct: 3096033 FARRTYSVSFPMFSKVAVTGTGAHPAFKYLIRES 3096134



 Score = 70.5 bits (171), Expect = 5e-11
 Identities = 29/57 (50%), Positives = 43/57 (75%)
 Frame = +2

Query: 153     FIVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPLEAIRPHVSQMIGQIILKKKEDL 209
               F +++S KEP WNFWKYLV P+G+VV  W P   +E IRP ++ ++ ++ILKK+E+L
Sbjct: 3097754 FSLETSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITALVRKLILKKREEL 3097924


>gb|JH418202.1| Mustela putorius furo unplaced genomic scaffold scaffold00230, whole genome
               shotgun sequence
          Length = 2968724

 Score = 50.8 bits (120), Expect = 4e-05
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = -3

Query: 44      TNSFYSFEVKD-AKGRTVSLEKFKGKASLVVNVASDCRFTDKSYQTLRELHKEFGPYHFN 102
               + S Y+F  +    G  +SL   +GK  L+ NVAS    T + Y  + EL +  GP    
Sbjct: 1597791 SRSVYAFSARPLGGGEPLSLGSLRGKVLLIENVASL*GTTVRDYTEMNELQRRLGPRGLV 1597612

Query: 103     VLAFPCNQFG 112
               VL FPCNQFG
Sbjct: 1597611 VLGFPCNQFG 1597582



 Score = 35.8 bits (81), Expect = 1.3
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 23/90 (25%)
 Frame = -1

Query: 134     FPIFHKIKILGPEAEPAFRFIVDS-----------------------SKKEPRWNFWKYL 170
               F +F K ++ G +A P F F+ ++                        + +  WNF K+L
Sbjct: 1597217 FTLFEKCEVNGAQAHPLFAFLREALPAPSDDATALMTDPKFIIWSPVCRNDIAWNFEKFL 1597038

Query: 171     VNPEGQVVKFWRPEEPLEAIRPHVSQMIGQ 200
               V P+G  V+ +    P   I P +  ++ Q
Sbjct: 1597037 VGPDGVPVRRYSRRFPTIDIEPDIEALLSQ 1596948


>gb|JH418204.1| Mustela putorius furo unplaced genomic scaffold scaffold00232, whole genome
               shotgun sequence
          Length = 2925994

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 28/67 (41%), Positives = 33/67 (49%)
 Frame = -1

Query: 46      SFYSFEVKDAKGRTVSLEKFKGKASLVVNVASDCRFTDKSYQTLRELHKEFGPYHFNVLA 105
               SFY        G  V    F+G+A L+ NVAS    T + +  L EL   F P    VL 
Sbjct: 2238931 SFYDLSAVSLDGEKVDFNTFRGRAVLIENVASL*GTTTRDFTQLNELQCRF-PRRLVVLG 2238755

Query: 106     FPCNQFG 112
               FPCNQFG
Sbjct: 2238754 FPCNQFG 2238734


>gb|JH418089.1| Mustela putorius furo unplaced genomic scaffold scaffold00117, whole genome
               shotgun sequence
          Length = 6689181

 Score = 43.9 bits (102), Expect = 0.005
 Identities = 21/47 (44%), Positives = 27/47 (57%)
 Frame = -1

Query: 66      KGKASLVVNVASDCRFTDKSYQTLRELHKEFGPYHFNVLAFPCNQFG 112
               +G   +V NVAS    TD +Y  L +LH  +      +LAFPCNQFG
Sbjct: 6130815 RGFVCIVTNVASQ*GKTDVNYTQLVDLHARYAECGLRILAFPCNQFG 6130675


>gb|JH417983.1| Mustela putorius furo unplaced genomic scaffold scaffold00011, whole
              genome shotgun sequence
          Length = 25197298

 Score = 36.2 bits (82), Expect = 0.96
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 163    RWNFWKYLVNPEGQVVKFWRPEEPLEAIRPHVSQMIGQ 200
              RWNF K+LV P+G  V  W    P+ A+R  + + + Q
Sbjct: 516474 RWNFEKFLVGPDGVPVMRWSHRTPVGAVRADILEYLKQ 516361



 Score = 35.4 bits (80), Expect = 1.6
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +2

Query: 163    RWNFWKYLVNPEGQVVKFWRPEEPLEAIRPHVSQMIGQ 200
              RWNF K+LV P+G  V  W  + P+ A++  + + + Q
Sbjct: 558398 RWNFEKFLVGPDGVPVMRWFHKAPVSAVKADILEYLKQ 558511


>gb|JH418086.1| Mustela putorius furo unplaced genomic scaffold scaffold00114, whole genome
               shotgun sequence
          Length = 6871129

 Score = 35.4 bits (80), Expect = 1.6
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +2

Query: 3       PFAAYPLKCSGPKAKIFAVLLSMVLCTVM 31
               PFA+  L CSGP+ KIF+   S+ LCT++
Sbjct: 3940166 PFASSTLLCSGPRTKIFSFGQSIKLCTIL 3940252


>gb|JH418083.1| Mustela putorius furo unplaced genomic scaffold scaffold00111, whole genome
               shotgun sequence
          Length = 6925615

 Score = 33.5 bits (75), Expect = 6.2
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -2

Query: 131     GVTFPIFHKIKILGPEAEPAFRFIVDSS 158
               GVTF   HK+ ++GP   PA   +VDSS
Sbjct: 4533114 GVTFSNLHKVSLIGPANLPALHLLVDSS 4533031


>gb|JH418242.1| Mustela putorius furo unplaced genomic scaffold scaffold00270, whole genome
               shotgun sequence
          Length = 2072772

 Score = 33.1 bits (74), Expect = 8.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 164     WNFWKYLVNPEGQVVKFWRPEEPLEAIR 191
               W+ W+  VNP G    FW+ +EP E I+
Sbjct: 2034419 WHLWREQVNPWGTCEDFWKKKEP*ETIK 2034502


  Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/geno
  me.fa
    Posted date:  Oct 24, 2012  8:21 PM
  Number of letters in database: 2,400,181,698
  Number of sequences in database:  4245
  
Lambda     K      H
   0.325    0.140    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 620,947,112
Number of Sequences: 4245
Number of extensions: 8873319
Number of successful extensions: 49706
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 86
Number of HSP's that attempted gapping in prelim test: 43767
Number of HSP's gapped (non-prelim): 18282
length of query: 209
length of database: 800,060,566
effective HSP length: 124
effective length of query: 85
effective length of database: 799,534,186
effective search space: 67960405810
effective search space used: 67960405810
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 73 (32.7 bits)
