TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000100_1.0 # Protein # Glutathione peroxidase 3 (GPx3) #
Mus musculus # Complete
         (224 letters)

Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/genome
.fa 
           4245 sequences; 2,400,181,698 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH418038.1| Mustela putorius furo unplaced genomic scaffold s...   150   3e-35
gb|JH417983.1| Mustela putorius furo unplaced genomic scaffold s...   120   5e-26
gb|JH418202.1| Mustela putorius furo unplaced genomic scaffold s...   111   3e-23
gb|JH418204.1| Mustela putorius furo unplaced genomic scaffold s...   100   8e-20
gb|JH417975.1| Mustela putorius furo unplaced genomic scaffold s...    51   4e-05
gb|JH417989.1| Mustela putorius furo unplaced genomic scaffold s...    49   1e-04
gb|JH418053.1| Mustela putorius furo unplaced genomic scaffold s...    44   0.004
gb|JH417997.1| Mustela putorius furo unplaced genomic scaffold s...    42   0.016
gb|JH418034.1| Mustela putorius furo unplaced genomic scaffold s...    36   1.1  
gb|JH418008.1| Mustela putorius furo unplaced genomic scaffold s...    33   9.5  

>gb|JH418038.1| Mustela putorius furo unplaced genomic scaffold scaffold00066, whole genome
               shotgun sequence
          Length = 10208665

 Score =  150 bits (380), Expect = 3e-35
 Identities = 66/75 (88%), Positives = 73/75 (97%)
 Frame = +3

Query: 150     LKNSCPPTAELLGSPGRLFWEPMKIHDIRWNFEKFLVGPDGIPVMRWYHRTTVSNVKMDI 209
               L+NSCPPT+ELLGSPGRLFWEPMK+HDIRWNFEKFLVGPDGIP+MRWYHRTTVS VKMDI
Sbjct: 3610425 LQNSCPPTSELLGSPGRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWYHRTTVSTVKMDI 3610604

Query: 210     LSYMRRQAALSARGK 224
               L+YMRRQAAL+ +GK
Sbjct: 3610605 LAYMRRQAALAVQGK 3610649



 Score = 89.7 bits (221), Expect = 9e-17
 Identities = 41/54 (75%), Positives = 46/54 (85%)
 Frame = +2

Query: 21      PGRGQEKSKTDCHGGMSGTIYEYGALTIDGEEYIPFKQYAGKYILFVNVASYXG 74
               PG G    +TDCH  +SGTIY+YGALTIDG+EYIPFKQ+AGKYILFVNVASY G
Sbjct: 3607997 PGTGLPLFQTDCHADVSGTIYDYGALTIDGQEYIPFKQFAGKYILFVNVASY*G 3608158



 Score = 78.6 bits (192), Expect = 2e-13
 Identities = 38/40 (95%), Positives = 38/40 (95%)
 Frame = +2

Query: 79      ELNALQEELGPFGLVILGFPSNQFGKQEPGENSEILPSLK 118
               ELNALQEEL PFGLVILGFP NQFGKQEPGENSEILPSLK
Sbjct: 3609341 ELNALQEELEPFGLVILGFPCNQFGKQEPGENSEILPSLK 3609460



 Score = 74.7 bits (182), Expect = 3e-12
 Identities = 34/39 (87%), Positives = 36/39 (92%)
 Frame = +3

Query: 118     KYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPP 156
               ++VRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLK S  P
Sbjct: 3609912 RHVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKVSA*P 3610028


>gb|JH417983.1| Mustela putorius furo unplaced genomic scaffold scaffold00011, whole
              genome shotgun sequence
          Length = 25197298

 Score =  120 bits (301), Expect = 5e-26
 Identities = 51/76 (67%), Positives = 63/76 (82%)
 Frame = +2

Query: 140    GEKEQKFYTFLKNSCPPTAELLGSPGRLFWEPMKIHDIRWNFEKFLVGPDGIPVMRWYHR 199
              GE    F + L+NSCPPT++LLGS  +LFWEPMK+HDIRWNFEKFLVGPDG+PVMRW+H+
Sbjct: 558284 GENLLFFLSLLQNSCPPTSDLLGSSNQLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWFHK 558463

Query: 200    TTVSNVKMDILSYMRR 215
                VS VK DIL Y+++
Sbjct: 558464 APVSAVKADILEYLKQ 558511



 Score = 98.6 bits (244), Expect = 2e-19
 Identities = 41/66 (62%), Positives = 53/66 (80%)
 Frame = -2

Query: 150    LKNSCPPTAELLGSPGRLFWEPMKIHDIRWNFEKFLVGPDGIPVMRWYHRTTVSNVKMDI 209
              L+ SCP  +E+LGS   + W+P+K+HDIRWNFEKFLVGPDG+PVMRW HRT V  V+ DI
Sbjct: 516558 LQLSCPHPSEVLGSSRHISWDPVKVHDIRWNFEKFLVGPDGVPVMRWSHRTPVGAVRADI 516379

Query: 210    LSYMRR 215
              L Y+++
Sbjct: 516378 LEYLKQ 516361



 Score = 73.2 bits (178), Expect = 8e-12
 Identities = 34/41 (82%), Positives = 36/41 (87%)
 Frame = +3

Query: 118    KYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTA 158
              +YVRPGGGFVPNFQLFEKGDVNGEKEQK +TFLK S  P A
Sbjct: 556962 RYVRPGGGFVPNFQLFEKGDVNGEKEQKVFTFLKVSDHPPA 557084



 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 34/40 (85%), Positives = 36/40 (90%)
 Frame = -1

Query: 79     ELNALQEELGPFGLVILGFPSNQFGKQEPGENSEILPSLK 118
              ELNALQEEL P GLV+LGFP NQFGKQEPG+NSEILP LK
Sbjct: 518452 ELNALQEELMPVGLVVLGFPCNQFGKQEPGDNSEILPGLK 518333



 Score = 70.9 bits (172), Expect = 4e-11
 Identities = 33/40 (82%), Positives = 36/40 (90%)
 Frame = +2

Query: 79     ELNALQEELGPFGLVILGFPSNQFGKQEPGENSEILPSLK 118
              ELNALQEEL PFG+V+LGFP NQFGKQEPG+NSEIL  LK
Sbjct: 556358 ELNALQEELKPFGVVVLGFPCNQFGKQEPGKNSEILSGLK 556477



 Score = 69.7 bits (169), Expect = 9e-11
 Identities = 29/44 (65%), Positives = 40/44 (90%)
 Frame = +2

Query: 31     DCHGGMSGTIYEYGALTIDGEEYIPFKQYAGKYILFVNVASYXG 74
              DC+ G++GTIYEYGALT++ EEY+ F++YAGK++LFVNVA+Y G
Sbjct: 552281 DCYKGVTGTIYEYGALTLNEEEYVQFQRYAGKHVLFVNVATY*G 552412



 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 30/41 (73%), Positives = 36/41 (87%)
 Frame = -2

Query: 113    ILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNS 153
              ++P  ++VRPG G+VPNFQLFEKGDVNGEKEQK +TFLK S
Sbjct: 517914 VVPRCRHVRPGRGYVPNFQLFEKGDVNGEKEQKVFTFLKVS 517792



 Score = 57.8 bits (138), Expect = 4e-07
 Identities = 26/44 (59%), Positives = 33/44 (75%)
 Frame = -2

Query: 31     DCHGGMSGTIYEYGALTIDGEEYIPFKQYAGKYILFVNVASYXG 74
              +C+  + G IY+Y ALT++G E I FKQYAGK IL VNVA+Y G
Sbjct: 521232 NCYKDVKGIIYDYEALTLNGNELIQFKQYAGKLILLVNVATYCG 521101


>gb|JH418202.1| Mustela putorius furo unplaced genomic scaffold scaffold00230, whole genome
               shotgun sequence
          Length = 2968724

 Score =  111 bits (277), Expect = 3e-23
 Identities = 54/109 (49%), Positives = 71/109 (65%), Gaps = 4/109 (3%)
 Frame = -1

Query: 105     QEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTAE----L 160
               QE  +N EIL SLKYVRPGGGF PNF LFEK +VNG +    + FL+ + P  ++    L
Sbjct: 1597292 QENAKNDEILNSLKYVRPGGGFEPNFTLFEKCEVNGAQAHPLFAFLREALPAPSDDATAL 1597113

Query: 161     LGSPGRLFWEPMKIHDIRWNFEKFLVGPDGIPVMRWYHRTTVSNVKMDI 209
               +  P  + W P+  +DI WNFEKFLVGPDG+PV R+  R    +++ DI
Sbjct: 1597112 MTDPKFIIWSPVCRNDIAWNFEKFLVGPDGVPVRRYSRRFPTIDIEPDI 1596966



 Score = 60.5 bits (145), Expect = 6e-08
 Identities = 33/72 (45%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
 Frame = -3

Query: 37      SGTIYEYGALTIDGEEYIPFKQYAGKYILFVNVASYXGD---QYLELNALQEELGPFGLV 93
               S ++Y + A  + G E +      GK +L  NVAS  G     Y E+N LQ  LGP GLV
Sbjct: 1597791 SRSVYAFSARPLGGGEPLSLGSLRGKVLLIENVASL*GTTVRDYTEMNELQRRLGPRGLV 1597612

Query: 94      ILGFPSNQFGKQ 105
               +LGFP NQFG Q
Sbjct: 1597611 VLGFPCNQFGHQ 1597576


>gb|JH418204.1| Mustela putorius furo unplaced genomic scaffold scaffold00232, whole genome
               shotgun sequence
          Length = 2925994

 Score = 99.8 bits (247), Expect = 8e-20
 Identities = 49/112 (43%), Positives = 67/112 (59%), Gaps = 4/112 (3%)
 Frame = -1

Query: 102     FGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTAE-- 159
               F  QE  +N EIL SLKYVRPGGGF P F L +K +VNG+ E   + +LK+  P   +  
Sbjct: 2236414 FLPQENCQNEEILNSLKYVRPGGGFQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDP 2236235

Query: 160     --LLGSPGRLFWEPMKIHDIRWNFEKFLVGPDGIPVMRWYHRTTVSNVKMDI 209
                 L+  P  + W P++  D+ WNFEKFL+GP+G P  R+       N++ DI
Sbjct: 2236234 FTLMTDPKFIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDI 2236079



 Score = 49.7 bits (117), Expect = 1e-04
 Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
 Frame = -1

Query: 39      TIYEYGALTIDGEEYIPFKQYAGKYILFVNVASYXGD---QYLELNALQEELGPFGLVIL 95
               + Y+  A+++DGE+ + F  + G+ +L  NVAS  G     + +LN LQ    P  LV+L
Sbjct: 2238931 SFYDLSAVSLDGEK-VDFNTFRGRAVLIENVASL*GTTTRDFTQLNELQCRF-PRRLVVL 2238758

Query: 96      GFPSNQFGKQEPG 108
               GFP NQFG Q  G
Sbjct: 2238757 GFPCNQFGHQVRG 2238719


>gb|JH417975.1| Mustela putorius furo unplaced genomic scaffold scaffold00003, whole genome
               shotgun sequence
          Length = 31471863

 Score = 50.8 bits (120), Expect = 4e-05
 Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
 Frame = +3

Query: 59      YAGKYILFVNVASYXG---DQYLELNALQEELGPFGLVILGFPSNQFGKQEPGENSEILP 115
               +  +  L VNVAS  G     Y  L  LQ +LGP    +L FP NQFG+QEP  N EI  
Sbjct: 3095853 FGAQVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIES 3096032

Query: 116     SLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFL 150
                 +       +  +F +F K  V G      + +L
Sbjct: 3096033 FARRT-----YSVSFPMFSKVAVTGTGAHPAFKYL 3096122



 Score = 40.4 bits (93), Expect = 0.059
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +3

Query: 164      PGRLFWEPMKIHDIRWNFEKFLVGPDGIPV 193
                P  + W  +  +D+ WN EKFLVGPDG+PV
Sbjct: 28103304 PKFITWSLVGCNDVAWNCEKFLVGPDGMPV 28103393



 Score = 36.2 bits (82), Expect = 1.1
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -2

Query: 169      WEPMKIHDIRWNFEKFLVGPDGIPVMRWYHRTTVSNVKMDI 209
                W  +  ++  WNF+KFLVG D + V  W      S++++DI
Sbjct: 19708304 WSSVCYNNGPWNFKKFLVGLDSVSVCNWSCHFPTSDMELDI 19708182



 Score = 33.1 bits (74), Expect = 9.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 179     WNFEKFLVGPDGIPVMRWYHRTTVSNVKMDILSYMRR 215
               WNF K+LV PDG  V  W    +V  ++  I + +R+
Sbjct: 3097787 WNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITALVRK 3097897


>gb|JH417989.1| Mustela putorius furo unplaced genomic scaffold scaffold00017, whole genome
                shotgun sequence
          Length = 20568574

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
 Frame = -3

Query: 65       LFVNVAS---YXGDQYLELNALQEELGPFGLVILGFPSNQFGKQEPGENSEILPSLKYVR 121
                L VNVAS        YL L  L +E GPF   +L FP NQFG+ EP  + E+   + + R
Sbjct: 14158751 LVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEV---VSFAR 14158581

Query: 122      PGGGFVPNFQLFEKGDVNGEKEQKFYTFL 150
                   G    F +F K  + G +    + FL
Sbjct: 14158580 SNYGV--TFPIFHKIKILGSEADPAFRFL 14158500


>gb|JH418053.1| Mustela putorius furo unplaced genomic scaffold scaffold00081, whole genome
               shotgun sequence
          Length = 8988685

 Score = 44.3 bits (103), Expect = 0.004
 Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +1

Query: 93      VILGFPSNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLF---EKGDVNGEKEQKFY 147
               ++LGFP   F  QE  +N EIL SL+YV P  GF PN  L     KG     +   F+
Sbjct: 1783792 IVLGFPCLHFRLQENAKNQEILNSLRYVLPRSGFEPNLLLLGRRGKGRAGAPRSSPFW 1783965


>gb|JH417997.1| Mustela putorius furo unplaced genomic scaffold scaffold00025, whole genome
                shotgun sequence
          Length = 17116245

 Score = 42.4 bits (98), Expect = 0.016
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
 Frame = -2

Query: 104      KQEPGENSEILPSLKYVRPGGGFVPNFQLF--EKGDVNGEKEQKFYTFLKNSCPPTAELL 161
                +QE   N +IL SLK + P GGF P   LF   +G+V           L      T   +
Sbjct: 14206523 RQEDIRNEDILNSLKDL*PSGGFEPTLILF*EVRGEVCAGAPPLHLPALPGPNDYTTAFM 14206344

Query: 162      GSPGRLFWEPMKIHDIRWNFEKFLVGPDGIPV 193
                  P  +   P+  +D+ WN    LVGPDG+ V
Sbjct: 14206343 TDPHFITRSPVCRNDVAWN---ILVGPDGMSV 14206257


>gb|JH418034.1| Mustela putorius furo unplaced genomic scaffold scaffold00062, whole genome
               shotgun sequence
          Length = 10512155

 Score = 36.2 bits (82), Expect = 1.1
 Identities = 19/45 (42%), Positives = 24/45 (53%)
 Frame = +2

Query: 112     EILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPP 156
               EIL  L+YV  G GF P   LFEK     E   + + F++  CPP
Sbjct: 8959088 EILNPLEYVPSGSGFEPTLTLFEK---*RETAHRVFAFVRGLCPP 8959213


>gb|JH418008.1| Mustela putorius furo unplaced genomic scaffold scaffold00036, whole genome
               shotgun sequence
          Length = 14493738

 Score = 33.1 bits (74), Expect = 9.5
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 146     FYTFLKNSCPPTAELLGSPGRLF-WEPMKIHDIRWNFEKFL 185
               F  FL  SC P    L SP   F W+P   H IRW F K++
Sbjct: 8965557 FPIFLPFSCFPVLFFLSSPIPSFLWKPFSTHGIRWWFLKYV 8965679


  Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/geno
  me.fa
    Posted date:  Oct 24, 2012  8:21 PM
  Number of letters in database: 2,400,181,698
  Number of sequences in database:  4245
  
Lambda     K      H
   0.319    0.141    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 638,708,755
Number of Sequences: 4245
Number of extensions: 10560310
Number of successful extensions: 38433
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 33718
Number of HSP's gapped (non-prelim): 13624
length of query: 224
length of database: 800,060,566
effective HSP length: 125
effective length of query: 99
effective length of database: 799,529,941
effective search space: 79153464159
effective search space used: 79153464159
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 74 (33.1 bits)
