TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000003_1.0 # Protein # Iodothyronine deiodinase 3 (DI3) #
Homo sapiens # Complete
         (278 letters)

Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/genome
.fa 
           4245 sequences; 2,400,181,698 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH418017.1| Mustela putorius furo unplaced genomic scaffold s...   521   e-146
gb|JH418057.1| Mustela putorius furo unplaced genomic scaffold s...   138   3e-31
gb|JH417975.1| Mustela putorius furo unplaced genomic scaffold s...    65   4e-09
gb|JH418061.1| Mustela putorius furo unplaced genomic scaffold s...    44   0.008
gb|JH418024.1| Mustela putorius furo unplaced genomic scaffold s...    37   0.76 

>gb|JH418017.1| Mustela putorius furo unplaced genomic scaffold scaffold00045, whole genome
               shotgun sequence
          Length = 12738967

 Score =  521 bits (1341), Expect = e-146
 Identities = 248/266 (93%), Positives = 259/266 (97%)
 Frame = -2

Query: 13      CAQTASCLVLFPRFLGTAFMLWLLDFLCIRKHFLGRRRRGQPEPEVELNSEGEEVPPDDP 72
               CAQTASCLVLFPRFLGTAFMLWLLDFLCIRKHFLGRRRRGQPEP VEL+S+GEEVPPDDP
Sbjct: 2613861 CAQTASCLVLFPRFLGTAFMLWLLDFLCIRKHFLGRRRRGQPEPAVELDSDGEEVPPDDP 2613682

Query: 73      PICVSDDNRLCTLASLKAVWHGQKLDFFKQAHEGGPAPNSEVVLPDGFQSQHILDYAQGN 132
               P+CVSDDNRLCTLASLKAVWHGQKLDFFKQA+EGGPAPNSEVVLP GFQ+QHILDYA+GN
Sbjct: 2613681 PVCVSDDNRLCTLASLKAVWHGQKLDFFKQAYEGGPAPNSEVVLPHGFQNQHILDYARGN 2613502

Query: 133     RPLVLNFGSCTUPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYIIPQ 192
               RPLVLNFGSCT PPFMARMSAF RLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPY IPQ
Sbjct: 2613501 RPLVLNFGSCT*PPFMARMSAFHRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYSIPQ 2613322

Query: 193     HRSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVIQSGTIMYQGGRGPD 252
               HRSLEDRVSAA+VLQQGAP C+LVLDTMANSSSSAYGAYFERLYVIQ+GTIMYQGGRGPD
Sbjct: 2613321 HRSLEDRVSAAQVLQQGAPSCSLVLDTMANSSSSAYGAYFERLYVIQNGTIMYQGGRGPD 2613142

Query: 253     GYQVSELRTWLERYDEQLHGARPRRV 278
               GYQVSELRTWLE Y+EQLHGA+PRRV
Sbjct: 2613141 GYQVSELRTWLEHYEEQLHGAQPRRV 2613064


>gb|JH418057.1| Mustela putorius furo unplaced genomic scaffold scaffold00085, whole genome
               shotgun sequence
          Length = 8401080

 Score =  138 bits (347), Expect = 3e-31
 Identities = 78/193 (40%), Positives = 109/193 (56%), Gaps = 24/193 (12%)
 Frame = +1

Query: 97      LDFFKQAHEGGPAPNSEVV------------------LPDGFQSQHILDYAQGNRPLVLN 138
               L F  Q   G  APNS VV                  + DG +  H+LD+A   RPLV+N
Sbjct: 2565106 LFFHHQVKLGEDAPNSSVVHVANAEGSDNSRNGAQVKMVDGAEC-HLLDFASPERPLVVN 2565282

Query: 139     FGSCTUPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVT---TDSPYIIPQHRS 195
               FGS T PPF +++ AF +LV ++    DFL++YI+EAHPSDGW     +   + +  HR+
Sbjct: 2565283 FGSAT*PPFTSQLPAFSKLVEEFSSVADFLLVYIDEAHPSDGWAVPGESSLSFEVKTHRN 2565462

Query: 196     LEDRVSAARVLQQG---APGCALVLDTMANSSSSAYGAYFERLYVIQSGTIMYQGGRGPD 252
                EDR +AA  L +     P C +V D M N+++ AYG  FER+ ++Q   I Y GG+GP 
Sbjct: 2565463 QEDRCAAAHQLLEHFSLPPQCRVVADRMDNNANVAYGVAFERVCIVQRQKIAYLGGKGPF 2565642

Query: 253     GYQVSELRTWLER 265
                Y + E+R WLE+
Sbjct: 2565643 CYNLQEVRRWLEK 2565681


>gb|JH417975.1| Mustela putorius furo unplaced genomic scaffold scaffold00003, whole genome
               shotgun sequence
          Length = 31471863

 Score = 64.7 bits (156), Expect = 4e-09
 Identities = 30/48 (62%), Positives = 36/48 (75%)
 Frame = +2

Query: 131     GNRPLVLNFGSCTUPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPS 178
               GNRPLVLNFGSCT P F+ ++  F+RL+  +    DFLIIYIEEAH S
Sbjct: 4299524 GNRPLVLNFGSCT*PSFLFKLDQFKRLIEDFCSMADFLIIYIEEAHAS 4299667



 Score = 63.9 bits (154), Expect = 8e-09
 Identities = 34/73 (46%), Positives = 46/73 (63%)
 Frame = +2

Query: 178     SDGWVTTDSPYIIPQHRSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYV 237
               +DGW   ++  I   HR+L+DR+ AAR+L    P C +V+DTM N SS  Y A  ERLYV
Sbjct: 4303199 ADGWAFKNNVNI-RTHRNLQDRLRAARLLLDRNPQCPVVVDTMENQSSQRYAALPERLYV 4303375

Query: 238     IQSGTIMYQGGRG 250
               +  G I+Y+  RG
Sbjct: 4303376 LWEGRILYKVTRG 4303414


>gb|JH418061.1| Mustela putorius furo unplaced genomic scaffold scaffold00089, whole
              genome shotgun sequence
          Length = 8322713

 Score = 43.9 bits (102), Expect = 0.008
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
 Frame = -1

Query: 135    LVLNFGSCTUPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGW-VTTDS 186
              LV+NF S T PPF + + AF + V ++    DFL++Y++E H S+ W V+ DS
Sbjct: 256379 LVVNFDSAT*PPFTS*LPAFSKRVEEFS-VADFLLVYMDETHLSEDWSVSGDS 256224


>gb|JH418024.1| Mustela putorius furo unplaced genomic scaffold scaffold00052, whole genome
               shotgun sequence
          Length = 11903426

 Score = 37.4 bits (85), Expect = 0.76
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -2

Query: 47      GRRRRGQPEPEVELNSEGEEVPPDDPPICVSDDNRLCTLASLK 89
               G  R+G P P  +L+   E +PP+ PP+CV +    C  +SL+
Sbjct: 1829101 GHARQGCPAPHSQLSGSSEPLPPEKPPLCVRETK--CNESSLR 1828979


  Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/geno
  me.fa
    Posted date:  Oct 24, 2012  8:21 PM
  Number of letters in database: 2,400,181,698
  Number of sequences in database:  4245
  
Lambda     K      H
   0.322    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 929,574,154
Number of Sequences: 4245
Number of extensions: 17284660
Number of successful extensions: 64317
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 173
Number of HSP's that attempted gapping in prelim test: 51575
Number of HSP's gapped (non-prelim): 31793
length of query: 278
length of database: 800,060,566
effective HSP length: 128
effective length of query: 150
effective length of database: 799,517,206
effective search space: 119927580900
effective search space used: 119927580900
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 75 (33.5 bits)
