genewise output
Score 203.63 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000118_1.0    1 MSGEPAPVSVVPPPGEVEAGSGVHIVVEY                     
                     MSGEP P S  PPPGE+E GSGV IVVEY                     
                     MSGEPGPTSEAPPPGEIEPGSGVRIVVEY                     
GL194160.1:subs 9224 aaggcgcatggcccggagcgaggcagggt                     
                     tggacgcccaccccgatacgggtgtttaa                     
                     gcggggggtagctcggtagttggcccgac                     


SPP00000118_1.0   30                           KPCGFEATYLELASAVKEEYPGI 
                                               +PCGFEATYLELASAVKE+YPGI 
                                C:C[tgt]       EPCGFEATYLELASAVKEQYPGI 
GL194160.1:subs 9311 TGGTGAGCG  Intron 1   TAGTgctgtggatcgcgaggagctcga 
                       <2-----[9313 : 9415]-2> acggtaccatatcgctaaaacgt 
                                               actatggccggggtcggggttct 


SPP00000118_1.0   54 EIESRLGGT                          AFEIEINGQLVFSK 
                     EIESR GGT                          AFEIEINGQLVFSK 
                     EIESRFGGT          G:G[ggg]        AFEIEINGQLVFSK 
GL194160.1:subs 9486 gagtctggaGGTGAGGC  Intron 2   CAGGGgtgagaagccgtta 
                     atacgtggc <1-----[9514 :10000]-1>  ctatatagatttca 
                     gcggctgca                          ctgcactagggccg 


SPP00000118_1.0   78 LENGGFPYEKD                       LMEAIRRASNGEPVE 
                     LENGGFPYEKD                       L+EAIRRASNGEP+E 
                     LENGGFPYEKD                       LIEAIRRASNGEPLE 
GL194160.1:subs10045 cgaggtctgagGTGAGTA  Intron 3   TAGcaggacagaaggccg 
                     taaggtcaaaa<0-----[10078:10158]-0>ttactggcgagacta 
                     ggtgccttgat                       ctgccaactcaacaa 


SPP00000118_1.0  104 KITNSRPPCVIL                                      
                     KITNSRPPCVIL                                      
                     KITNSRPPCVIL                                      
GL194160.1:subs10204 aaaaaccctgac                                      
                     atcaggccgttt                                      
                     gcgccttccccg                                      


//
Making a C in phase 2 intron
Making a G in phase 1 intron
>GL194160.1:subseq(229810,20239).pep
MSGEPGPTSEAPPPGEIEPGSGVRIVVEYCEPCGFEATYLELASAVKEQYPGIEIESRFG
GTGAFEIEINGQLVFSKLENGGFPYEKDLIEAIRRASNGEPLEKITNSRPPCVIL
//
>GL194160.1:subseq(229810,20239).[9224:10239].sp
ATGAGCGGGGAGCCGGGGCCGACGTCTGAAGCGCCCCCTCCCGGGGAGATTGAACCGGGT
AGTGGGGTGCGCATCGTCGTGGAATACTGTGAACCCTGTGGATTTGAGGCGACCTACCTG
GAGCTGGCGAGTGCCGTGAAGGAGCAGTATCCTGGCATTGAGATCGAGTCGCGCTTTGGG
GGCACAGGGGCCTTTGAGATCGAAATCAATGGACAGCTGGTGTTCTCCAAGCTGGAGAAT
GGGGGCTTCCCTTATGAGAAAGATCTCATTGAGGCCATCCGAAGAGCCAGTAACGGAGAA
CCCCTAGAAAAGATCACGAACAGCCGTCCTCCCTGCGTCATCCTG
//
GL194160.1:subseq(229810,20239)	GeneWise	match	9224	10239	203.63	+	.	GL194160.1:subseq(229810,20239)-genewise-prediction-1
GL194160.1:subseq(229810,20239)	GeneWise	cds	9224	9312	0.00	+	0	GL194160.1:subseq(229810,20239)-genewise-prediction-1
GL194160.1:subseq(229810,20239)	GeneWise	intron	9313	9415	0.00	+	.	GL194160.1:subseq(229810,20239)-genewise-prediction-1
GL194160.1:subseq(229810,20239)	GeneWise	cds	9416	9513	0.00	+	1	GL194160.1:subseq(229810,20239)-genewise-prediction-1
GL194160.1:subseq(229810,20239)	GeneWise	intron	9514	10000	0.00	+	.	GL194160.1:subseq(229810,20239)-genewise-prediction-1
GL194160.1:subseq(229810,20239)	GeneWise	cds	10001	10077	0.00	+	2	GL194160.1:subseq(229810,20239)-genewise-prediction-1
GL194160.1:subseq(229810,20239)	GeneWise	intron	10078	10158	0.00	+	.	GL194160.1:subseq(229810,20239)-genewise-prediction-1
GL194160.1:subseq(229810,20239)	GeneWise	cds	10159	10239	0.00	+	0	GL194160.1:subseq(229810,20239)-genewise-prediction-1
//