genewise output
Score 317.26 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000116_1.0   50 GYRRVFEEYMRVISQRYPDIRIEGENYLPQPIY                 
                     GYRRVFEEYMRVISQRYPDIRIEGENYLPQPIY                 
                     GYRRVFEEYMRVISQRYPDIRIEGENYLPQPIY                 
GL192476.1:subs 9323 gtacgtggtacgaacctcgacagggatccccat                 
                     gaggttaaatgttgagacatgtagaaatcacta                 
                     ttgggtggcggtacggcaccctaaatcttacat                 


SPP00000116_1.0   83                           HIASFLSVFKLVLIGLIIVGKDP 
                                               HIASFLSVFKLVLIGLIIVGKDP 
                                R:R[aga]       HIASFLSVFKLVLIGLIIVGKDP 
GL192476.1:subs 9422 AGGTAAGTA  Intron 1   TAGAcagttctgtacgtagtaaggagc 
                       <2-----[9424 :10008]-2> atccttcttattttgttttgaac 
                                               caatcgaccaaaaacaattcgtt 


SPP00000116_1.0  107 FAFFGMQAPSIWQWGQENK                       VYACMMV 
                     FAFFGMQAPSIWQWGQENK                       VYACMMV 
                     FAFFGMQAPSIWQWGQENK                       VYACMMV 
GL192476.1:subs10079 tgttgacgcaatctgcgaaGTATGTA  Intron 2   TAGgtgtaag 
                     tcttgtaccgtgaggaaaa<0-----[10136:12186]-0>tacgttt 
                     ttctcgattccgggcaatg                       ctatggt 


SPP00000116_1.0  133 FFLSNMIENQCMSTGAFEITLN                          V 
                     FFLSNMIENQCMSTGAFEITLN                          V 
                     FFLSNMIENQCMSTGAFEITLN          D:D[gat]        V 
GL192476.1:subs12208 tttaaaagactataggtgaataGGTGGGTT  Intron 3   CAGATg 
                     tttgattaaagtccgctatcta <1-----[12275:14013]-1>  t 
                     ccgccgtgcgtgaatatgatgt                          g 


SPP00000116_1.0  157 PVWSKLESGHLPSMQQLVQILDNEMKLNVHMDSIPHHRS           
                     PVWSKLESGHLPSMQQLVQILDNEMKLNVHMDSIPHHRS           
                     PVWSKLESGHLPSMQQLVQILDNEMKLNVHMDSIPHHRS           
GL192476.1:subs14019 cgttacgtgccctacccgcacgagaacagcagtacccct           
                     ctgcatacgatcctaattattaaatatatatactcaagc           
                     tggcgaattccacgagttattctaggctgtgtacattaa           


//
Making a R in phase 2 intron
Making a D in phase 1 intron
>GL192476.1:subseq(15735,40131).pep
GYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVLIGLIIVGKDPFAF
FGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPS
MQQLVQILDNEMKLNVHMDSIPHHRS
//
>GL192476.1:subseq(15735,40131).[9323:14135].sp
GGTTATAGGCGGGTGTTTGAGGAGTACATGCGGGTTATAAGCCAGCGGTACCCAGACATC
CGCATTGAAGGAGAAAATTACCTTCCTCAACCCATATATAGACACATAGCATCTTTCCTG
TCAGTCTTCAAACTAGTATTAATAGGCTTAATAATTGTTGGCAAGGATCCTTTTGCTTTC
TTTGGCATGCAAGCTCCTAGCATCTGGCAGTGGGGCCAAGAAAATAAGGTCTATGCATGT
ATGATGGTTTTCTTCTTGAGCAACATGATTGAGAACCAGTGTATGTCAACAGGTGCATTT
GAGATAACTTTGAATGATGTGCCTGTGTGGTCCAAGCTAGAATCTGGTCACCTCCCATCC
ATGCAACAGCTTGTTCAAATTCTTGACAATGAAATGAAGCTCAATGTGCATATGGATTCA
ATCCCACATCATCGATCA
//
GL192476.1:subseq(15735,40131)	GeneWise	match	9323	14135	317.26	+	.	GL192476.1:subseq(15735,40131)-genewise-prediction-1
GL192476.1:subseq(15735,40131)	GeneWise	cds	9323	9423	0.00	+	0	GL192476.1:subseq(15735,40131)-genewise-prediction-1
GL192476.1:subseq(15735,40131)	GeneWise	intron	9424	10008	0.00	+	.	GL192476.1:subseq(15735,40131)-genewise-prediction-1
GL192476.1:subseq(15735,40131)	GeneWise	cds	10009	10135	0.00	+	1	GL192476.1:subseq(15735,40131)-genewise-prediction-1
GL192476.1:subseq(15735,40131)	GeneWise	intron	10136	12186	0.00	+	.	GL192476.1:subseq(15735,40131)-genewise-prediction-1
GL192476.1:subseq(15735,40131)	GeneWise	cds	12187	12274	0.00	+	0	GL192476.1:subseq(15735,40131)-genewise-prediction-1
GL192476.1:subseq(15735,40131)	GeneWise	intron	12275	14013	0.00	+	.	GL192476.1:subseq(15735,40131)-genewise-prediction-1
GL192476.1:subseq(15735,40131)	GeneWise	cds	14014	14135	0.00	+	2	GL192476.1:subseq(15735,40131)-genewise-prediction-1
//