C4 Alignment: ------------ Query: Target: GL192357.1:subseq(4035670,32000) dna:scaffold scaffold:ailMel1:GL192357.1:1:4526552:1 REF Model: protein2genome:local Raw score: 1470 Query range: 0 -> 287 Target range: 9469 -> 31452 1 : MetAlaAlaSerLeuTrpMetGlyAsp >>>> Target Intron 1 >>>> LeuG : 11 ||||||||||||||||||||||||||| 524 bp |||| MetAlaAlaSerLeuTrpMetGlyAsp++ ++LeuG 9470 : ATGGCGGCCAGTCTGTGGATGGGCGACgt.........................agCTGG : 10024 12 : luProTyrMetAspGluAsnPheIleSerArgAlaPheAlaThrMetGlyGluThrValM : 31 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| luProTyrMetAspGluAsnPheIleSerArgAlaPheAlaThrMetGlyGluThrValM 10025 : AGCCCTACATGGATGAGAATTTCATCTCCAGAGCCTTTGCCACCATGGGGGAGACCGTGA : 10084 32 : etSerValLysIleIleArgAsnArgLeuThr{Gl} >>>> Target Intron 2 > : 42 ||||||||||||||||||||||||||||||||{||} 7979 bp etSerValLysIleIleArgAsnArgLeuThr{Gl}++ 10085 : TGAGCGTCAAAATAATCCGAAACCGCCTCACT{GG}gt...................... : 10121 43 : >>> {y}IleProAlaGlyTyrCysPheValGluPheAlaAspLeuAlaThrAlaGluL : 60 {|}|||||||||||||||||||||||||||||||||||||||||||||||||||| ++{y}IleProAlaGlyTyrCysPheValGluPheAlaAspLeuAlaThrAlaGluL 10122 : ...ag{A}ATCCCAGCGGGCTACTGTTTTGTAGAATTTGCAGATTTGGCCACAGCCGAGA : 18150 61 : ysCysLeuHisLysIleAsnGlyLysProLeuProGlyAlaThrPro >>>> Target : 76 ||||||||||||||||||||||||||||||||||||||||||||||| 6 ysCysLeuHisLysIleAsnGlyLysProLeuProGlyAlaThrPro++ 18151 : AGTGTTTGCATAAAATTAATGGGAAACCCCTGCCAGGAGCCACACCTgt........... : 18200 77 : Intron 3 >>>> AlaLysArgPheLysLeuAsnTyrAlaThrTyrGlyLysGlnPr : 90 14 bp |||||||||||||||||||||||||||||||||||||||||||| ++AlaLysArgPheLysLeuAsnTyrAlaThrTyrGlyLysGlnPr 18201 : ..............agGCAAAACGTTTTAAACTGAACTATGCCACTTATGGGAAACAGCC : 18854 91 : oAspAsn{Se} >>>> Target Intron 4 >>>> {r}ProGluTyrSerLeuPh : 99 |||||||{||} 1306 bp {|}||||||||||||||||| oAspAsn{Se}++ ++{r}ProGluTyrSerLeuPh 18855 : GGATAAC{AG}gt.........................ag{C}CCTGAGTACTCCCTCTT : 20187 100 : eValGlyAspLeuThrProAspValAspAspGlyMetLeuTyrGluPhePheValLysVa : 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| eValGlyAspLeuThrProAspValAspAspGlyMetLeuTyrGluPhePheValLysVa 20188 : TGTGGGGGACCTGACCCCAGATGTGGATGATGGCATGCTGTATGAATTCTTCGTCAAAGT : 20247 120 : lTyrProSerCysArgGlyGlyLysValValLeuAspGlnThrGlyValSer{Ly} >> : 137 ||||||||||||||||||||||||||||||||||||||||||||||||||||{||} lTyrProSerCysArgGlyGlyLysValValLeuAspGlnThrGlyValSer{Ly}++ 20248 : CTACCCCTCCTGTCGGGGAGGCAAGGTGGTTTTGGACCAGACGGGCGTGTCG{AA}gt.. : 20305 138 : >> Target Intron 5 >>>> {s}GlyTyrGlyPheValLysPheThrAspGluLe : 148 1179 bp {|}|||||||||||||||||||||||||||||||| ++{s}GlyTyrGlyPheValLysPheThrAspGluLe 20306 : .......................ag{G}GGCTATGGTTTTGTGAAGTTCACGGATGAGCT : 21513 149 : uGluGlnLysArgAlaLeuThrGluCysGlnGlyAlaValGlyLeuGlySerLysProVa : 168 |||||||||||||||||||!:!|||||||||||||||||||||||||||||||||||||| uGluGlnLysArgAlaLeuSerGluCysGlnGlyAlaValGlyLeuGlySerLysProVa 21514 : GGAACAGAAGCGAGCTCTGAGCGAGTGCCAGGGAGCCGTGGGCCTGGGCTCTAAGCCAGT : 21573 169 : lArgLeuSerValAlaIleProLys{Al} >>>> Target Intron 6 >>>> {a : 177 |||||||||||||||||||||||||{||} 2964 bp {| lArgLeuSerValAlaIleProLys{Al}++ ++{a 21574 : GCGGCTGAGTGTGGCAATCCCCAAA{GC}gt.........................ag{G : 24566 178 : }SerArgValLysProValGluTyrSerGlnMetTyrSerTyrSerTyrAsnGlnTyrTy : 197 }||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| }SerArgValLysProValGluTyrSerGlnMetTyrSerTyrSerTyrAsnGlnTyrTy 24567 : }AGCCGTGTGAAGCCAGTGGAGTATAGTCAGATGTACAGTTACAGCTACAACCAGTATTA : 24624 198 : rGlnGlnTyrGlnAsnTyrTyrAlaGlnTrpGlyTyrAspGlnAsnThrGlySerTyrSe : 217 |||||||||||||!:!|||||||||||||||||||||||||||||||||||||||||||| rGlnGlnTyrGlnSerTyrTyrAlaGlnTrpGlyTyrAspGlnAsnThrGlySerTyrSe 24625 : CCAGCAGTACCAGAGCTACTACGCGCAGTGGGGCTACGACCAGAACACGGGCAGCTACAG : 24684 218 : rTyrSerTyrProGlnTyrGlyTyrThrGlnSerThrMetGln >>>> Target Int : 232 ||||||||||||||||||||||||||||||||||.!!|||||| 189 b rTyrSerTyrProGlnTyrGlyTyrThrGlnSerAlaMetGln++ 24685 : CTACAGCTACCCCCAGTACGGCTACACGCAGAGCGCCATGCAGgt............... : 24731 233 : ron 7 >>>> ThrTyrGluGluValGlyAspAspAlaLeuGlu{A} >>>> Targe : 243 p |||||||||||||||||||||||||||||||||{|} 6 ++ThrTyrGluGluValGlyAspAspAlaLeuGlu{A}++ 24732 : ..........agACATATGAAGAAGTCGGGGATGACGCATTGGAA{G}gt.......... : 24954 244 : t Intron 8 >>>> {sp}ProMetProGlnLeuAspValThrGluAlaAsnLysGlu : 256 367 bp {||}||||||||||||||||||||||||||||||||||||||| ++{sp}ProMetProGlnLeuAspValThrGluAlaAsnLysGlu 24955 : ...............ag{AC}CCCATGCCACAGTTGGATGTGACGGAGGCCAACAAGGAG : 31357 257 : PheMetGluGlnSerGluGluLeuTyrAspAlaLeuMetAspCysHisTrpGlnProLeu : 276 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| PheMetGluGlnSerGluGluLeuTyrAspAlaLeuMetAspCysHisTrpGlnProLeu 31358 : TTCATGGAGCAGAGTGAGGAGCTGTATGACGCCCTGATGGACTGTCACTGGCAGCCCCTG : 31417 277 : AspThrValSerSerGluIleProAlaMetMet : 287 ||||||||||||||||||||||||||||||||| AspThrValSerSerGluIleProAlaMetMet 31418 : GACACAGTATCTTCAGAGATCCCGGCCATGATG : 31452 vulgar: 0 287 . GL192357.1:subseq(4035670,32000) 9469 31452 + 1470 M 9 27 5 0 2 I 0 520 3 0 2 M 32 96 S 0 2 5 0 2 I 0 7975 3 0 2 S 1 1 M 33 99 5 0 2 I 0 610 3 0 2 M 17 51 S 0 2 5 0 2 I 0 1302 3 0 2 S 1 1 M 43 129 S 0 2 5 0 2 I 0 1175 3 0 2 S 1 1 M 39 117 S 0 2 5 0 2 I 0 2960 3 0 2 S 1 1 M 54 162 5 0 2 I 0 185 3 0 2 M 11 33 S 0 1 5 0 2 I 0 6363 3 0 2 S 1 2 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2012-12-08 ##type DNA # # # seqname source feature start end score strand frame attributes # GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local gene 9470 31452 1470 + . gene_id 1 ; sequence ; gene_orientation + GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local cds 9470 9496 . + . GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local exon 9470 9496 . + . insertions 0 ; deletions 0 GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local splice5 9497 9498 . + . intron_id 1 ; splice_site "GT" GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local intron 9497 10020 . + . intron_id 1 GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local splice3 10019 10020 . + . intron_id 0 ; splice_site "AG" GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local cds 10021 10118 . + . GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local exon 10021 10118 . + . insertions 0 ; deletions 0 GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local splice5 10119 10120 . + . intron_id 2 ; splice_site "GT" GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local intron 10119 18097 . + . intron_id 2 GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local splice3 18096 18097 . + . intron_id 1 ; splice_site "AG" GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local cds 18098 18197 . + . GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local exon 18098 18197 . + . insertions 0 ; deletions 0 GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local splice5 18198 18199 . + . intron_id 3 ; splice_site "GT" GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local intron 18198 18811 . + . intron_id 3 GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local splice3 18810 18811 . + . intron_id 2 ; splice_site "AG" GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local cds 18812 18864 . + . GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local exon 18812 18864 . + . insertions 0 ; deletions 0 GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local splice5 18865 18866 . + . intron_id 4 ; splice_site "GT" GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local intron 18865 20170 . + . intron_id 4 GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local splice3 20169 20170 . + . intron_id 3 ; splice_site "AG" GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local cds 20171 20302 . + . GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local exon 20171 20302 . + . insertions 0 ; deletions 0 GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local splice5 20303 20304 . + . intron_id 5 ; splice_site "GT" GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local intron 20303 21481 . + . intron_id 5 GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local splice3 21480 21481 . + . intron_id 4 ; splice_site "AG" GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local cds 21482 21601 . + . GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local exon 21482 21601 . + . insertions 0 ; deletions 0 GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local splice5 21602 21603 . + . intron_id 6 ; splice_site "GT" GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local intron 21602 24565 . + . intron_id 6 GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local splice3 24564 24565 . + . intron_id 5 ; splice_site "AG" GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local cds 24566 24728 . + . GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local exon 24566 24728 . + . insertions 0 ; deletions 0 GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local splice5 24729 24730 . + . intron_id 7 ; splice_site "GT" GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local intron 24729 24917 . + . intron_id 7 GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local splice3 24916 24917 . + . intron_id 6 ; splice_site "AG" GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local cds 24918 24951 . + . GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local exon 24918 24951 . + . insertions 0 ; deletions 0 GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local splice5 24952 24953 . + . intron_id 8 ; splice_site "GT" GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local intron 24952 31318 . + . intron_id 8 GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local splice3 31317 31318 . + . intron_id 7 ; splice_site "AG" GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local cds 31319 31452 . + . GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local exon 31319 31452 . + . insertions 0 ; deletions 0 GL192357.1:subseq(4035670,32000) exonerate:protein2genome:local similarity 9470 31452 1470 + . alignment_id 1 ; Query ; Align 9470 1 27 ; Align 10021 10 96 ; Align 18099 43 99 ; Align 18812 76 51 ; Align 20172 94 129 ; Align 21483 138 117 ; Align 24567 178 162 ; Align 24918 232 33 ; Align 31321 244 132 # --- END OF GFF DUMP --- # -- completed exonerate analysis