C4 Alignment:
------------
Query: SPP00000006_1.0 # Protein # Glutathione peroxidase 3 (GPx3) # Homo sapiens # Complete
Target: GL192783.1:subseq(1367886,22700) dna:scaffold scaffold:ailMel1:GL192783.1:1:1423864:1 REF:[revcomp]
Model: protein2genome:local
Raw score: 1068
Query range: 0 -> 226
Target range: 17313 -> 9999
1 : MetAlaArgLeuLeuGlnAlaSerCysLeuLeuSerLeuLeuLeuAlaGlyPheValSer : 20
|||||||||||||||!:!||||||||||||||||||||||||||||||||||||||| !!
MetAlaArgLeuLeuArgAlaSerCysLeuLeuSerLeuLeuLeuAlaGlyPheValPro
17313 : ATGGCCCGGCTGCTGCGGGCGTCCTGCCTTCTCTCCCTGCTCCTGGCTGGCTTCGTCCCG : 17256
21 : GlnSerArgGlyGlnGluLysSerLys >>>> Target Intron 1 >>>> MetA : 31
! !|||||||||||||||||||||||| 4572 bp ! !|
ProSerArgGlyGlnGluLysSerLys++ ++ThrA
17255 : CCGAGCCGGGGGCAGGAGAAGTCGAAGgt.........................agACGG : 12651
32 : spCysHisGlyGlyIleSerGlyThrIleTyrGluTyrGlyAlaLeuThrIleAspGlyG : 51
||||||||!.!|||:!:|||||||||||||||||||||||||||||||||||||||||||
spCysHisAlaGlyValSerGlyThrIleTyrGluTyrGlyAlaLeuThrIleAspGlyG
12650 : ACTGCCACGCTGGCGTGAGTGGTACCATCTATGAGTACGGAGCCCTCACCATCGACGGGG : 12591
52 : luGluTyrIleProPheLysGlnTyrAlaGlyLysTyrValLeuPheValAsnValAlaS : 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
luGluTyrIleProPheLysGlnTyrAlaGlyLysTyrValLeuPheValAsnValAlaS
12590 : AGGAGTACATCCCCTTCAAGCAGTACGCTGGCAAATACGTCCTCTTTGTCAACGTGGCCA : 12531
72 : erTyrUnkGlyLeuThrGlyGlnTyrIle{G} >>>> Target Intron 2 >>>> : 81
||||| |||||||||! !||||||:!!{|} 1231 bp
erTyr***GlyLeuThrAspGlnTyrLeu{G}++ +
12530 : GCTACTGAGGCCTGACAGACCAGTACCTT{G}gt.........................a : 11271
82 : {lu}LeuAsnAlaLeuGlnGluGluLeuAlaProPheGlyLeuValIleLeuGlyPheP : 100
{||}||||||||||||||||||||||||! !||||||||||||||||||||||||||||
+{lu}LeuAsnAlaLeuGlnGluGluLeuGluProPheGlyLeuValIleLeuGlyPheP
11270 : g{AA}CTGAATGCACTACAGGAAGAGCTTGAACCATTTGGTCTGGTCATTCTGGGCTTCC : 11213
101 : roCysAsnGlnPheGlyLysGlnGluProGlyGluAsnSerGluIleLeuProThrLeu{ : 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||!:!|||{
roCysAsnGlnPheGlyLysGlnGluProGlyGluAsnSerGluIleLeuProSerLeu{
11212 : CCTGCAACCAATTTGGAAAACAGGAGCCAGGAGAGAATTCGGAAATCCTACCCAGCCTC{ : 11153
121 : Ly} >>>> Target Intron 3 >>>> {s}TyrValArgProGlyGlyGlyPheV : 129
||} 432 bp {|}|||||||||||||||||||||||||
Ly}++ ++{s}TyrValArgProGlyGlyGlyPheV
11152 : AA}gt.........................ag{G}TATGTCCGACCGGGCGGGGGCTTCG : 10694
130 : alProAsnPheGlnLeuPheGluLysGlyAspValAsnGlyGluLysGluGlnLysPheT : 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
alProAsnPheGlnLeuPheGluLysGlyAspValAsnGlyGluLysGluGlnLysPheT
10693 : TCCCCAATTTCCAACTGTTTGAGAAAGGGGATGTGAACGGGGAGAAAGAGCAGAAGTTCT : 10634
150 : yrThrPheLeuLys >>>> Target Intron 4 >>>> AsnSerCysProProTh : 159
|||||||||||||| 401 bp |||||||||||||||||
yrThrPheLeuLys++ ++AsnSerCysProProTh
10633 : ACACGTTCCTGAAGgt.........................agAACTCCTGCCCTCCCAC : 10203
160 : rSerGluLeuLeuGlyThrSerAspArgLeuPheTrpGluProMetLysValHisAspIl : 179
||||||||||||||||:!! !!! !|||||||||||||||||||||||||||||||||||
rSerGluLeuLeuGlySerProGlyArgLeuPheTrpGluProMetLysValHisAspIl
10202 : CTCGGAGCTCCTGGGCTCACCTGGCCGCCTCTTCTGGGAACCCATGAAGGTCCATGACAT : 10143
180 : eArgTrpAsnPheGluLysPheLeuValGlyProAspGlyIleProIleMetArgTrpHi : 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||:!
eArgTrpAsnPheGluLysPheLeuValGlyProAspGlyIleProIleMetArgTrpTy
10142 : CCGCTGGAACTTTGAGAAGTTCCTGGTGGGGCCAGATGGTATACCCATCATGCGCTGGTA : 10083
200 : sHisArgThrThrValSerAsnValLysMetAspIleLeuSerTyrMetArgArgGlnAl : 219
!|||||||||||||||!:!!.!||||||||||||||||||:!!|||||||||||||||||
rHisArgThrThrValAsnThrValLysMetAspIleLeuAlaTyrMetArgArgGlnAl
10082 : CCACCGGACCACGGTCAACACTGTCAAGATGGACATCCTGGCCTACATGAGGCGGCAGGC : 10023
220 : aAlaLeuGlyValLysArgLys : 226
|!.!|||!.!|||||| !!|||
aGlyLeuAlaValLysGlyLys
10022 : AGGCCTGGCCGTCAAGGGGAAG : 10000
vulgar: SPP00000006_1.0 0 226 . GL192783.1:subseq(1367886,22700) 17313 9999 - 1068 M 29 87 5 0 2 I 0 4568 3 0 2 M 51 153 S 0 1 5 0 2 I 0 1227 3 0 2 S 1 2 M 38 114 S 0 2 5 0 2 I 0 428 3 0 2 S 1 1 M 33 99 5 0 2 I 0 397 3 0 2 M 73 219
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-12-02
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
GL192783.1:subseq(1367886,22700) exonerate:protein2genome:local gene 10000 17313 1068 - . gene_id 1 ; sequence SPP00000006_1.0 ; gene_orientation +
GL192783.1:subseq(1367886,22700) exonerate:protein2genome:local cds 17227 17313 . - .
GL192783.1:subseq(1367886,22700) exonerate:protein2genome:local exon 17227 17313 . - . insertions 0 ; deletions 0
GL192783.1:subseq(1367886,22700) exonerate:protein2genome:local splice5 17225 17226 . - . intron_id 1 ; splice_site "GT"
GL192783.1:subseq(1367886,22700) exonerate:protein2genome:local intron 12655 17226 . - . intron_id 1
GL192783.1:subseq(1367886,22700) exonerate:protein2genome:local splice3 12655 12656 . - . intron_id 0 ; splice_site "AG"
GL192783.1:subseq(1367886,22700) exonerate:protein2genome:local cds 12501 12654 . - .
GL192783.1:subseq(1367886,22700) exonerate:protein2genome:local exon 12501 12654 . - . insertions 0 ; deletions 0
GL192783.1:subseq(1367886,22700) exonerate:protein2genome:local splice5 12499 12500 . - . intron_id 2 ; splice_site "GT"
GL192783.1:subseq(1367886,22700) exonerate:protein2genome:local intron 11270 12500 . - . intron_id 2
GL192783.1:subseq(1367886,22700) exonerate:protein2genome:local splice3 11270 11271 . - . intron_id 1 ; splice_site "AG"
GL192783.1:subseq(1367886,22700) exonerate:protein2genome:local cds 11152 11269 . - .
GL192783.1:subseq(1367886,22700) exonerate:protein2genome:local exon 11152 11269 . - . insertions 0 ; deletions 0
GL192783.1:subseq(1367886,22700) exonerate:protein2genome:local splice5 11150 11151 . - . intron_id 3 ; splice_site "GT"
GL192783.1:subseq(1367886,22700) exonerate:protein2genome:local intron 10720 11151 . - . intron_id 3
GL192783.1:subseq(1367886,22700) exonerate:protein2genome:local splice3 10720 10721 . - . intron_id 2 ; splice_site "AG"
GL192783.1:subseq(1367886,22700) exonerate:protein2genome:local cds 10620 10719 . - .
GL192783.1:subseq(1367886,22700) exonerate:protein2genome:local exon 10620 10719 . - . insertions 0 ; deletions 0
GL192783.1:subseq(1367886,22700) exonerate:protein2genome:local splice5 10618 10619 . - . intron_id 4 ; splice_site "GT"
GL192783.1:subseq(1367886,22700) exonerate:protein2genome:local intron 10219 10619 . - . intron_id 4
GL192783.1:subseq(1367886,22700) exonerate:protein2genome:local splice3 10219 10220 . - . intron_id 3 ; splice_site "AG"
GL192783.1:subseq(1367886,22700) exonerate:protein2genome:local cds 10000 10218 . - .
GL192783.1:subseq(1367886,22700) exonerate:protein2genome:local exon 10000 10218 . - . insertions 0 ; deletions 0
GL192783.1:subseq(1367886,22700) exonerate:protein2genome:local similarity 10000 17313 1068 - . alignment_id 1 ; Query SPP00000006_1.0 ; Align 17314 1 87 ; Align 12655 30 153 ; Align 11268 82 114 ; Align 10719 121 99 ; Align 10219 154 219
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis