Find start end points: [11,9980][179,16531] Score 122596
Recovering alignment: Alignment recovered Explicit read offfe 71%

genewise output
Score 353.74 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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Information
	Name GL192442.1:subseq(805768,27000) is longer than allowed name
block (15). Truncating

SPP00000104_1.0   12 LWAAACAQSEQDFYDFKAVNIRGKLVSLEKYRGS                
                     L AAACAQ EQDFYDFKAVNIRGKLVSLEKYRGS                
                     LSAAACAQREQDFYDFKAVNIRGKLVSLEKYRGS                
GL192442.1:subs 9979 ctgggtgccgcgttgtaggaacgatgtcgatcgt                
                     tccccgcagaaataatactatggattctaaaggc                
                     ggcgccgggggcccccggcccgcgggggggcccg                


SPP00000104_1.0   46                        VSLVVNVASECGFTDQNYRALQQLQR 
                                            VSLVVNVASECGFTDQ+YRALQQLQR 
                                            VSLVVNVASECGFTDQHYRALQQLQR 
GL192442.1:subs10081 GTGAGTG  Intron 1   CAGgtcggaggagtgtagcctcgtccccc 
                     <0-----[10081:14590]-0>tctttatcgaggtcaaaagctaatag 
                                            gcgggcgtcgtccgcgccacgggggg 


SPP00000104_1.0   72 DLGPHHFNVLAFPCNQFGQQEPDTNREIENFARRTYSVSFPMFSKIAVT 
                     DLGPHHFNVLAFPCNQFGQQEPDTN+EIE+FARRTYSVSFPMFSK+AVT 
                     DLGPHHFNVLAFPCNQFGQQEPDTNKEIESFARRTYSVSFPMFSKVAVT 
GL192442.1:subs14669 gcgccctagcgtctactgccgcgaaagagatgccatagttcataaggga 
                     atgcaatattctcgaatgaaacacaaatagtcggcagtctcttgatctc 
                     cggcccctgtcccccgccgggttccggcgccccccctttccgtcgcact 


SPP00000104_1.0  121 GTGAHPAFKYLT                          TSGKEPTWNFW 
                     G GAHPAFKYL                           TSGKEPTWNFW 
                     GAGAHPAFKYLI          Q:Q[cag]        TSGKEPTWNFW 
GL192442.1:subs14816 ggggccgtatcaCGTGAGTC  Intron 2   TAGAGatgagcatatt 
                     gcgcacctaatt <1-----[14853:16389]-1>  ccgaaccgatg 
                     cttcctccgcgc                          ttgggccgctg 


SPP00000104_1.0  145 KYLVDPDGKVVGAWDPTVPVAEIKPRITEQVMKLIL              
                     KYLV PDGKVVGAWDPTV V EIKP+IT  V KLIL              
                     KYLVAPDGKVVGAWDPTVSVEEIKPQITALVRKLIL              
GL192442.1:subs16425 atcggcggaggggtgcagtgggaaccaagcgaacac              
                     aattccagattgcgacctctaatacatccttgattt              
                     gcagcatagaagtgcatgtgggcgcgcaatgggccg              


//
Making a Q in phase 1 intron
>GL192442.1:subseq(805768,27000).pep
LSAAACAQREQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQR
DLGPHHFNVLAFPCNQFGQQEPDTNKEIESFARRTYSVSFPMFSKVAVTGAGAHPAFKYL
IQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEIKPQITALVRKLIL
//
>GL192442.1:subseq(805768,27000).[9979:16532].sp
CTGTCGGCCGCGGCCTGCGCGCAGCGGGAGCAGGACTTCTACGACTTCAAGGCGGTCAAC
ATCCGGGGCAAGTTGGTGTCGCTGGAGAAGTACCGCGGCTCGGTGTCCCTGGTGGTGAAC
GTGGCTAGCGAGTGTGGCTTCACGGACCAGCACTACCGAGCCTTGCAGCAGCTGCAGCGG
GACCTGGGGCCCCACCACTTCAATGTGCTTGCCTTCCCCTGCAACCAGTTCGGCCAGCAG
GAGCCTGATACCAACAAGGAGATCGAGAGCTTCGCCCGCCGCACCTACAGTGTTTCTTTC
CCCATGTTTAGCAAGGTCGCAGTCACTGGCGCTGGTGCCCACCCTGCCTTCAAGTACCTG
ATCCAGACTTCTGGGAAGGAGCCCACCTGGAACTTTTGGAAGTACCTAGTGGCCCCAGAT
GGAAAGGTAGTAGGGGCTTGGGACCCAACTGTGTCTGTGGAGGAGATCAAGCCCCAGATC
ACAGCACTTGTGAGGAAGCTCATCCTG
//
GL192442.1:subseq(805768,27000)	GeneWise	match	9979	16532	353.74	+	.	GL192442.1:subseq(805768,27000)-genewise-prediction-1
GL192442.1:subseq(805768,27000)	GeneWise	cds	9979	10080	0.00	+	0	GL192442.1:subseq(805768,27000)-genewise-prediction-1
GL192442.1:subseq(805768,27000)	GeneWise	intron	10081	14590	0.00	+	.	GL192442.1:subseq(805768,27000)-genewise-prediction-1
GL192442.1:subseq(805768,27000)	GeneWise	cds	14591	14852	0.00	+	0	GL192442.1:subseq(805768,27000)-genewise-prediction-1
GL192442.1:subseq(805768,27000)	GeneWise	intron	14853	16389	0.00	+	.	GL192442.1:subseq(805768,27000)-genewise-prediction-1
GL192442.1:subseq(805768,27000)	GeneWise	cds	16390	16532	0.00	+	2	GL192442.1:subseq(805768,27000)-genewise-prediction-1
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