Find start end points: [27,9998][196,11032] Score 94552
Recovering alignment: Alignment recovered Explicit read offfe 57%

genewise output
Score 272.82 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

Information
	Name GL193041.1:subseq(532369,31000) is longer than allowed name
block (15). Truncating

SPP00000101_1.0   28 MCASRDDWRCARSMHEFSAKDIDGHMVCLDKY                  
                     +CASRDDWRCA+SMHEFSAKDIDG MV LDKY                  
                     QCASRDDWRCAQSMHEFSAKDIDGRMVNLDKY                  
GL193041.1:subs 9997 ctgtcggtctgctacgttgagaggcagacgat                  
                     agccgaagggcactaatccaataggttataaa                  
                     gcgcaccgcttgcgcgcccgcctacgtcgcgc                  


SPP00000101_1.0   60                           GFVCIVTNVASQXGKTDVNYTQL 
                                               GFVCIVTNVASQXGKTDVNYTQL 
                                R:R[cgg]       GFVCIVTNVASQXGKTDVNYTQL 
GL193041.1:subs10093 CGGTGGGTA  Intron 1   CAGGgtgtagaaggtctgaaggatacc 
                       <2-----[10095:10177]-2> gttgttcatccaggacataacat 
                                               ccgcccctgcgaacaacacttgt 


SPP00000101_1.0   84 VDLHARYAECGLRILAFPCNQFGRQ                       E 
                     VDLHARYAE GLRILAFPCNQFGRQ                       E 
                     VDLHARYAERGLRILAFPCNQFGRQ                       E 
GL193041.1:subs10248 ggccgctggcgtcacgtctactgccGTGCGTG  Intron 2   CAGg 
                     tatacgacaggtgttctcgaatgga<0-----[10323:10412]-0>a 
                     ccgccactgctagcgcctccgcggg                       g 


SPP00000101_1.0  110 PGSNQEIKEFAAGYNVKFDMYSKICVNGDDAHPLWKWMKVQPKGRGMLG 
                     PGSN EIKEFAAGYNV+FDMYSKICVNGDDAHPLWKWMKVQPKGRG+LG 
                     PGSNAEIKEFAAGYNVRFDMYSKICVNGDDAHPLWKWMKVQPKGRGILG 
GL193041.1:subs10416 cgaaggaagtgggtagatgataaatgaggggccctataagccagagacg 
                     cggacataatccgaatgtatagatgtagaacactgagtatacagggttg 
                     agttggcagcttcttcactgccgctgtgcttcggggggacgcgggccga 


SPP00000101_1.0  159                           -------NAIKWNFTKFLIDKNG 
                                                        +   F+ FLIDKNG 
                                -:N[aac]       IPLTHGFPVLTRPFS!FLIDKNG 
GL193041.1:subs10563 AAGTGAGTG  Intron 3   CAGCaccacgtcgtacctt4tcagaag 
                       <2-----[10565:10814]-2> tctcagtcttcgctc tttaaag 
                                               ccggttcttgagtcg cctcgtc 


SPP00000101_1.0  175 CVVKRYGPMEEPQ                       VIEKDLPCYL    
                     CVVKRYGPMEEP                        VIEKDLPCYL    
                     CVVKRYGPMEEPL                       VIEKDLPCYL    
GL193041.1:subs10886 tggactgcaggccGTAGGCG  Intron 4   CAGgagagtcttc    
                     gttagagctaact<0-----[10925:11003]-0>ttaaatcgat    
                     tgggcctcgagcg                       aaggcacccc    


//
Making a R in phase 2 intron
Making a N in phase 2 intron
>GL193041.1:subseq(532369,31000).pep
QCASRDDWRCAQSMHEFSAKDIDGRMVNLDKYRGFVCIVTNVASQXGKTDVNYTQLVDLH
ARYAERGLRILAFPCNQFGRQEPGSNAEIKEFAAGYNVRFDMYSKICVNGDDAHPLWKWM
KVQPKGRGILGNIPLTHGFPVLTRPFSXFLIDKNGCVVKRYGPMEEPLVIEKDLPCYL
//
>GL193041.1:subseq(532369,31000).[9997:10860].sp
CAGTGCGCGTCCCGAGACGACTGGCGCTGTGCTCAGTCCATGCACGAGTTCTCCGCCAAG
GACATCGATGGACGCATGGTTAACCTGGACAAGTACCGGGGCTTCGTGTGCATCGTCACC
AATGTGGCCTCGCAATGAGGCAAAACAGACGTAAACTATACTCAGCTTGTCGACCTGCAC
GCCCGATACGCTGAGCGCGGTTTACGGATCCTGGCCTTCCCTTGCAACCAGTTCGGGCGG
CAGGAGCCAGGGAGTAATGCGGAGATCAAAGAGTTCGCTGCTGGCTATAATGTCAGATTC
GATATGTACAGCAAGATCTGTGTGAATGGGGACGATGCTCACCCGCTGTGGAAGTGGATG
AAAGTCCAGCCCAAGGGGAGGGGCATCCTGGGAAACATCCCCCTGACGCATGGTTTCCCT
GTTTTGACACGGCCTTTCTCG
>GL193041.1:subseq(532369,31000).[10865:11033].sp
TTCCTCATTGACAAGAATGGCTGTGTGGTGAAGCGCTACGGTCCCATGGAAGAGCCCCTG
GTAATAGAGAAGGACTTACCCTGCTACCTC
//
GL193041.1:subseq(532369,31000)	GeneWise	match	9997	10860	225.56	+	.	GL193041.1:subseq(532369,31000)-genewise-prediction-1
GL193041.1:subseq(532369,31000)	GeneWise	cds	9997	10094	0.00	+	0	GL193041.1:subseq(532369,31000)-genewise-prediction-1
GL193041.1:subseq(532369,31000)	GeneWise	intron	10095	10177	0.00	+	.	GL193041.1:subseq(532369,31000)-genewise-prediction-1
GL193041.1:subseq(532369,31000)	GeneWise	cds	10178	10322	0.00	+	1	GL193041.1:subseq(532369,31000)-genewise-prediction-1
GL193041.1:subseq(532369,31000)	GeneWise	intron	10323	10412	0.00	+	.	GL193041.1:subseq(532369,31000)-genewise-prediction-1
GL193041.1:subseq(532369,31000)	GeneWise	cds	10413	10564	0.00	+	0	GL193041.1:subseq(532369,31000)-genewise-prediction-1
GL193041.1:subseq(532369,31000)	GeneWise	intron	10565	10814	0.00	+	.	GL193041.1:subseq(532369,31000)-genewise-prediction-1
GL193041.1:subseq(532369,31000)	GeneWise	cds	10815	10860	0.00	+	1	GL193041.1:subseq(532369,31000)-genewise-prediction-1
GL193041.1:subseq(532369,31000)	GeneWise	match	10865	11033	53.25	+	.	GL193041.1:subseq(532369,31000)-genewise-prediction-2
GL193041.1:subseq(532369,31000)	GeneWise	cds	10865	10924	0.00	+	0	GL193041.1:subseq(532369,31000)-genewise-prediction-2
GL193041.1:subseq(532369,31000)	GeneWise	intron	10925	11003	0.00	+	.	GL193041.1:subseq(532369,31000)-genewise-prediction-2