Find start end points: [0,10001][248,24386] Score 152782
Recovering alignment: Alignment recoveredExplicit read offffe 60%

genewise output
Score 440.84 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

Information
	Name GL192442.1:subseq(1947934,34400) is longer than allowed name
block (15). Truncating

SPP00000001_1.0    1 MGLPQPGLWLKRLWVLLEVAVHVVVGKVLLILFPDRVKRNILAMGEKTG 
                     MGL +PGLWLKRLWV L+VA+HV VGKV LILFP+RVK+ +LAM +K   
                     MGLSRPGLWLKRLWVFLQVAMHVAVGKVFLILFPERVKQQVLAMNQK-- 
GL192442.1:subs10000 agctacgctcaactgttcggacggggagtcactcgagaccgtgaaca   
                     tgtcgcgtgtagtgtttatctatctgattttttcagtaaattctaaa   
                     gggcgaggggggcgccgggcgcgcgcagcgagtcgacgaacgcgcgg   


SPP00000001_1.0   50 MTRNPHFSHDNWIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVV 
                        NPHFS+DNW+PTF+  QYFWFVLKVRWQRLED TE GGLAPNCPVV 
                     ---NPHFSYDNWLPTFYGMQYFWFVLKVRWQRLEDRTEPGGLAPNCPVV 
GL192442.1:subs10141    acctttgatccattgacttttgcagctcccggaagcggcgcatcgg 
                        acatcaaagtcctagtaatgtttatggagtaagcacggtccagctt 
                        tcctctccgcgccccggtcgtcggcaggaagcgtgcgtgcccctgc 


SPP00000001_1.0   99 RLSGQRCNIWEFMQ                          NRPLVLNFG 
                     +LSGQ CNIW+FMQ                          NRPLVLNFG 
                     QLSGQSCNIWDFMQ          G:G[ggc]        NRPLVLNFG 
GL192442.1:subs10279 cctgcataatgtacGGTCAGGA  Intron 1   CAGGCaactgcatg 
                     atcgaggatgatta <1-----[10322:17504]-1>  agctttatg 
                     gcaagccctgccga                          cgagggtta 


SPP00000001_1.0  123 SCTXPSFMFKFDQFKRLIEDFSSIADFLVIYIEEAHAS            
                     SCTXPSF+FKFDQFKRL+EDF S ADFL+IYIEEAHAS            
                     SCTXPSFLFKFDQFKRLVEDFCSTADFLIIYIEEAHAS            
GL192442.1:subs17534 atatcttctatgctaacgggtttaggtcaatagggcgt            
                     ggcgcctttataatagttaatgcccattttataacacc            
                     ttcatattcatcacgattactccaacccctccgaacaa            


SPP00000001_1.0  161                           GWAFKNNMDIRNHQNLQDRLQAA 
                                               GWAFKNN++IR H+NLQDRLQAA 
                               D:D[gat]        GWAFKNNVNIRTHRNLQDRLQAA 
GL192442.1:subs17648 GGTACAGA  Intron 2   TAGATgtgtaaagaaaaccaccgcccgg 
                      <1-----[17649:21949]-1>  ggctaaatatgcagataagtacc 
                                               cgttgctgccgtcgtcgtcggcc 


SPP00000001_1.0  185 HLLLARSPQCPVVVDTMQNQSSQLYAALPERLYIIQEGRILYK       
                      LLL R+P+CPVVVDTM+N+S+  YAALPERLY+++EGRILYK       
                     RLLLDRTPRCPVVVDTMENESNWRYAALPERLYVLREGRILYK       
GL192442.1:subs22021 ctccgaacctcggggaagagaatctggccgactgccggaacta       
                     gtttagccggctttactaaagaggacctcagtattgaggttaa       
                     cgggcgccgccgggcaggcaccgccaggcggccgcggcgcccg       


SPP00000001_1.0  228                        GKSGPWNYNPEEVRAVLEKLHS     
                                            GKSGPWNY+PEEVRAVLEKLHS     
                                            GKSGPWNYHPEEVRAVLEKLHS     
GL192442.1:subs22150 GTGACTG  Intron 3   CAGgatgctatccgggcggcgacca     
                     <0-----[22150:24321]-0>gacgcgaaacaatgcttaatag     
                                            tatctgcccagactttgggcct     


//
Making a G in phase 1 intron
Making a D in phase 1 intron
>GL192442.1:subseq(1947934,34400).pep
MGLSRPGLWLKRLWVFLQVAMHVAVGKVFLILFPERVKQQVLAMNQKNPHFSYDNWLPTF
YGMQYFWFVLKVRWQRLEDRTEPGGLAPNCPVVQLSGQSCNIWDFMQGNRPLVLNFGSCT
XPSFLFKFDQFKRLVEDFCSTADFLIIYIEEAHASDGWAFKNNVNIRTHRNLQDRLQAAR
LLLDRTPRCPVVVDTMENESNWRYAALPERLYVLREGRILYKGKSGPWNYHPEEVRAVLE
KLHS
//
>GL192442.1:subseq(1947934,34400).[10000:24387].sp
ATGGGGCTGTCCAGGCCAGGGCTGTGGCTGAAGAGGCTCTGGGTCTTCTTGCAGGTGGCC
ATGCACGTGGCCGTGGGCAAAGTGTTCCTGATACTGTTTCCCGAGAGAGTCAAGCAACAA
GTCTTGGCCATGAACCAGAAGAATCCCCACTTTTCCTATGACAACTGGCTCCCGACCTTC
TACGGCATGCAGTATTTCTGGTTTGTCCTGAAGGTCCGATGGCAGCGACTAGAGGACAGG
ACTGAGCCCGGGGGTCTGGCCCCCAACTGCCCTGTGGTCCAGCTCTCAGGACAGAGCTGC
AACATTTGGGACTTCATGCAAGGCAACAGGCCATTGGTGCTGAATTTTGGAAGTTGTACC
TGACCTTCATTTCTTTTCAAATTTGACCAATTCAAGAGACTTGTTGAAGACTTTTGCTCC
ACAGCAGACTTCCTCATCATTTACATCGAGGAAGCACACGCATCAGATGGCTGGGCTTTT
AAGAACAATGTGAACATCAGGACTCACCGGAATCTCCAGGATCGCCTGCAGGCCGCCCGC
TTGCTGCTGGACAGGACCCCCCGGTGCCCCGTGGTGGTGGACACAATGGAGAACGAAAGC
AACTGGCGCTACGCAGCGCTGCCCGAGAGGCTCTACGTGCTCCGGGAGGGCAGGATCCTC
TACAAGGGTAAATCTGGCCCTTGGAACTACCACCCAGAGGAAGTCCGTGCTGTTCTGGAG
AAGCTCCACAGT
//
GL192442.1:subseq(1947934,34400)	GeneWise	match	10000	24387	444.83	+	.	GL192442.1:subseq(1947934,34400)-genewise-prediction-1
GL192442.1:subseq(1947934,34400)	GeneWise	cds	10000	10321	0.00	+	0	GL192442.1:subseq(1947934,34400)-genewise-prediction-1
GL192442.1:subseq(1947934,34400)	GeneWise	intron	10322	17504	0.00	+	.	GL192442.1:subseq(1947934,34400)-genewise-prediction-1
GL192442.1:subseq(1947934,34400)	GeneWise	cds	17505	17648	0.00	+	2	GL192442.1:subseq(1947934,34400)-genewise-prediction-1
GL192442.1:subseq(1947934,34400)	GeneWise	intron	17649	21949	0.00	+	.	GL192442.1:subseq(1947934,34400)-genewise-prediction-1
GL192442.1:subseq(1947934,34400)	GeneWise	cds	21950	22149	0.00	+	2	GL192442.1:subseq(1947934,34400)-genewise-prediction-1
GL192442.1:subseq(1947934,34400)	GeneWise	intron	22150	24321	0.00	+	.	GL192442.1:subseq(1947934,34400)-genewise-prediction-1
GL192442.1:subseq(1947934,34400)	GeneWise	cds	24322	24387	0.00	+	0	GL192442.1:subseq(1947934,34400)-genewise-prediction-1
x