Sequence        		tRNA	Bounds	tRNA	Anti	Intron Bounds	Cove
Name            	tRNA #	Begin	End 	Type	Codon	Begin	End	Score
--------        	------	----	------	----	-----	-----	----	------
PHYCAscaffold_1 	1	1880375	1880296	Leu	AAG	0	0	63.02
PHYCAscaffold_1 	2	1876181	1876102	Leu	AAG	0	0	63.02
PHYCAscaffold_1 	3	1875459	1875380	Leu	AAG	0	0	63.02
PHYCAscaffold_1 	4	1874737	1874658	Leu	AAG	0	0	63.02
PHYCAscaffold_1 	5	1874016	1873937	Leu	AAG	0	0	63.02
PHYCAscaffold_1 	6	1873303	1873224	Leu	AAG	0	0	63.02
PHYCAscaffold_1 	7	1869110	1869031	Leu	AAG	0	0	63.02
PHYCAscaffold_1 	8	1868387	1868308	Leu	AAG	0	0	63.02
PHYCAscaffold_1 	9	1867665	1867586	Leu	AAG	0	0	63.02
PHYCAscaffold_1 	10	1866943	1866864	Leu	AAG	0	0	63.02
PHYCAscaffold_1 	11	1866229	1866150	Leu	AAG	0	0	63.02
PHYCAscaffold_1 	12	1865507	1865428	Leu	AAG	0	0	63.02
PHYCAscaffold_1 	13	1864785	1864706	Leu	AAG	0	0	63.02
PHYCAscaffold_1 	14	1864063	1863984	Leu	AAG	0	0	63.02
PHYCAscaffold_1 	15	693957	693887	Undet	???	0	0	47.87
PHYCAscaffold_2 	1	205741	205814	His	ATG	0	0	34.10
PHYCAscaffold_2 	2	664028	664100	Ala	AGC	0	0	45.76
PHYCAscaffold_2 	3	1792724	1792796	Glu	CTC	0	0	68.34
PHYCAscaffold_2 	4	1820705	1820633	Glu	CTC	0	0	72.95
PHYCAscaffold_2 	5	1820106	1820034	Glu	CTC	0	0	72.95
PHYCAscaffold_2 	6	1819509	1819437	Glu	CTC	0	0	72.95
PHYCAscaffold_2 	7	1818910	1818838	Glu	CTC	0	0	66.75
PHYCAscaffold_2 	8	1818311	1818239	Glu	CTC	0	0	69.95
PHYCAscaffold_2 	9	1817714	1817642	Glu	CTC	0	0	72.95
PHYCAscaffold_2 	10	1816518	1816446	Glu	CTC	0	0	73.17
PHYCAscaffold_2 	11	1815920	1815848	Glu	CTC	0	0	70.37
PHYCAscaffold_2 	12	1815322	1815250	Glu	CTC	0	0	72.95
PHYCAscaffold_2 	13	1814723	1814651	Glu	CTC	0	0	72.95
PHYCAscaffold_2 	14	1814126	1814054	Glu	CTC	0	0	66.04
PHYCAscaffold_2 	15	1813527	1813455	Glu	CTC	0	0	72.95
PHYCAscaffold_2 	16	1812928	1812856	Glu	CTC	0	0	72.95
PHYCAscaffold_2 	17	1812329	1812257	Glu	CTC	0	0	66.68
PHYCAscaffold_2 	18	1811731	1811659	Glu	CTC	0	0	72.95
PHYCAscaffold_2 	19	1810802	1810730	Glu	CTC	0	0	72.95
PHYCAscaffold_2 	20	1810203	1810131	Glu	CTC	0	0	72.95
PHYCAscaffold_2 	21	1809604	1809532	Glu	CTC	0	0	72.95
PHYCAscaffold_2 	22	1809005	1808933	Glu	CTC	0	0	72.95
PHYCAscaffold_2 	23	1808406	1808334	Glu	CTC	0	0	51.91
PHYCAscaffold_2 	24	1807807	1807735	Glu	CTC	0	0	72.95
PHYCAscaffold_2 	25	1807208	1807135	Glu	CTC	0	0	64.03
PHYCAscaffold_2 	26	1806618	1806546	Glu	CTC	0	0	72.95
PHYCAscaffold_2 	27	1806019	1805947	Glu	CTC	0	0	72.95
PHYCAscaffold_2 	28	1805420	1805348	Glu	CTC	0	0	72.95
PHYCAscaffold_2 	29	1804821	1804749	Glu	CTC	0	0	72.95
PHYCAscaffold_2 	30	1804222	1804150	Glu	CTC	0	0	72.95
PHYCAscaffold_2 	31	1803623	1803551	Glu	CTC	0	0	72.95
PHYCAscaffold_2 	32	1803024	1802952	Glu	CTC	0	0	72.95
PHYCAscaffold_2 	33	1802095	1802023	Glu	CTC	0	0	72.95
PHYCAscaffold_2 	34	1801496	1801424	Glu	CTC	0	0	72.95
PHYCAscaffold_2 	35	1800897	1800826	Glu	CTC	0	0	59.49
PHYCAscaffold_3 	1	912747	912828	Leu	CAA	0	0	67.02
PHYCAscaffold_3 	2	913770	913851	Leu	CAA	0	0	67.02
PHYCAscaffold_3 	3	914793	914874	Leu	CAA	0	0	67.02
PHYCAscaffold_3 	4	915816	915897	Leu	CAA	0	0	67.02
PHYCAscaffold_3 	5	916834	916915	Leu	CAA	0	0	67.02
PHYCAscaffold_3 	6	917857	917938	Leu	CAA	0	0	67.02
PHYCAscaffold_3 	7	925830	925911	Leu	CAA	0	0	67.02
PHYCAscaffold_3 	8	944768	944849	Leu	CAA	0	0	59.58
PHYCAscaffold_3 	9	1253606	1253534	Lys	TTT	0	0	43.78
PHYCAscaffold_3 	10	895 	731 	Undet	???	0	0	22.80
PHYCAscaffold_3 	11	405 	335 	Gly	GCC	0	0	73.01
PHYCAscaffold_4 	1	1358293	1358359	Undet	???	0	0	45.41
PHYCAscaffold_4 	2	702425	702355	Undet	???	0	0	42.51
PHYCAscaffold_5 	1	1585429	1585501	Val	AAC	0	0	69.47
PHYCAscaffold_5 	2	1588104	1588176	Val	AAC	0	0	69.47
PHYCAscaffold_5 	3	1588541	1588621	Ser	AGA	0	0	79.23
PHYCAscaffold_5 	4	1223378	1223307	Thr	AGT	0	0	73.22
PHYCAscaffold_5 	5	1222920	1222849	Thr	AGT	0	0	73.22
PHYCAscaffold_5 	6	1222466	1222395	Thr	AGT	0	0	73.22
PHYCAscaffold_5 	7	1222006	1221935	Thr	AGT	0	0	73.22
PHYCAscaffold_5 	8	1221543	1221472	Thr	AGT	0	0	73.22
PHYCAscaffold_5 	9	1221092	1221021	Thr	AGT	0	0	73.22
PHYCAscaffold_5 	10	1220627	1220556	Thr	AGT	0	0	73.22
PHYCAscaffold_5 	11	1220168	1220097	Thr	AGT	0	0	70.20
PHYCAscaffold_5 	12	1219710	1219639	Thr	AGT	0	0	73.22
PHYCAscaffold_5 	13	1215904	1215833	Thr	AGT	0	0	73.22
PHYCAscaffold_5 	14	1215446	1215375	Thr	AGT	0	0	73.22
PHYCAscaffold_5 	15	1214994	1214923	Thr	AGT	0	0	73.22
PHYCAscaffold_5 	16	1214543	1214472	Thr	AGT	0	0	73.22
PHYCAscaffold_5 	17	1214080	1214009	Thr	AGT	0	0	73.22
PHYCAscaffold_5 	18	1202875	1202804	Thr	AGT	0	0	73.22
PHYCAscaffold_5 	19	1202424	1202353	Thr	AGT	0	0	73.22
PHYCAscaffold_5 	20	1199517	1199446	Thr	AGT	0	0	73.22
PHYCAscaffold_7 	1	298630	298702	Arg	TCG	0	0	68.33
PHYCAscaffold_7 	2	788034	787964	Ile	GAT	0	0	44.25
PHYCAscaffold_7 	3	294837	294765	Arg	TCG	0	0	68.33
PHYCAscaffold_8 	1	268818	268889	Pro	AGG	0	0	71.65
PHYCAscaffold_8 	2	269204	269275	Pro	AGG	0	0	71.65
PHYCAscaffold_8 	3	269594	269665	Pro	AGG	0	0	71.65
PHYCAscaffold_8 	4	269982	270053	Pro	AGG	0	0	71.65
PHYCAscaffold_8 	5	270370	270441	Pro	AGG	0	0	71.65
PHYCAscaffold_8 	6	270747	270818	Pro	AGG	0	0	71.65
PHYCAscaffold_8 	7	964515	964586	Thr	TGT	0	0	80.39
PHYCAscaffold_8 	8	965587	965658	Thr	TGT	0	0	80.39
PHYCAscaffold_8 	9	966659	966730	Thr	TGT	0	0	80.39
PHYCAscaffold_8 	10	967717	967788	Thr	TGT	0	0	80.39
PHYCAscaffold_8 	11	969863	969934	Thr	TGT	0	0	80.39
PHYCAscaffold_8 	12	970935	971006	Thr	TGT	0	0	80.39
PHYCAscaffold_8 	13	972007	972078	Thr	TGT	0	0	80.39
PHYCAscaffold_8 	14	258912	258839	Pseudo	TCG	0	0	46.75
PHYCAscaffold_9 	1	588621	588692	Gln	CTG	0	0	73.31
PHYCAscaffold_9 	2	589336	589407	Gln	TTG	0	0	73.74
PHYCAscaffold_9 	3	589516	589587	Gln	CTG	0	0	73.31
PHYCAscaffold_9 	4	590231	590302	Gln	TTG	0	0	73.74
PHYCAscaffold_9 	5	590411	590482	Gln	CTG	0	0	73.31
PHYCAscaffold_9 	6	591126	591197	Gln	TTG	0	0	73.74
PHYCAscaffold_9 	7	591306	591377	Gln	CTG	0	0	73.31
PHYCAscaffold_9 	8	592022	592093	Gln	TTG	0	0	60.84
PHYCAscaffold_9 	9	592669	592740	Gln	TTG	0	0	73.74
PHYCAscaffold_9 	10	592849	592920	Gln	CTG	0	0	73.31
PHYCAscaffold_9 	11	593563	593634	Gln	TTG	0	0	73.74
PHYCAscaffold_9 	12	593743	593814	Gln	CTG	0	0	73.31
PHYCAscaffold_9 	13	594456	594527	Gln	TTG	0	0	67.42
PHYCAscaffold_9 	14	594636	594707	Gln	CTG	0	0	73.31
PHYCAscaffold_9 	15	595349	595420	Gln	TTG	0	0	73.74
PHYCAscaffold_9 	16	595529	595600	Gln	CTG	0	0	73.31
PHYCAscaffold_9 	17	596242	596313	Gln	TTG	0	0	73.74
PHYCAscaffold_9 	18	596422	596493	Gln	CTG	0	0	73.31
PHYCAscaffold_9 	19	597136	597206	Undet	???	0	0	64.30
PHYCAscaffold_9 	20	597315	597386	Gln	CTG	0	0	73.31
PHYCAscaffold_9 	21	598028	598099	Gln	TTG	0	0	73.74
PHYCAscaffold_9 	22	598208	598279	Gln	CTG	0	0	73.31
PHYCAscaffold_9 	23	598921	598992	Gln	TTG	0	0	73.74
PHYCAscaffold_9 	24	599101	599171	Gln	CTG	0	0	64.22
PHYCAscaffold_9 	25	599815	599886	Gln	TTG	0	0	73.74
PHYCAscaffold_9 	26	599995	600066	Gln	CTG	0	0	73.31
PHYCAscaffold_9 	27	600711	600782	Gln	TTG	0	0	73.74
PHYCAscaffold_9 	28	600891	600962	Gln	CTG	0	0	73.31
PHYCAscaffold_9 	29	601605	601676	Gln	TTG	0	0	73.74
PHYCAscaffold_9 	30	601785	601856	Gln	CTG	0	0	73.31
PHYCAscaffold_9 	31	602499	602570	Gln	TTG	0	0	73.74
PHYCAscaffold_9 	32	602679	602750	Gln	CTG	0	0	73.31
PHYCAscaffold_10	1	413648	413720	Arg	CCG	0	0	62.15
PHYCAscaffold_10	2	413224	413152	Arg	CCG	0	0	62.15
PHYCAscaffold_11	1	7628	7705	Leu	TAG	0	0	66.83
PHYCAscaffold_12	1	716980	717052	Arg	CCG	0	0	62.15
PHYCAscaffold_13	1	75659	75728	Undet	???	0	0	47.48
PHYCAscaffold_13	2	1008	936 	Arg	TCG	0	0	68.33
PHYCAscaffold_14	1	579296	579376	Ser	TGA	0	0	78.34
PHYCAscaffold_14	2	1100284	1100212	Arg	ACG	0	0	65.99
PHYCAscaffold_14	3	1099530	1099458	Arg	ACG	0	0	65.99
PHYCAscaffold_14	4	1098015	1097943	Arg	ACG	0	0	65.99
PHYCAscaffold_14	5	1096517	1096445	Arg	ACG	0	0	65.99
PHYCAscaffold_14	6	1094332	1094260	Arg	ACG	0	0	65.99
PHYCAscaffold_14	7	1068147	1068075	Arg	ACG	0	0	65.99
PHYCAscaffold_14	8	1066651	1066579	Arg	ACG	0	0	65.99
PHYCAscaffold_14	9	1065897	1065825	Arg	ACG	0	0	65.99
PHYCAscaffold_14	10	1065148	1065076	Arg	ACG	0	0	65.99
PHYCAscaffold_14	11	1064399	1064327	Arg	ACG	0	0	65.99
PHYCAscaffold_14	12	1063649	1063577	Arg	ACG	0	0	65.99
PHYCAscaffold_14	13	1062895	1062823	Arg	ACG	0	0	65.99
PHYCAscaffold_14	14	1062142	1062070	Arg	ACG	0	0	65.99
PHYCAscaffold_14	15	1061388	1061316	Arg	ACG	0	0	65.99
PHYCAscaffold_14	16	1060609	1060537	Pseudo	ACG	0	0	45.22
PHYCAscaffold_14	17	1059104	1059032	Arg	ACG	0	0	65.99
PHYCAscaffold_14	18	1058354	1058282	Arg	ACG	0	0	65.99
PHYCAscaffold_14	19	1057609	1057537	Arg	ACG	0	0	65.99
PHYCAscaffold_14	20	1056863	1056791	Arg	ACG	0	0	65.99
PHYCAscaffold_14	21	1056105	1056033	Arg	ACG	0	0	65.99
PHYCAscaffold_14	22	1031762	1031690	Arg	ACG	0	0	65.99
PHYCAscaffold_14	23	1031015	1030943	Arg	ACG	0	0	65.99
PHYCAscaffold_14	24	1030265	1030193	Arg	ACG	0	0	65.99
PHYCAscaffold_14	25	1029452	1029380	Arg	ACG	0	0	51.66
PHYCAscaffold_14	26	1028703	1028631	Arg	ACG	0	0	65.99
PHYCAscaffold_14	27	1027951	1027879	Arg	ACG	0	0	65.99
PHYCAscaffold_14	28	1027189	1027117	Arg	ACG	0	0	65.99
PHYCAscaffold_14	29	1026438	1026368	Arg	ACG	0	0	49.93
PHYCAscaffold_14	30	1025693	1025621	Arg	ACG	0	0	65.99
PHYCAscaffold_14	31	1024946	1024874	Arg	ACG	0	0	65.99
PHYCAscaffold_14	32	1024199	1024127	Arg	ACG	0	0	65.99
PHYCAscaffold_15	1	1747	1662	Leu	TAA	0	0	63.39
PHYCAscaffold_15	2	289 	203 	Leu	TAA	0	0	56.17
PHYCAscaffold_16	1	850546	850618	Arg	TCG	0	0	68.33
PHYCAscaffold_16	2	855544	855616	Val	CAC	0	0	70.53
PHYCAscaffold_16	3	856157	856229	Val	CAC	0	0	70.53
PHYCAscaffold_16	4	856770	856842	Val	CAC	0	0	70.53
PHYCAscaffold_16	5	857383	857455	Val	CAC	0	0	70.53
PHYCAscaffold_16	6	865861	865933	Arg	TCG	0	0	68.66
PHYCAscaffold_16	7	965861	965791	Gly	GCC	0	0	73.01
PHYCAscaffold_16	8	849337	849265	Val	CAC	0	0	70.53
PHYCAscaffold_16	9	848724	848652	Val	CAC	0	0	70.53
PHYCAscaffold_16	10	848111	848039	Val	CAC	0	0	70.53
PHYCAscaffold_16	11	847498	847426	Val	CAC	0	0	70.53
PHYCAscaffold_16	12	846885	846813	Val	CAC	0	0	70.53
PHYCAscaffold_16	13	846272	846200	Val	CAC	0	0	70.53
PHYCAscaffold_16	14	845659	845587	Val	CAC	0	0	70.53
PHYCAscaffold_16	15	845046	844974	Val	CAC	0	0	70.53
PHYCAscaffold_16	16	844433	844361	Val	CAC	0	0	70.53
PHYCAscaffold_16	17	843820	843748	Val	CAC	0	0	70.53
PHYCAscaffold_16	18	843207	843135	Val	CAC	0	0	70.53
PHYCAscaffold_16	19	842594	842522	Val	CAC	0	0	70.53
PHYCAscaffold_16	20	841982	841910	Val	CAC	0	0	70.53
PHYCAscaffold_16	21	841369	841297	Val	CAC	0	0	70.53
PHYCAscaffold_16	22	840756	840684	Val	CAC	0	0	70.53
PHYCAscaffold_16	23	840143	840071	Val	CAC	0	0	70.53
PHYCAscaffold_16	24	839530	839458	Val	CAC	0	0	70.53
PHYCAscaffold_16	25	838217	838145	Val	CAC	0	0	70.53
PHYCAscaffold_16	26	837604	837532	Val	CAC	0	0	70.53
PHYCAscaffold_16	27	814552	814480	Val	CAC	0	0	70.53
PHYCAscaffold_16	28	813941	813869	Val	CAC	0	0	70.53
PHYCAscaffold_16	29	813328	813256	Val	CAC	0	0	70.53
PHYCAscaffold_17	1	875951	876022	Thr	CGT	0	0	76.20
PHYCAscaffold_17	2	894159	894230	Thr	CGT	0	0	72.64
PHYCAscaffold_17	3	898393	898464	Trp	CCA	0	0	69.87
PHYCAscaffold_17	4	900345	900416	Trp	CCA	0	0	69.87
PHYCAscaffold_17	5	902380	902451	Trp	CCA	0	0	69.87
PHYCAscaffold_17	6	922550	922621	Trp	CCA	0	0	69.87
PHYCAscaffold_17	7	924509	924580	Trp	CCA	0	0	69.87
PHYCAscaffold_17	8	926768	926839	Trp	CCA	0	0	69.87
PHYCAscaffold_17	9	928706	928777	Trp	CCA	0	0	69.87
PHYCAscaffold_17	10	930660	930731	Trp	CCA	0	0	69.87
PHYCAscaffold_17	11	935926	935997	Trp	CCA	0	0	69.87
PHYCAscaffold_17	12	936520	936440	Ser	GCT	0	0	75.61
PHYCAscaffold_17	13	935518	935447	Thr	CGT	0	0	76.20
PHYCAscaffold_17	14	934559	934479	Ser	GCT	0	0	72.16
PHYCAscaffold_17	15	933558	933487	Thr	CGT	0	0	76.20
PHYCAscaffold_17	16	931257	931177	Ser	GCT	0	0	75.61
PHYCAscaffold_17	17	930252	930181	Thr	CGT	0	0	76.20
PHYCAscaffold_17	18	929303	929223	Ser	GCT	0	0	75.61
PHYCAscaffold_17	19	928325	928254	Thr	CGT	0	0	76.20
PHYCAscaffold_17	20	927366	927286	Ser	GCT	0	0	75.61
PHYCAscaffold_17	21	926070	925999	Thr	CGT	0	0	76.20
PHYCAscaffold_17	22	925110	925030	Ser	GCT	0	0	75.61
PHYCAscaffold_17	23	924089	924018	Thr	CGT	0	0	76.20
PHYCAscaffold_17	24	923152	923072	Ser	GCT	0	0	75.61
PHYCAscaffold_17	25	922133	922062	Thr	CGT	0	0	76.20
PHYCAscaffold_17	26	902981	902901	Ser	GCT	0	0	75.61
PHYCAscaffold_17	27	901963	901892	Thr	CGT	0	0	76.20
PHYCAscaffold_17	28	900942	900862	Ser	GCT	0	0	75.61
PHYCAscaffold_17	29	899937	899866	Thr	CGT	0	0	76.20
PHYCAscaffold_17	30	898987	898907	Ser	GCT	0	0	75.61
PHYCAscaffold_17	31	897985	897914	Thr	CGT	0	0	76.20
PHYCAscaffold_17	32	897025	896945	Ser	GCT	0	0	75.61
PHYCAscaffold_17	33	875564	875493	Trp	CCA	0	0	72.44
PHYCAscaffold_20	1	496771	496843	Val	TAC	0	0	79.73
PHYCAscaffold_20	2	508857	508928	Pro	CGG	0	0	78.17
PHYCAscaffold_20	3	509405	509476	Pro	CGG	0	0	78.17
PHYCAscaffold_20	4	509954	510025	Pro	CGG	0	0	78.17
PHYCAscaffold_20	5	510501	510572	Pro	CGG	0	0	78.17
PHYCAscaffold_20	6	534766	534695	Pro	CGG	0	0	78.17
PHYCAscaffold_20	7	507776	507699	Leu	TAG	0	0	66.83
PHYCAscaffold_20	8	507258	507186	Val	TAC	0	0	79.73
PHYCAscaffold_20	9	506948	506871	Leu	TAG	0	0	66.83
PHYCAscaffold_21	1	366596	366667	Ala	TGC	0	0	81.02
PHYCAscaffold_21	2	367238	367309	Ala	TGC	0	0	81.02
PHYCAscaffold_21	3	367874	367945	Ala	TGC	0	0	81.02
PHYCAscaffold_21	4	369146	369217	Ala	TGC	0	0	81.02
PHYCAscaffold_21	5	369788	369857	Ala	TGC	0	0	63.91
PHYCAscaffold_21	6	370428	370499	Ala	TGC	0	0	81.02
PHYCAscaffold_21	7	371070	371141	Ala	TGC	0	0	81.02
PHYCAscaffold_21	8	371711	371782	Ala	TGC	0	0	81.02
PHYCAscaffold_21	9	372353	372424	Ala	TGC	0	0	81.02
PHYCAscaffold_21	10	372994	373063	Ala	TGC	0	0	64.09
PHYCAscaffold_21	11	373634	373705	Ala	TGC	0	0	81.02
PHYCAscaffold_21	12	374276	374346	Ala	TGC	0	0	67.91
PHYCAscaffold_21	13	374912	374983	Ala	TGC	0	0	81.02
PHYCAscaffold_21	14	375549	375620	Ala	TGC	0	0	81.02
PHYCAscaffold_21	15	376191	376261	Undet	???	0	0	71.71
PHYCAscaffold_21	16	376830	376901	Ala	TGC	0	0	81.02
PHYCAscaffold_21	17	377471	377542	Ala	TGC	0	0	81.02
PHYCAscaffold_21	18	378755	378826	Ala	TGC	0	0	81.02
PHYCAscaffold_21	19	379397	379468	Ala	TGC	0	0	81.02
PHYCAscaffold_21	20	380039	380110	Ala	TGC	0	0	81.02
PHYCAscaffold_21	21	380676	380747	Ala	TGC	0	0	81.02
PHYCAscaffold_21	22	381318	381389	Ala	TGC	0	0	72.26
PHYCAscaffold_21	23	381960	382032	Pseudo	TGC	0	0	37.82
PHYCAscaffold_21	24	392727	392799	Ala	TGC	0	0	57.22
PHYCAscaffold_21	25	393370	393441	Ala	TGC	0	0	81.02
PHYCAscaffold_21	26	393997	394068	Ala	TGC	0	0	81.02
PHYCAscaffold_21	27	394635	394706	Ala	TGC	0	0	81.02
PHYCAscaffold_21	28	395277	395348	Ala	TGC	0	0	81.02
PHYCAscaffold_21	29	395918	395990	Pseudo	TGC	0	0	37.82
PHYCAscaffold_21	30	716772	716692	Ser	TGA	0	0	78.34
PHYCAscaffold_22	1	838521	838449	Arg	CCT	0	0	70.63
PHYCAscaffold_22	2	505351	505280	Cys	GCA	0	0	75.94
PHYCAscaffold_22	3	504770	504699	Cys	GCA	0	0	75.94
PHYCAscaffold_23	1	461480	461552	Lys	TTT	0	0	78.41
PHYCAscaffold_23	2	466255	466327	Lys	TTT	0	0	78.41
PHYCAscaffold_23	3	467308	467380	Lys	TTT	0	0	78.41
PHYCAscaffold_23	4	470308	470380	Lys	TTT	0	0	78.41
PHYCAscaffold_23	5	471363	471435	Lys	TTT	0	0	78.41
PHYCAscaffold_23	6	480224	480152	Arg	TCT	0	0	71.29
PHYCAscaffold_24	1	696331	696402	Met	CAT	0	0	70.47
PHYCAscaffold_24	2	703588	703659	Met	CAT	0	0	70.47
PHYCAscaffold_24	3	704129	704200	Met	CAT	0	0	70.47
PHYCAscaffold_24	4	704709	704780	Met	CAT	0	0	70.47
PHYCAscaffold_24	5	705248	705319	Met	CAT	0	0	70.47
PHYCAscaffold_24	6	705789	705860	Met	CAT	0	0	70.47
PHYCAscaffold_24	7	706364	706435	Met	CAT	0	0	70.47
PHYCAscaffold_24	8	716315	716386	Met	CAT	0	0	70.47
PHYCAscaffold_29	1	336952	337024	Arg	TCT	0	0	71.29
PHYCAscaffold_29	2	112323	112251	Val	TAC	0	0	81.21
PHYCAscaffold_30	1	653617	653545	Ala	AGC	0	0	62.90
PHYCAscaffold_30	2	653543	653472	His	GTG	0	0	62.47
PHYCAscaffold_33	1	625251	625323	Met	CAT	0	0	80.73
PHYCAscaffold_33	2	625988	626060	Met	CAT	0	0	80.73
PHYCAscaffold_33	3	626731	626803	Met	CAT	0	0	80.73
PHYCAscaffold_33	4	627469	627541	Met	CAT	0	0	80.73
PHYCAscaffold_33	5	630518	630590	Met	CAT	0	0	80.73
PHYCAscaffold_33	6	631256	631328	Met	CAT	0	0	80.73
PHYCAscaffold_33	7	631994	632066	Met	CAT	0	0	80.73
PHYCAscaffold_33	8	632732	632804	Met	CAT	0	0	80.73
PHYCAscaffold_33	9	633467	633539	Met	CAT	0	0	80.73
PHYCAscaffold_33	10	634204	634276	Met	CAT	0	0	73.81
PHYCAscaffold_33	11	634942	635014	Met	CAT	0	0	80.73
PHYCAscaffold_33	12	635599	635671	Met	CAT	0	0	80.73
PHYCAscaffold_33	13	636256	636328	Met	CAT	0	0	80.73
PHYCAscaffold_33	14	636994	637066	Met	CAT	0	0	80.73
PHYCAscaffold_33	15	637731	637803	Met	CAT	0	0	80.73
PHYCAscaffold_33	16	638469	638541	Met	CAT	0	0	80.73
PHYCAscaffold_33	17	639207	639279	Met	CAT	0	0	80.73
PHYCAscaffold_33	18	639946	640018	Met	CAT	0	0	80.73
PHYCAscaffold_33	19	640683	640755	Met	CAT	0	0	80.73
PHYCAscaffold_34	1	515146	515074	Ile	AAT	0	0	74.36
PHYCAscaffold_34	2	514053	513981	Ile	AAT	0	0	74.36
PHYCAscaffold_34	3	513506	513434	Ile	AAT	0	0	74.36
PHYCAscaffold_34	4	512412	512340	Ile	AAT	0	0	74.36
PHYCAscaffold_34	5	511335	511263	Ile	AAT	0	0	74.36
PHYCAscaffold_34	6	510787	510715	Ile	AAT	0	0	74.36
PHYCAscaffold_34	7	510240	510168	Ile	AAT	0	0	74.36
PHYCAscaffold_34	8	509693	509621	Ile	AAT	0	0	74.36
PHYCAscaffold_34	9	509146	509074	Ile	AAT	0	0	74.36
PHYCAscaffold_34	10	508599	508527	Ile	AAT	0	0	74.36
PHYCAscaffold_34	11	507963	507891	Ile	AAT	0	0	74.36
PHYCAscaffold_34	12	507417	507345	Ile	AAT	0	0	74.36
PHYCAscaffold_34	13	506871	506799	Ile	AAT	0	0	74.36
PHYCAscaffold_34	14	506325	506253	Ile	AAT	0	0	74.36
PHYCAscaffold_34	15	505777	505705	Ile	AAT	0	0	74.36
PHYCAscaffold_34	16	505230	505158	Ile	AAT	0	0	74.36
PHYCAscaffold_34	17	494676	494604	Ile	AAT	0	0	74.36
PHYCAscaffold_36	1	62057	62125	Lys	TTT	0	0	64.72
PHYCAscaffold_38	1	298073	297970	Tyr	GTA	298036	298006	74.34
PHYCAscaffold_38	2	297311	297208	Tyr	GTA	297274	297244	74.34
PHYCAscaffold_38	3	296538	296435	Tyr	GTA	296501	296471	74.34
PHYCAscaffold_38	4	295765	295662	Tyr	GTA	295728	295698	74.34
PHYCAscaffold_38	5	295002	294899	Tyr	GTA	294965	294935	74.34
PHYCAscaffold_38	6	294207	294104	Tyr	GTA	294170	294140	74.34
PHYCAscaffold_38	7	293394	293291	Tyr	GTA	293357	293327	74.34
PHYCAscaffold_38	8	292621	292518	Tyr	GTA	292584	292554	74.34
PHYCAscaffold_38	9	291859	291756	Tyr	GTA	291822	291792	74.34
PHYCAscaffold_39	1	326240	326311	Thr	TGT	0	0	47.40
PHYCAscaffold_40	1	42832	42760	Asn	GTT	0	0	78.23
PHYCAscaffold_40	2	42060	41988	Asn	GTT	0	0	78.23
PHYCAscaffold_40	3	41289	41217	Asn	GTT	0	0	78.23
PHYCAscaffold_40	4	40517	40445	Asn	GTT	0	0	78.23
PHYCAscaffold_40	5	39746	39674	Asn	GTT	0	0	78.23
PHYCAscaffold_40	6	38974	38902	Asn	GTT	0	0	78.23
PHYCAscaffold_40	7	38202	38130	Asn	GTT	0	0	78.23
PHYCAscaffold_40	8	37430	37358	Asn	GTT	0	0	78.23
PHYCAscaffold_40	9	36658	36586	Asn	GTT	0	0	78.23
PHYCAscaffold_40	10	35886	35814	Asn	GTT	0	0	78.23
PHYCAscaffold_40	11	34939	34867	Asn	GTT	0	0	78.23
PHYCAscaffold_40	12	34343	34271	Asn	GTT	0	0	78.23
PHYCAscaffold_40	13	33572	33500	Asn	GTT	0	0	78.23
PHYCAscaffold_40	14	7237	7165	Asn	GTT	0	0	78.23
PHYCAscaffold_40	15	5224	5152	Asn	GTT	0	0	78.23
PHYCAscaffold_41	1	170195	170268	Ile	TAT	0	0	76.65
PHYCAscaffold_41	2	163846	163773	Ile	TAT	0	0	76.65
PHYCAscaffold_44	1	111639	111710	Thr	TGT	0	0	47.40
PHYCAscaffold_44	2	114700	114772	Ala	AGC	0	0	62.90
PHYCAscaffold_44	3	115505	115577	Ala	AGC	0	0	62.90
PHYCAscaffold_44	4	116310	116382	Ala	AGC	0	0	62.90
PHYCAscaffold_44	5	117114	117186	Ala	AGC	0	0	62.90
PHYCAscaffold_44	6	117919	117991	Ala	AGC	0	0	62.90
PHYCAscaffold_44	7	118724	118796	Ala	AGC	0	0	62.90
PHYCAscaffold_44	8	119529	119601	Ala	AGC	0	0	62.90
PHYCAscaffold_44	9	120331	120403	Ala	AGC	0	0	62.90
PHYCAscaffold_44	10	121930	122002	Ala	AGC	0	0	62.90
PHYCAscaffold_44	11	122724	122796	Ala	AGC	0	0	62.90
PHYCAscaffold_44	12	123529	123601	Ala	AGC	0	0	62.90
PHYCAscaffold_44	13	125128	125200	Ala	AGC	0	0	62.90
PHYCAscaffold_44	14	285493	285574	Leu	CAG	0	0	64.44
PHYCAscaffold_44	15	286238	286319	Leu	CAG	0	0	64.44
PHYCAscaffold_44	16	286983	287064	Leu	CAG	0	0	64.44
PHYCAscaffold_44	17	287717	287798	Leu	CAG	0	0	64.44
PHYCAscaffold_44	18	288461	288542	Leu	CAG	0	0	58.11
PHYCAscaffold_44	19	289206	289287	Leu	CAG	0	0	64.44
PHYCAscaffold_44	20	290688	290769	Leu	CAG	0	0	64.44
PHYCAscaffold_44	21	291437	291518	Leu	CAG	0	0	64.44
PHYCAscaffold_44	22	292171	292252	Leu	CAG	0	0	64.44
PHYCAscaffold_44	23	292916	292997	Leu	CAG	0	0	64.44
PHYCAscaffold_44	24	293651	293732	Leu	CAG	0	0	64.44
PHYCAscaffold_44	25	294396	294477	Leu	CAG	0	0	64.44
PHYCAscaffold_44	26	295189	295270	Leu	CAG	0	0	64.44
PHYCAscaffold_44	27	295934	296015	Leu	CAG	0	0	64.44
PHYCAscaffold_44	28	296679	296760	Leu	CAG	0	0	58.11
PHYCAscaffold_44	29	297414	297495	Leu	CAG	0	0	64.44
PHYCAscaffold_44	30	208279	208208	Thr	TGT	0	0	47.40
PHYCAscaffold_48	1	523488	523416	Ala	CGC	0	0	66.08
PHYCAscaffold_48	2	522934	522862	Ala	CGC	0	0	66.08
PHYCAscaffold_48	3	522391	522319	Ala	CGC	0	0	66.08
PHYCAscaffold_48	4	521835	521763	Ala	CGC	0	0	66.08
PHYCAscaffold_48	5	498444	498372	Ala	CGC	0	0	66.08
PHYCAscaffold_48	6	497887	497815	Ala	CGC	0	0	66.08
PHYCAscaffold_48	7	497330	497257	Ala	CGC	0	0	56.57
PHYCAscaffold_48	8	496773	496701	Ala	CGC	0	0	66.08
PHYCAscaffold_48	9	491694	491622	Ala	CGC	0	0	66.08
PHYCAscaffold_48	10	491137	491065	Ala	CGC	0	0	66.08
PHYCAscaffold_48	11	490580	490508	Ala	CGC	0	0	66.08
PHYCAscaffold_48	12	490006	489934	Ala	CGC	0	0	66.08
PHYCAscaffold_48	13	489449	489377	Ala	CGC	0	0	66.08
PHYCAscaffold_48	14	488892	488820	Ala	AGC	0	0	54.40
PHYCAscaffold_48	15	488317	488245	Ala	CGC	0	0	66.08
PHYCAscaffold_48	16	487760	487688	Ala	CGC	0	0	66.08
PHYCAscaffold_48	17	487203	487131	Ala	CGC	0	0	66.08
PHYCAscaffold_48	18	486646	486574	Ala	CGC	0	0	66.08
PHYCAscaffold_48	19	486089	486017	Ala	CGC	0	0	66.08
PHYCAscaffold_49	1	77452	77372	Ser	TGA	0	0	78.34
PHYCAscaffold_59	1	26032	26099	Pseudo	TTT	0	0	23.12
PHYCAscaffold_60	1	233907	233836	Gly	CCC	0	0	64.44
PHYCAscaffold_60	2	233160	233089	Gly	TCC	0	0	71.14
PHYCAscaffold_60	3	232744	232673	Gly	CCC	0	0	50.47
PHYCAscaffold_60	4	230769	230698	Gly	CCC	0	0	64.44
PHYCAscaffold_60	5	229185	229114	Gly	TCC	0	0	71.14
PHYCAscaffold_60	6	228769	228698	Gly	CCC	0	0	69.19
PHYCAscaffold_60	7	227977	227906	Gly	TCC	0	0	71.14
PHYCAscaffold_60	8	227226	227155	Trp	CCA	0	0	64.65
PHYCAscaffold_60	9	226476	226405	Gly	TCC	0	0	71.14
PHYCAscaffold_60	10	211217	211146	Gly	TCC	0	0	71.14
PHYCAscaffold_60	11	210801	210742	Pseudo	CGA	0	0	27.39
PHYCAscaffold_61	1	303501	303573	Arg	CCT	0	0	70.63
PHYCAscaffold_63	1	320909	320838	Pro	TGG	0	0	69.66
PHYCAscaffold_63	2	320325	320254	Pro	TGG	0	0	69.66
PHYCAscaffold_63	3	319426	319355	Pro	TGG	0	0	69.66
PHYCAscaffold_63	4	318642	318571	Pro	TGG	0	0	69.66
PHYCAscaffold_63	5	317854	317783	Pro	TGG	0	0	69.66
PHYCAscaffold_63	6	317070	316999	Pro	TGG	0	0	69.66
PHYCAscaffold_63	7	316282	316211	Pro	TGG	0	0	69.66
PHYCAscaffold_63	8	315498	315427	Pro	TGG	0	0	69.66
PHYCAscaffold_63	9	314711	314640	Pro	TGG	0	0	69.66
PHYCAscaffold_63	10	313966	313895	Pro	TGG	0	0	69.66
PHYCAscaffold_63	11	313135	313064	Pro	TGG	0	0	69.66
PHYCAscaffold_63	12	312351	312280	Pro	TGG	0	0	69.66
PHYCAscaffold_63	13	311568	311497	Pro	TGG	0	0	69.66
PHYCAscaffold_63	14	310791	310720	Pro	TGG	0	0	64.11
PHYCAscaffold_63	15	310005	309934	Pro	TGG	0	0	69.66
PHYCAscaffold_63	16	309227	309156	Pro	TGG	0	0	69.66
PHYCAscaffold_63	17	308441	308370	Pro	TGG	0	0	69.66
PHYCAscaffold_63	18	307660	307590	Pro	TGG	0	0	67.23
PHYCAscaffold_67	1	89869	89797	Arg	CCG	0	0	62.15
PHYCAscaffold_68	1	21142	21213	Pro	TGG	0	0	69.66
PHYCAscaffold_70	1	280415	280349	Gly	GCC	0	0	46.78
PHYCAscaffold_76	1	42783	42852	Ile	GAT	0	0	41.89
PHYCAscaffold_77	1	4315	4243	Lys	CTT	0	0	84.25
PHYCAscaffold_77	2	3748	3676	Lys	CTT	0	0	84.25
PHYCAscaffold_77	3	3189	3117	Lys	CTT	0	0	84.25
PHYCAscaffold_78	1	3112	3032	Ser	CGA	0	0	75.73
PHYCAscaffold_78	2	2718	2638	Ser	CGA	0	0	75.73
PHYCAscaffold_78	3	2324	2244	Ser	CGA	0	0	75.73
PHYCAscaffold_78	4	1930	1850	Ser	CGA	0	0	75.73
PHYCAscaffold_78	5	747 	667 	Ser	CGA	0	0	75.73
PHYCAscaffold_78	6	353 	273 	Ser	CGA	0	0	75.73
PHYCAscaffold_80	1	164842	164773	Pseudo	???	0	0	32.63
PHYCAscaffold_84	1	41  	113 	Glu	TTC	0	0	72.75
PHYCAscaffold_84	2	460 	532 	Glu	TTC	0	0	72.75
PHYCAscaffold_84	3	909 	981 	Glu	TTC	0	0	72.75
PHYCAscaffold_84	4	1357	1429	Glu	TTC	0	0	72.75
PHYCAscaffold_84	5	6192	6264	Glu	TTC	0	0	72.75
PHYCAscaffold_84	6	6640	6712	Glu	TTC	0	0	69.41
PHYCAscaffold_84	7	7477	7549	Glu	TTC	0	0	72.75
PHYCAscaffold_84	8	7895	7967	Glu	TTC	0	0	72.75
PHYCAscaffold_84	9	12803	12875	Glu	TTC	0	0	72.75
PHYCAscaffold_84	10	13222	13294	Glu	TTC	0	0	72.75
PHYCAscaffold_84	11	13641	13713	Glu	TTC	0	0	61.48
PHYCAscaffold_84	12	14089	14161	Glu	TTC	0	0	69.41
PHYCAscaffold_89	1	157009	156940	Gly	ACC	0	0	50.54
PHYCAscaffold_94	1	150783	150711	Phe	GAA	0	0	81.12
PHYCAscaffold_94	2	149627	149553	Pseudo	GAA	0	0	44.04
PHYCAscaffold_94	3	148464	148394	Phe	GAA	0	0	39.39
PHYCAscaffold_94	4	146714	146642	Phe	GAA	0	0	81.12
PHYCAscaffold_102	1	232 	303 	Asp	GTC	0	0	77.10
PHYCAscaffold_102	2	797 	868 	Asp	GTC	0	0	65.26
PHYCAscaffold_102	3	1366	1437	Asp	GTC	0	0	77.10
PHYCAscaffold_102	4	1935	2006	Asp	GTC	0	0	77.10
PHYCAscaffold_102	5	2504	2575	Asp	GTC	0	0	77.10
PHYCAscaffold_102	6	4211	4282	Asp	GTC	0	0	77.10
PHYCAscaffold_102	7	5332	5403	Asp	GTC	0	0	77.10
PHYCAscaffold_102	8	5900	5971	Asp	GTC	0	0	77.10
PHYCAscaffold_102	9	6472	6543	Asp	GTC	0	0	77.10
PHYCAscaffold_119	1	2221	2293	Val	AAC	0	0	69.47
PHYCAscaffold_119	2	2652	2732	Ser	AGA	0	0	79.23
PHYCAscaffold_119	3	5743	5816	Val	AAC	0	0	49.48
PHYCAscaffold_119	4	6175	6255	Ser	AGA	0	0	79.23
PHYCAscaffold_119	5	7350	7430	Ser	AGA	0	0	79.23
PHYCAscaffold_128	1	79281	79196	Leu	TAA	0	0	62.21
PHYCAscaffold_128	2	78795	78710	Leu	TAA	0	0	63.39
PHYCAscaffold_128	3	64614	64529	Leu	TAA	0	0	63.39
PHYCAscaffold_128	4	64128	64043	Leu	TAA	0	0	63.39
PHYCAscaffold_128	5	63642	63557	Leu	TAA	0	0	62.21
PHYCAscaffold_128	6	58784	58699	Leu	TAA	0	0	63.39
PHYCAscaffold_128	7	58302	58218	Leu	TAA	0	0	54.24
PHYCAscaffold_132	1	17496	17575	Leu	TAG	0	0	68.00
PHYCAscaffold_137	1	1208	1279	Trp	CCA	0	0	69.87
PHYCAscaffold_137	2	32566	32637	Trp	CCA	0	0	69.87
PHYCAscaffold_137	3	36346	36417	Thr	CGT	0	0	76.20
PHYCAscaffold_137	4	33168	33088	Ser	GCT	0	0	75.61
PHYCAscaffold_137	5	1809	1729	Ser	GCT	0	0	75.61
PHYCAscaffold_137	6	830 	760 	Thr	CGT	0	0	72.19
PHYCAscaffold_158	1	209 	281 	Glu	TTC	0	0	72.75
PHYCAscaffold_158	2	632 	704 	Glu	TTC	0	0	72.75
PHYCAscaffold_185	1	30567	30639	Ala	AGC	0	0	62.90
PHYCAscaffold_185	2	30641	30712	His	GTG	0	0	62.47
PHYCAscaffold_185	3	31343	31414	Ala	AGC	0	0	67.33
PHYCAscaffold_185	4	31416	31487	His	GTG	0	0	62.47
PHYCAscaffold_185	5	32118	32190	Ala	AGC	0	0	62.90
PHYCAscaffold_185	6	32192	32262	His	GTG	0	0	22.25
PHYCAscaffold_185	7	32894	32966	Ala	AGC	0	0	62.90
PHYCAscaffold_185	8	32968	33039	His	GTG	0	0	62.47
PHYCAscaffold_185	9	33670	33742	Ala	AGC	0	0	62.90
PHYCAscaffold_185	10	33744	33815	His	GTG	0	0	62.47
PHYCAscaffold_185	11	34446	34518	Ala	AGC	0	0	62.90
PHYCAscaffold_185	12	34520	34591	His	GTG	0	0	62.47
PHYCAscaffold_185	13	35222	35294	Ala	AGC	0	0	62.90
PHYCAscaffold_185	14	35296	35367	His	GTG	0	0	62.47
PHYCAscaffold_185	15	35998	36070	Ala	AGC	0	0	62.90
PHYCAscaffold_185	16	36072	36143	His	GTG	0	0	62.47
PHYCAscaffold_185	17	36774	36846	Ala	AGC	0	0	62.90
PHYCAscaffold_185	18	36848	36919	His	GTG	0	0	62.47
PHYCAscaffold_185	19	37552	37624	Ala	AGC	0	0	62.90
PHYCAscaffold_185	20	37626	37697	His	GTG	0	0	62.47
PHYCAscaffold_185	21	38328	38400	Ala	AGC	0	0	62.90
PHYCAscaffold_185	22	38402	38473	His	GTG	0	0	62.47
PHYCAscaffold_185	23	39104	39176	Ala	AGC	0	0	62.90
PHYCAscaffold_185	24	39178	39249	His	GTG	0	0	62.47
PHYCAscaffold_185	25	39890	39962	Ala	AGC	0	0	62.90
PHYCAscaffold_185	26	39964	40035	His	GTG	0	0	62.47
PHYCAscaffold_203	1	68  	140 	Glu	CTC	0	0	72.95
PHYCAscaffold_203	2	667 	739 	Glu	CTC	0	0	72.95
PHYCAscaffold_203	3	1266	1338	Glu	CTC	0	0	66.63
PHYCAscaffold_203	4	1865	1939	Glu	CTC	0	0	57.41
PHYCAscaffold_203	5	2467	2539	Glu	CTC	0	0	65.40
PHYCAscaffold_203	6	4591	4663	Glu	CTC	0	0	72.95
PHYCAscaffold_203	7	5189	5261	Glu	CTC	0	0	72.95
PHYCAscaffold_203	8	5776	5848	Glu	CTC	0	0	72.95
PHYCAscaffold_216	1	3647	3573	Pseudo	GAA	0	0	44.04
PHYCAscaffold_284	1	372 	443 	Gln	TTG	0	0	73.74
PHYCAscaffold_284	2	552 	623 	Gln	CTG	0	0	73.31
PHYCAscaffold_284	3	1266	1337	Gln	TTG	0	0	73.74
PHYCAscaffold_343	1	2086	2158	Val	TAC	0	0	79.73
PHYCAscaffold_343	2	3581	3504	Leu	TAG	0	0	66.83
PHYCAscaffold_456	1	6601	6516	Leu	TAA	0	0	63.39
PHYCAscaffold_456	2	5137	5052	Leu	TAA	0	0	63.39
PHYCAscaffold_456	3	4652	4567	Leu	TAA	0	0	63.39
PHYCAscaffold_456	4	2823	2738	Leu	TAA	0	0	63.39
PHYCAscaffold_456	5	2337	2252	Leu	TAA	0	0	62.21
PHYCAscaffold_606	1	514 	585 	Cys	GCA	0	0	75.94
PHYCAscaffold_606	2	1157	1228	Cys	GCA	0	0	75.94
PHYCAscaffold_606	3	1737	1808	Cys	GCA	0	0	75.94
PHYCAscaffold_606	4	2317	2388	Cys	GCA	0	0	75.94
PHYCAscaffold_774	1	585 	688 	Tyr	GTA	622	652	74.34
PHYCAscaffold_774	2	2878	2981	Tyr	GTA	2915	2945	74.34
PHYCAscaffold_843	1	426 	498 	Arg	ACG	0	0	65.99
PHYCAscaffold_843	2	2743	2815	Arg	ACG	0	0	65.99
PHYCAscaffold_848	1	2   	82  	Ser	AGA	0	0	79.23
PHYCAscaffold_848	2	654 	726 	Val	AAC	0	0	49.57
PHYCAscaffold_848	3	1084	1164	Ser	CGA	0	0	79.84