T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=90
*
 BAD AVG GOOD
*
gi|81912790|sp|   :  90
PHYCAscaffold_1   :  90
cons              :  90

gi|81912790|sp|   MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPA
PHYCAscaffold_1   ---TLWMGDIQMHWDETFIASLFTTAVEQP-VIKLIRDKVTGYPA

cons                 :*****:: : **.**:  *:*  *    :*:**:::** **


gi|81912790|sp|   GYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQP
PHYCAscaffold_1   GYGFLEFPTQQGAQQVLEAYNGQLIRLANTMHRFRMNWGAGGRRI

cons              ** *:**.    *:: *.  **: :  *.. :**::*:.: *:: 


gi|81912790|sp|   DNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDP-TG
PHYCAscaffold_1   ETSDDHSIFVGDLAPDVTDELLLSTFNARFTSVRGAKVVIDPITR

cons              :.* ::*:*****:*** * :* . *   :.* **.***:** * 


gi|81912790|sp|   VSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASR
PHYCAscaffold_1   MSKGFGFVRFGSKEEADQALQTMNG-VYCSSRPMRVSVATERNK-

cons              :***:***:* .: * .:**   :* *  ..:*:*:***  : . 


gi|81912790|sp|   VKPVEYSQMYSYSYNQYYQQYQNYYAQWGYDQ-NTGSYSYS-YPQ
PHYCAscaffold_1   ---------------SRQQNYYNYSAAYGYPQYQQGAYGYAAYGQ

cons                             .  *:* ** * :** * : *:*.*: * *


gi|81912790|sp|   YGYTQSTMQTYEEVGDDALEDPAPQLDVTEANKEFMEQSEELYDA
PHYCAscaffold_1   YGQQGNQSQG-----------------------------------

cons              **   .  *                                    


gi|81912790|sp|   LMDCHWQPLDTVSSEIPAMM
PHYCAscaffold_1   ----------------GYQQ

cons