TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|81912790|sp|Q80VC6.2|TSAP1_MOUSE RecName: Full=tRNA selenocysteine 1-associated protein 1; AltName: Full=SECp43; AltName: Full=tRNA selenocysteine-associated protein 1 (287 letters) Database: L.tarentolae/genome.fa 7267 sequences; 31,598,840 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Lt_contig3266 | | 1 to 2384 74 1e-13 Lt_contig29 | | 1 to 16658 59 5e-09 Lt_contig3632 | | 1 to 2373 49 5e-06 Lt_contig5405 | | 1 to 2738 39 0.003 Lt_contig71 | | 1 to 2161 39 0.005 Lt_contig7166 | | 1 to 7282 37 0.012 Lt_contig1525 | | 1 to 6437 35 0.076 Lt_contig6547 | | 1 to 4064 35 0.076 Lt_contig6254 | | 1 to 24173 34 0.099 Lt_contig26 | | 1 to 1930 34 0.099 Lt_contig6865 | | 1 to 21365 31 0.84 Lt_contig4339 | | 1 to 2175 31 1.1 Lt_contig7015 | | 1 to 7626 30 1.4 Lt_contig374 | | 1 to 5376 30 1.4 Lt_contig1259 | | 1 to 3553 30 1.9 Lt_contig4037 | | 1 to 1121 30 1.9 Lt_contig4725 | | 1 to 9675 29 4.2 Lt_contig5963 | | 1 to 3402 28 7.1 Lt_contig5753 | | 1 to 6892 28 7.1 Lt_contig6114 | | 1 to 4517 28 9.3 >Lt_contig3266 | | 1 to 2384 Length = 2384 Score = 73.6 bits (179), Expect = 1e-13 Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 4/162 (2%) Frame = -1 Query: 3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62 AS+++GDL+ ++E + F + G T+++V++ R+ +T GY +V F + +AEK + Sbjct: 1349 ASIYVGDLDATINEPQLVELFKSFG-TILNVRVCRDIITQRSLGYGYVNFDNHESAEKAI 1173 Query: 63 HKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYS----LFVGDLTPDVDDGMLYEFFVK 118 +N K + K +L + +Q D + YS +FV +L DVD L++ F K Sbjct: 1172 ESMNFKRVGD----KCVRLMW----QQRDPALRYSGNGNVFVKNLEKDVDSKHLHDIFTK 1017 Query: 119 VYPSCRGGKVVLDPTGVSKGYGFVKFTDELEQKRALTECQGA 160 + + KV+ D G S+GYGFV F DE K A+ + GA Sbjct: 1016 -FGAILSCKVMEDEEGKSRGYGFVHFKDETSAKDAIVKMNGA 894 >Lt_contig29 | | 1 to 16658 Length = 16658 Score = 58.5 bits (140), Expect = 5e-09 Identities = 51/155 (32%), Positives = 74/155 (47%), Gaps = 4/155 (2%) Frame = -3 Query: 4 SLWMGDLEPYMD--ENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKC 61 S+++GDL + E IS F+T+ V+SVK+ R+ T GY +V F A AEK Sbjct: 2013 SVYVGDLPIDLPRPEEAISSLFSTVAP-VVSVKVCRDMATQRSLGYGYVNFQTTADAEKV 1837 Query: 62 LHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKV-- 119 + +N G P ++ ++ ++ S ++FV L ++ L F K Sbjct: 1836 IDALN---YTGIAPGRQIRVMFSIRDPLQRKSGLNNVFVKKLDTAINAKELQSAFTKCGR 1666 Query: 120 YPSCRGGKVVLDPTGVSKGYGFVKFTDELEQKRAL 154 SC KV LD G SKGYGFV+F K AL Sbjct: 1665 VLSC---KVALDSAGNSKGYGFVQFETAEGAKAAL 1570 Score = 34.3 bits (77), Expect = 0.099 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 1/86 (1%) Frame = -3 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDPTGVSKGYGFVKFTDELEQKRALTE 156 +L+V L D+ D L E F + + V+ +P G KG+ FV F D+ AL Sbjct: 1170 NLYVKHLPDDITDEKLREIF-EPFGKITSCAVMKEPNGSFKGFAFVCFEDKQHASTALRN 994 Query: 157 CQGA-VGLGCKPVRLSVAIPKASRVK 181 G + KP+ +S A K R++ Sbjct: 993 LNGQHLENSKKPLYVSHAEQKDMRIR 916 >Lt_contig3632 | | 1 to 2373 Length = 2373 Score = 48.5 bits (114), Expect = 5e-06 Identities = 27/78 (34%), Positives = 43/78 (55%) Frame = -2 Query: 94 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDPTGVSKGYGFVKFTDELEQKRA 153 P S++VG L PD+ + LY++FV++ P V T S GYG+V F D + ++A Sbjct: 1832 PNPSIWVGGLDPDLQEQKLYDYFVRIGPVISVRVCVDSATQKSLGYGYVNFQDPADAEKA 1653 Query: 154 LTECQGAVGLGCKPVRLS 171 L Q LG + +R++ Sbjct: 1652 LD--QAGTKLGSRYLRIA 1605 Score = 48.5 bits (114), Expect = 5e-06 Identities = 46/158 (29%), Positives = 67/158 (42%), Gaps = 2/158 (1%) Frame = -2 Query: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63 S+W+G L+P + E + F +G V+SV++ + T GY +V F D A AEK L Sbjct: 1823 SIWVGGLDPDLQEQKLYDYFVRIG-PVISVRVCVDSATQKSLGYGYVNFQDPADAEKALD 1647 Query: 64 KINGKPLPGATPAKRFKLNYATYGKQPD--NSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121 + G R+ L A + P S ++ V L VD L E F K + Sbjct: 1646 Q------AGTKLGSRY-LRIAKIQRDPSKRRSGVNNILVKKLPKSVDTYALKEMFSK-FG 1491 Query: 122 SCRGGKVVLDPTGVSKGYGFVKFTDELEQKRALTECQG 159 + D G S+GY + F E A+ E G Sbjct: 1490 RLTAIGLACDEKGESRGYARISFEREESAVDAVKEMDG 1377 >Lt_contig5405 | | 1 to 2738 Length = 2738 Score = 39.3 bits (90), Expect = 0.003 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Frame = +2 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDPT-GVSKGYGFVKFTDELEQKRALT 155 +LFV L ++ D L F PS K++LDPT G SKG+GFV F +E +A Sbjct: 656 NLFVAKLPRNISDADLLHIFGDFGPS--SAKIMLDPTTGKSKGFGFVLFEEEERGAKAYK 829 Query: 156 ECQGAVGLGC 165 + C Sbjct: 830 ALNRTMARAC 859 >Lt_contig71 | | 1 to 2161 Length = 2161 Score = 38.5 bits (88), Expect = 0.005 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Frame = -3 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALT 155 +L V L VDD FF + + V+ D TG S+G+GFV+FT ++ RAL Sbjct: 485 NLLVRFLDHAVDDTQFRVFF-EPFGEISSSMVMRDIFTGESRGFGFVRFTRSVDAARALR 309 Query: 156 ECQG 159 EC G Sbjct: 308 ECDG 297 >Lt_contig7166 | | 1 to 7282 Length = 7282 Score = 37.4 bits (85), Expect = 0.012 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Frame = -2 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDPT-GVSKGYGFVKFTDE 147 +LFV L ++ D L + FV+ P+ KV+LD T G SKG+GFV F E Sbjct: 2070 NLFVAKLPRNLTDADLEQIFVQYNPT--SAKVMLDATTGKSKGFGFVLFASE 1921 >Lt_contig1525 | | 1 to 6437 Length = 6437 Score = 34.7 bits (78), Expect = 0.076 Identities = 24/75 (32%), Positives = 38/75 (50%) Frame = -1 Query: 10 LEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKP 69 L P M+E + F G + SVKII +++TG GY FV++ +A + +N Sbjct: 5456 LPPLMNEAQVYELFGQFGR-IESVKIIYDKITGESRGYGFVKYQFFFSATYAVFYLNRFE 5280 Query: 70 LPGATPAKRFKLNYA 84 + G K+ K+ YA Sbjct: 5279 IGG----KKLKVAYA 5247 Score = 32.3 bits (72), Expect = 0.38 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Frame = -1 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDP-TGVSKGYGFVKF 144 +L V L P +++ +YE F + + K++ D TG S+GYGFVK+ Sbjct: 5474 NLIVNYLPPLMNEAQVYELFGQ-FGRIESVKIIYDKITGESRGYGFVKY 5331 >Lt_contig6547 | | 1 to 4064 Length = 4064 Score = 34.7 bits (78), Expect = 0.076 Identities = 19/69 (27%), Positives = 34/69 (49%) Frame = -2 Query: 2 AASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKC 61 + ++++G+L Y E + F+ G + + + N +T P G+CFV F A A Sbjct: 2542 STTVYVGNLSFYTAEEQVYNHFSPCGH-IRDIVMGLNEVTRCPCGFCFVVFESQAAAVLA 2366 Query: 62 LHKINGKPL 70 + +NG L Sbjct: 2365 VQVLNGSLL 2339 >Lt_contig6254 | | 1 to 24173 Length = 24173 Score = 34.3 bits (77), Expect = 0.099 Identities = 24/66 (36%), Positives = 32/66 (48%) Frame = -2 Query: 7 MGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKIN 66 M +L P E + R FA V+SV+I+R+ TG Y FVEF + A K + Sbjct: 22129 MANLHPETVEEDL-RHFADQFGRVLSVRIVRHHKTGKSCRYAFVEFNLVGEARKAVQFHR 21953 Query: 67 GKPLPG 72 K L G Sbjct: 21952 KKRLKG 21935 >Lt_contig26 | | 1 to 1930 Length = 1930 Score = 34.3 bits (77), Expect = 0.099 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Frame = +1 Query: 90 PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-PTGVSKGYGFVKFTDEL 148 P+ +L V + VD+ L + F + P K+V D T S+GYGFVK+ Sbjct: 427 PEPEALRNLMVNYIPTTVDEMQLRQLFERFGP-IESVKIVCDRETRQSRGYGFVKYHSAA 603 Query: 149 EQKRALTECQG 159 ++A+TE G Sbjct: 604 SAQQAVTELNG 636 Score = 33.9 bits (76), Expect = 0.13 Identities = 24/76 (31%), Positives = 40/76 (52%) Frame = +1 Query: 14 MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGA 73 +DE + + F G + SVKI+ +R T GY FV++ A+A++ + ++NG + Sbjct: 478 VDEMQLRQLFERFGP-IESVKIVCDRETRQSRGYGFVKYHSAASAQQAVTELNGFNILN- 651 Query: 74 TPAKRFKLNYATYGKQ 89 KR K+ A G Q Sbjct: 652 ---KRLKVALAASGNQ 690 >Lt_contig6865 | | 1 to 21365 Length = 21365 Score = 31.2 bits (69), Expect = 0.84 Identities = 19/49 (38%), Positives = 28/49 (57%) Frame = +1 Query: 133 TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASRVK 181 TG+ KGYGFV F +E + A+ QG + V++ +A P+AS K Sbjct: 14332 TGLCKGYGFVLFENEQDALNAVIALQGHCIRNTR-VQVRLARPEASAKK 14475 >Lt_contig4339 | | 1 to 2175 Length = 2175 Score = 30.8 bits (68), Expect = 1.1 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Frame = +3 Query: 98 LFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDPTGVSKGYGFVKFTDELEQKRALTEC 157 LFVG + + L F + + + K++ +P G SKG +V++ E +RA+T Sbjct: 969 LFVGQVPAVCTEDQLRPLFAQ-FGTLLEIKIMREPNGRSKGSAWVRYELEESAQRAITAL 1145 Query: 158 --QGAVGLGCKPVRLSVAIPKASRV 180 + V P+R+ A P +R+ Sbjct: 1146 NEKHIVPPQTNPLRVQFAAPSTNRM 1220 >Lt_contig7015 | | 1 to 7626 Length = 7626 Score = 30.4 bits (67), Expect = 1.4 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 3/73 (4%) Frame = -2 Query: 90 PDNSPEY--SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-PTGVSKGYGFVKFTD 146 P + Y L V L DV L+ F + P G +++ D T + +GYGFV F Sbjct: 1199 PSSDERYRKQLIVNYLAQDVTSADLHTLFARFGP-LDGARIIFDRQTSMPRGYGFVYFRY 1023 Query: 147 ELEQKRALTECQG 159 K+A+ G Sbjct: 1022 PDSAKQAVDTMNG 984 >Lt_contig374 | | 1 to 5376 Length = 5376 Score = 30.4 bits (67), Expect = 1.4 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +1 Query: 120 YPSCRGGKVVLDPTGVSKGYGFVKFTD 146 Y R K++ D GVS+GYGF++F + Sbjct: 4285 YGPIRNVKLLKDTAGVSRGYGFIEFVN 4365 >Lt_contig1259 | | 1 to 3553 Length = 3553 Score = 30.0 bits (66), Expect = 1.9 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Frame = +2 Query: 89 QPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-PTGVSKGYGFVKFTDE 147 +P +S + ++FV L P D L+ F + KV+L+ TGVSK GFV+F + Sbjct: 1172 EPGHS-DRNIFVSKLPPTFKDSDLHGMFQN-FGHVISAKVMLNVKTGVSKETGFVQFMNH 1345 Query: 148 LEQKRA 153 + RA Sbjct: 1346 KDALRA 1363 >Lt_contig4037 | | 1 to 1121 Length = 1121 Score = 30.0 bits (66), Expect = 1.9 Identities = 19/57 (33%), Positives = 31/57 (54%) Frame = -3 Query: 33 VKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQ 89 VKI+ +R T GY FV++ A+A++ + ++NG + KR K+ A G Q Sbjct: 1119 VKIVCDRETRQSRGYGFVKYHSAASAQQAVTELNGFNILN----KRLKVALAASGNQ 961 Score = 29.6 bits (65), Expect = 2.4 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = -3 Query: 127 KVVLD-PTGVSKGYGFVKFTDELEQKRALTECQG 159 K+V D T S+GYGFVK+ ++A+TE G Sbjct: 1116 KIVCDRETRQSRGYGFVKYHSAASAQQAVTELNG 1015 >Lt_contig4725 | | 1 to 9675 Length = 9675 Score = 28.9 bits (63), Expect = 4.2 Identities = 16/41 (39%), Positives = 26/41 (63%) Frame = -3 Query: 133 TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVA 173 T +KG FV+F+ + RAL C+GA+ +G + +R+S A Sbjct: 7636 TRQNKGAAFVRFSSAEDAVRALQLCRGAILMG-RLLRVSAA 7517 >Lt_contig5963 | | 1 to 3402 Length = 3402 Score = 28.1 bits (61), Expect = 7.1 Identities = 16/79 (20%), Positives = 32/79 (40%) Frame = -1 Query: 5 LWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 64 LW+G+L PY+ ++ F G ++ R+ + F+ + + + Sbjct: 1593 LWVGNLVPYITNEKLTEVFEVFGPISSVSRLGRSNM-------AFLHYETVEQCTMAIET 1435 Query: 65 INGKPLPGATPAKRFKLNY 83 + G+P+ G LNY Sbjct: 1434 MKGRPIEGV----MLSLNY 1390 >Lt_contig5753 | | 1 to 6892 Length = 6892 Score = 28.1 bits (61), Expect = 7.1 Identities = 13/45 (28%), Positives = 24/45 (53%) Frame = +2 Query: 30 VMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 74 ++S + + T GY FV FAD A C+ ++ + +PG++ Sbjct: 3776 IVSAAVAHHPETNESRGYGFVLFADERDAASCVRTLHQQRVPGSS 3910 >Lt_contig6114 | | 1 to 4517 Length = 4517 Score = 27.7 bits (60), Expect = 9.3 Identities = 22/70 (31%), Positives = 29/70 (41%) Frame = -3 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDPTGVSKGYGFVKFTDELEQKRALTE 156 +L+V L D L+E F + P + T KGYGFV F + A +E Sbjct: 2349 NLYVASLPEWFTDADLHELFTRFGPIVSAKVMCHKGTHQCKGYGFVLFQRTEDAAVARSE 2170 Query: 157 CQGAVGLGCK 166 G V G K Sbjct: 2169 MIGHVVGGNK 2140 Database: L.tarentolae/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 31,598,840 Number of sequences in database: 7267 Lambda K H 0.317 0.135 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,417,310 Number of Sequences: 7267 Number of extensions: 120337 Number of successful extensions: 550 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 403 Number of HSP's successfully gapped in prelim test: 17 Number of HSP's that attempted gapping in prelim test: 132 Number of HSP's gapped (non-prelim): 436 length of query: 287 length of database: 10,532,946 effective HSP length: 99 effective length of query: 188 effective length of database: 9,813,513 effective search space: 1844940444 effective search space used: 1844940444 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 60 (27.7 bits)