TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|81912790|sp|Q80VC6.2|TSAP1_MOUSE RecName: Full=tRNA
selenocysteine 1-associated protein 1; AltName: Full=SECp43; AltName:
Full=tRNA selenocysteine-associated protein 1
         (287 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330848154|gb|ADNL01002449.1| Astrammina rara contig02914, who...    24   3.8  
gi|330848274|gb|ADNL01002329.1| Astrammina rara contig02779, who...    24   3.8  
gi|330848605|gb|ADNL01001998.1| Astrammina rara contig02380, who...    24   3.8  
gi|330848375|gb|ADNL01002228.1| Astrammina rara contig02661, who...    23   5.0  
gi|330847792|gb|ADNL01002811.1| Astrammina rara contig03302, who...    23   8.6  

>gi|330848154|gb|ADNL01002449.1| Astrammina rara contig02914, whole
           genome shotgun sequence
          Length = 13323

 Score = 23.9 bits (50), Expect = 3.8
 Identities = 29/141 (20%), Positives = 49/141 (34%), Gaps = 3/141 (2%)
 Frame = -2

Query: 16  ENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK-INGKPLPGAT 74
           EN + R F  +GE    +          P    F++     T        I+G   PG  
Sbjct: 974 ENLVRRCFICVGEASTDLSA--------PLQATFIQEGKFRTGGVSTGSGISGITSPGGD 819

Query: 75  PAKRFKLNYATYGKQPDNS--PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDP 132
             +    +  T+G   + +  P+    +GD+  D+D  +  E +V        G  ++D 
Sbjct: 818 DTQIQYNDNGTFGGNANLTWVPDTLTVIGDIDVDLDAFIGAELYVGTLLDVGDGDFMVDV 639

Query: 133 TGVSKGYGFVKFTDELEQKRA 153
            GV        F  +L    A
Sbjct: 638 DGVLTSLAGATFGGDLSVSHA 576


>gi|330848274|gb|ADNL01002329.1| Astrammina rara contig02779, whole
           genome shotgun sequence
          Length = 581

 Score = 23.9 bits (50), Expect = 3.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 69  PLPGATPAKRFKLNYATY 86
           PL   TP  +FK+N+A Y
Sbjct: 399 PLT*TTPLSKFKVNFALY 452


>gi|330848605|gb|ADNL01001998.1| Astrammina rara contig02380, whole
           genome shotgun sequence
          Length = 653

 Score = 23.9 bits (50), Expect = 3.8
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = -3

Query: 147 ELEQKRALTECQGAVGLGC----KPVRLSVAIPKASRVKP 182
           +L    A+TE    V +G      P+R  VA+P A R +P
Sbjct: 258 KLATAEAVTESTPVVSVGVTQVPSPLRNVVALPNAGRAQP 139


>gi|330848375|gb|ADNL01002228.1| Astrammina rara contig02661, whole
           genome shotgun sequence
          Length = 1032

 Score = 23.5 bits (49), Expect = 5.0
 Identities = 14/47 (29%), Positives = 17/47 (36%)
 Frame = +1

Query: 121 PSCRGGKVVLDPTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKP 167
           P C  G+   +P    KGYG  + T    Q R    C       C P
Sbjct: 529 PECDRGRNPREP--YHKGYGSTR*THRFGQYRHT*RCSSQAEKSCTP 663


>gi|330847792|gb|ADNL01002811.1| Astrammina rara contig03302, whole
           genome shotgun sequence
          Length = 1296

 Score = 22.7 bits (47), Expect = 8.6
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 155 TECQGAVGLGCKPVRLSV 172
           T  +G VG  CK VRLSV
Sbjct: 263 TRPRGFVGRPCKAVRLSV 316


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.317    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 372,228
Number of Sequences: 3231
Number of extensions: 3876
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of query: 287
length of database: 483,365
effective HSP length: 73
effective length of query: 214
effective length of database: 247,502
effective search space: 52965428
effective search space used: 52965428
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)