TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|8923460|ref|NP_060316.1| tRNA selenocysteine 1-associated protein 1 [Homo sapiens] (287 letters) Database: T.congolense/genome.fa 11 sequences; 22,287,946 total letters Searching...........done Score E Sequences producing significant alignments: (bits) Value T.congo.pschr.9 63 2e-10 T.congo.pschr.11 42 5e-04 T.congo.pschr.8 32 0.49 T.congo.pschr.7 30 1.1 T.congo.pschr.3. 29 3.2 T.congo.pschr.5 28 4.2 T.congo.pschr.6 28 5.4 >T.congo.pschr.9 Length = 2092392 Score = 63.2 bits (152), Expect = 2e-10 Identities = 49/161 (30%), Positives = 84/161 (52%), Gaps = 4/161 (2%) Frame = -1 Query: 3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62 ASL++GDL+P + E + F G T+++V++ R+ +T GY +V + + +A K + Sbjct: 1119384 ASLYVGDLDPAISEPQLVEIFRPYG-TILNVRVCRDIITQRSLGYGYVNYDNANSATKAM 1119208 Query: 63 HKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYS----LFVGDLTPDVDDGMLYEFFVK 118 ++N K + K ++ + +Q D + YS +FV +L +VD L F K Sbjct: 1119207 EEMNFKRVG----EKCIRIMW----QQRDPALRYSGNGNVFVKNLKGEVDSRELSLIFKK 1119052 Query: 119 VYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQG 159 + KV+ D++G S+GYGFV F D+ K A+ G Sbjct: 1119051 -FGEILSCKVMDDESGNSRGYGFVHFKDDNAAKSAIESMNG 1118932 Score = 47.4 bits (111), Expect = 9e-06 Identities = 30/82 (36%), Positives = 47/82 (57%) Frame = -3 Query: 90 PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELE 149 P SP S++VG L P++++ LY+ FV+V P V T S GYG+V F + + Sbjct: 1351717 PTASP--SIWVGGLDPNLNEQKLYDHFVRVGPVASVRVCVDTVTQKSLGYGYVNFQNPAD 1351544 Query: 150 QKRALTECQGAVGLGSKPVRLS 171 ++AL Q V LG+K +R++ Sbjct: 1351543 AEKALD--QAGVKLGTKHIRIA 1351484 Score = 47.4 bits (111), Expect = 9e-06 Identities = 41/156 (26%), Positives = 66/156 (42%) Frame = -3 Query: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63 S+W+G L+P ++E + F +G V SV++ + +T GY +V F + A AEK L Sbjct: 1351702 SIWVGGLDPNLNEQKLYDHFVRVG-PVASVRVCVDTVTQKSLGYGYVNFQNPADAEKALD 1351526 Query: 64 KINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSC 123 + K K ++ S ++ V L VD L E F K + Sbjct: 1351525 QAGVK-----LGTKHIRIAKIQRDPSKRRSGVTNIVVKKLPSTVDTYALKEMFSK-FGRL 1351364 Query: 124 RGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQG 159 + D+ G S+GY + + E A+ E G Sbjct: 1351363 TAIGLATDEKGESRGYARISYEKEESAVEAVRELNG 1351256 Score = 45.4 bits (106), Expect = 3e-05 Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 10/180 (5%) Frame = -1 Query: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFAD---LATAEK 60 ++++ + P +D+ I + F+ G + S I +++ G +C E D A E Sbjct: 1118835 NVYIKQILPTVDKAIIEKFFSKFGG-ITSAAICKDK-NGRAFAFCNFEKHDDAVKAIEEF 1118662 Query: 61 CLHKINGKPLPG-------ATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLY 113 H++ G PG A P +L S +L+V + P+ + L Sbjct: 1118661 HDHEVEGVTQPGEKLYVQRAQPRSE-RLIALRQKYMQCQSLGNNLYVRNFDPEFTEKDLN 1118485 Query: 114 EFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 173 E F K Y R +V+ D GVS+G+GFV F + + AL E G + L KP+ +++A Sbjct: 1118484 ELF-KEYGVIRSCRVMTDANGVSRGFGFVSFENADQANAALREMSGRM-LNGKPLVVNIA 1118311 Score = 34.3 bits (77), Expect = 0.076 Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 2/64 (3%) Frame = -2 Query: 93 SPEYSLFVGDLTPDVDDGMLYEFFV-KVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQ 150 +PE S+F+G++ D ++ + FFV + + ++V D+ TG KG+G+V+F + Sbjct: 1755851 APETSVFIGNIAYDTNEEAVRNFFVERGILDVKRIRLVRDRSTGDCKGFGYVEFESKSSV 1755672 Query: 151 KRAL 154 RA+ Sbjct: 1755671 PRAI 1755660 Score = 28.1 bits (61), Expect = 5.4 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Frame = +2 Query: 72 GATPAKRFKLN-YATYGKQPDNSPEYSLFVGDLTPDVDD 109 G+ KRF L Y +GK+PDN+ + LF G+ P DD Sbjct: 1606334 GSLAIKRFPLAWYVLWGKKPDNTVKQMLF-GEGAPFHDD 1606447 >T.congo.pschr.11 Length = 4797796 Score = 41.6 bits (96), Expect = 5e-04 Identities = 27/75 (36%), Positives = 41/75 (54%) Frame = -1 Query: 10 LEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKP 69 L P MDE + + FA G + SVKII +++T GY FV++ +A +H +NG Sbjct: 105955 LPPMMDETQLFQLFAQFGP-IESVKIIYDKVTRESRGYGFVKYTFFFSATYAVHWLNGYH 105779 Query: 70 LPGATPAKRFKLNYA 84 + G KR K+ +A Sbjct: 105778 IAG----KRLKVAFA 105746 Score = 37.0 bits (84), Expect = 0.012 Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 1/93 (1%) Frame = -1 Query: 91 DNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELE 149 D P +L V L P +D+ L++ F + P K++ D+ T S+GYGFVK+T Sbjct: 105991 DAEPLRNLIVNYLPPMMDETQLFQLFAQFGP-IESVKIIYDKVTRESRGYGFVKYTFFFS 105815 Query: 150 QKRALTECQGAVGLGSKPVRLSVAIPKASRVKP 182 A+ G G RL VA A P Sbjct: 105814 ATYAVHWLNGYHIAGK---RLKVAFANAEAAYP 105725 Score = 35.8 bits (81), Expect = 0.026 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 1/79 (1%) Frame = -3 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALT 155 +L V + VD+ L + F + P K+V D +T S+GYGFVKF ++A+ Sbjct: 88367 NLMVNYIPTTVDEVQLRQLFERFGP-IESVKIVCDRETRQSRGYGFVKFQSAASAQQAIA 88191 Query: 156 ECQGAVGLGSKPVRLSVAI 174 G V L RL VA+ Sbjct: 88190 SLNGFVILNK---RLKVAL 88143 Score = 34.7 bits (78), Expect = 0.058 Identities = 25/76 (32%), Positives = 39/76 (51%) Frame = -3 Query: 14 MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGA 73 +DE + + F G + SVKI+ +R T GY FV+F A+A++ + +NG + Sbjct: 88337 VDEVQLRQLFERFGP-IESVKIVCDRETRQSRGYGFVKFQSAASAQQAIASLNGFVILN- 88164 Query: 74 TPAKRFKLNYATYGKQ 89 KR K+ A G Q Sbjct: 88163 ---KRLKVALAASGHQ 88125 Score = 30.8 bits (68), Expect = 0.84 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%) Frame = -1 Query: 120 YPSCRGGKVVLDQTGVSKGYGFVKFTDE---LEQKRALTECQGAVGLGSKPVRLSVAIPK 176 Y + K+V D G SKGY F++F + L RA+ +G G++ + +S AI Sbjct: 4475290 YGPIKNVKIVKDSAGTSKGYAFIEFANHPVALHALRAINNNPTILG-GNRRLLVSFAIED 4475114 Query: 177 ASRVKPVE 184 + ++ ++ Sbjct: 4475113 INALQKLQ 4475090 Score = 30.8 bits (68), Expect = 0.84 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Frame = +3 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTG-VSKGYGFVKFTDELEQKRALT 155 +++V L DD L+ F Y +++ + S+GYGFV + D + A++ Sbjct: 3397971 NVYVASLPLHFDDDQLFALF-SPYGRITSARIMRSKGARQSRGYGFVLYKDPSSAELAIS 3398147 Query: 156 ECQGAVGLGSKPVRLSVAIPKAS 178 G V GS+ +++ +A P AS Sbjct: 3398148 SLLGCVIDGSR-IQVRMAHPGAS 3398213 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = -1 Query: 30 VMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKP 69 + +VKI+++ G GY F+EFA+ A L IN P Sbjct: 4475281 IKNVKIVKDS-AGTSKGYAFIEFANHPVALHALRAINNNP 4475165 Score = 29.6 bits (65), Expect = 1.9 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%) Frame = +2 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALT 155 ++++ L PD D L F Y +V D Q+G KGYGFV + A+ Sbjct: 3391421 NVYIASLPPDYTDEELRSLF-SPYGKIVSTALVRDKQSGRCKGYGFVLMERYQDAYNAVM 3391597 Query: 156 ECQGAVGLGSKPVRLSVAIPKAS 178 QG + + V++ +A P+AS Sbjct: 3391598 ALQGHT-VSNVRVQVRLARPEAS 3391663 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/39 (35%), Positives = 24/39 (61%) Frame = +3 Query: 145 TDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRVKPV 183 TDE+ +++ + G +G K RLS+A P+A+ V+ V Sbjct: 2087190 TDEVSKRKMPAQRCGRMGPSRKSQRLSIATPRAAEVQLV 2087306 Score = 27.3 bits (59), Expect = 9.3 Identities = 15/52 (28%), Positives = 22/52 (42%) Frame = +3 Query: 27 GETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 78 GET S + + G C++ F + A H+ G P P +TP R Sbjct: 2289942 GETEASEQCVEKDKVGRKERNCWISFPSPSLALSTCHQT*GLPQPKSTPPHR 2290097 >T.congo.pschr.8 Length = 2451971 Score = 31.6 bits (70), Expect = 0.49 Identities = 18/42 (42%), Positives = 27/42 (64%) Frame = -1 Query: 133 TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAI 174 T SKG FVKF + RAL+ C+GA+ +G + +R+S A+ Sbjct: 1141064 TRQSKGAAFVKFVRGDDAVRALSLCRGAIFMG-RLLRVSAAV 1140942 Score = 27.3 bits (59), Expect = 9.3 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%) Frame = -3 Query: 86 YGKQPDNSP--EYSLFVGDL-TPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSK 137 +G+ P E LFV PDVD +L + C G +VL G+ K Sbjct: 271113 FGRHHSGRPFIEVPLFVARRPVPDVDASLLPNVIPTIVKQCTGSVIVLGSQGIGK 270949 >T.congo.pschr.7 Length = 2148087 Score = 30.4 bits (67), Expect = 1.1 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%) Frame = -1 Query: 90 PDNSPEYS-----LFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKF 144 P++ P+ S LFVG L + D+ LY+ F Y + ++ D SKG FV + Sbjct: 25929 PESIPQASPTAAKLFVGQLPFETDEKRLYDLF-SAYGTVEHIHILRDSQNRSKGAAFVTY 25753 Query: 145 TDELEQKRAL 154 + E A+ Sbjct: 25752 SSVEEADAAI 25723 >T.congo.pschr.3. Length = 1451265 Score = 28.9 bits (63), Expect = 3.2 Identities = 21/70 (30%), Positives = 36/70 (51%) Frame = +3 Query: 3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62 A +++G+L + E + F++ G+ + S KII +R T +P G + FA A A Sbjct: 889359 AEVFVGNLGEDVTEGQLRAHFSSCGK-INSCKIIVDRNTMLPTGIATIVFALPAYAAYAK 889535 Query: 63 HKINGKPLPG 72 ++G L G Sbjct: 889536 EHMHGSRLRG 889565 >T.congo.pschr.5 Length = 1517473 Score = 28.5 bits (62), Expect = 4.2 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Frame = +1 Query: 98 LFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTE 156 LFV L P + G E + + +V+ + +TG S YGFV+F+DE + RA + Sbjct: 1154098 LFVCKLNP-ITTGEGLEMCFSQFGKVKSAQVIKNPKTGDSLCYGFVEFSDEEDCYRAYQK 1154274 Query: 157 CQGAV 161 A+ Sbjct: 1154275 MDNAL 1154289 Score = 28.5 bits (62), Expect = 4.2 Identities = 18/62 (29%), Positives = 30/62 (48%) Frame = +1 Query: 5 LWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 64 L++ L P + F+ G+ V S ++I+N TG Y FVEF+D + K Sbjct: 1154098 LFVCKLNPITTGEGLEMCFSQFGK-VKSAQVIKNPKTGDSLCYGFVEFSDEEDCYRAYQK 1154274 Query: 65 IN 66 ++ Sbjct: 1154275 MD 1154280 >T.congo.pschr.6 Length = 1233507 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 7/43 (16%) Frame = +2 Query: 74 TPAKRFKLNYATYGKQPDN-------SPEYSLFVGDLTPDVDD 109 TP+ RF AT+GK P + SP + TPDV D Sbjct: 125684 TPSSRFTSGRATWGKSPKHMDGSPLPSPSFQFLSRCSTPDVRD 125812 Score = 27.3 bits (59), Expect = 9.3 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Frame = -1 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDE 147 +LF L ++D L F + KV+LD +G SKG+GFV F E Sbjct: 845826 NLFGTKLPRGINDSGLLSIFTGI--KAISAKVMLDPCSGSSKGFGFVLFDTE 845677 Score = 27.3 bits (59), Expect = 9.3 Identities = 17/66 (25%), Positives = 32/66 (48%) Frame = -1 Query: 2 AASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKC 61 + ++++G+L Y E I F+ G V V + + +T P G+CF+ F A Sbjct: 436425 STTVYVGNLSFYTTEEQIWEYFSGCGH-VRDVVMGLSDVTRTPCGFCFIVFEGQDGAMSA 436249 Query: 62 LHKING 67 + ++G Sbjct: 436248 VSDLHG 436231 Database: T.congolense/genome.fa Posted date: Nov 21, 2011 7:47 PM Number of letters in database: 22,287,946 Number of sequences in database: 11 Lambda K H 0.317 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,071,505 Number of Sequences: 11 Number of extensions: 75883 Number of successful extensions: 317 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 212 Number of HSP's gapped (non-prelim): 195 length of query: 287 length of database: 7,429,315 effective HSP length: 97 effective length of query: 190 effective length of database: 7,428,248 effective search space: 1411367120 effective search space used: 1411367120 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 59 (27.3 bits)