TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|8923460|ref|NP_060316.1| tRNA selenocysteine 1-associated protein 1 [Homo sapiens] (287 letters) Database: S.arctica/genome.fa 15,618 sequences; 121,588,341 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value supercont1.7943 of Sphaeroforma arctica JP610 54 3e-07 supercont1.1106 of Sphaeroforma arctica JP610 52 1e-06 supercont1.394 of Sphaeroforma arctica JP610 52 2e-06 supercont1.682 of Sphaeroforma arctica JP610 41 0.004 supercont1.827 of Sphaeroforma arctica JP610 40 0.005 supercont1.1957 of Sphaeroforma arctica JP610 38 0.026 supercont1.505 of Sphaeroforma arctica JP610 34 0.37 supercont1.419 of Sphaeroforma arctica JP610 33 1.1 supercont1.28 of Sphaeroforma arctica JP610 31 3.2 >supercont1.7943 of Sphaeroforma arctica JP610 Length = 1326 Score = 54.3 bits (129), Expect = 3e-07 Identities = 28/60 (46%), Positives = 40/60 (66%) Frame = -1 Query: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63 +LW G+L+PYM + FIS+AF G +VK+I NR TG+PAGY +V + L A+ +H Sbjct: 411 NLWCGELKPYMTDIFISQAFNQAGFYPHTVKMINNRNTGMPAGYWYV-YPCLLFAQTSIH 235 >supercont1.1106 of Sphaeroforma arctica JP610 Length = 22497 Score = 52.4 bits (124), Expect = 1e-06 Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 1/178 (0%) Frame = +2 Query: 5 LWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 64 L++G + M E + F GE V V I++++ +G P G FV + A A K + Sbjct: 16352 LFIGQIPRDMAETDVKAVFDEFGE-VFEVVILKDKFSGQPQGCGFVSYMHKADATKAIAG 16528 Query: 65 INGKP-LPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSC 123 ++ K LPG+ A + K+ + K D LFVG D+ M+ + F Y Sbjct: 16529 LHDKKVLPGSANAMQVKVADSEKRKDQDKK----LFVGMTGRLADESMIKKMF-DPYGVV 16693 Query: 124 RGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRVK 181 ++ G SKG GFV F + + A+ G+ L L V + K Sbjct: 16694 EEVTILKHPDGNSKGCGFVMFATREQGQSAINALNGSTTLDGATAPLVVKFADTDKDK 16867 Score = 30.8 bits (68), Expect = 4.1 Identities = 18/65 (27%), Positives = 35/65 (53%) Frame = +2 Query: 3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62 A+L++ + +N + FA G TV+S K+ ++ TG+ + FV + + A+A + Sbjct: 17315 ANLFVYHVPNEWTDNDLYANFAPFG-TVLSAKVFIDKNTGLSKCFGFVSYDNAASASAAI 17491 Query: 63 HKING 67 +NG Sbjct: 17492 QSMNG 17506 >supercont1.394 of Sphaeroforma arctica JP610 Length = 78326 Score = 52.0 bits (123), Expect = 2e-06 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 18/99 (18%) Frame = +2 Query: 49 FVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYAT------------------YGKQP 90 FVEF A+ +NG+ + + P+ ++L +A G Sbjct: 18371 FVEFYSNQEADAARQALNGQIVNPSDPSNHWRLGWAQRKDNEGPRSNMGGGGMEGVGGHG 18550 Query: 91 DNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVV 129 D EYS+FVG+LT +V DG L +F YP+C+ KVV Sbjct: 18551 DRHDEYSIFVGELTDEVTDGTLLAYFRMSYPNCKTAKVV 18667 Score = 50.4 bits (119), Expect = 5e-06 Identities = 26/50 (52%), Positives = 31/50 (62%) Frame = +1 Query: 130 LDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 179 L G SKGYGFV+F D+ EQ A+T GAVG G K +R+ A PK R Sbjct: 19072 LGNDGRSKGYGFVRFYDKAEQLDAITRMHGAVGCGGKILRVREATPKNPR 19221 >supercont1.682 of Sphaeroforma arctica JP610 Length = 50290 Score = 40.8 bits (94), Expect = 0.004 Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 4/121 (3%) Frame = +1 Query: 30 VMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATP-AKRFKLNYATYGK 88 ++S K++ + G+ FV F A+ + K+NG L G FK G+ Sbjct: 38356 ILSCKVVEDEQNN-SRGFGFVHFETEEAAQLAIEKVNGMMLLGKQVYVGIFKPKKERDGE 38532 Query: 89 QPDNSPEYS-LFVGDLTPDVDDGMLYEFFVKVYP--SCRGGKVVLDQTGVSKGYGFVKFT 145 + D ++ +FV +L D D L F K P SC + D G SKG+GF+ F Sbjct: 38533 KGDKQQTFNNVFVKNLADDAGDDELKAEFEKYGPITSC---VIARDDEGKSKGFGFICFE 38703 Query: 146 D 146 + Sbjct: 38704 E 38706 Score = 36.2 bits (82), Expect = 0.098 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 2/92 (2%) Frame = +3 Query: 66 NGKPLPGAT-PAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCR 124 +G P P A+ P + + + NS SL+VGDL PDV + L+E F V P Sbjct: 36567 SGSPTPAASVPGAQLASDQSAAA----NSTNTSLYVGDLHPDVTEAHLFEVFNAVGP-VA 36731 Query: 125 GGKVVLDQ-TGVSKGYGFVKFTDELEQKRALT 155 +V D T S GY ++ F + ++ LT Sbjct: 36732 SIRVCRDTITRRSLGYAYINFHNAVDGMFRLT 36827 Score = 32.7 bits (73), Expect = 1.1 Identities = 20/53 (37%), Positives = 29/53 (54%) Frame = +1 Query: 127 KVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 179 KVV D+ S+G+GFV F E + A+ + G + LG K V + + PK R Sbjct: 38368 KVVEDEQNNSRGFGFVHFETEEAAQLAIEKVNGMMLLG-KQVYVGIFKPKKER 38523 >supercont1.827 of Sphaeroforma arctica JP610 Length = 39707 Score = 40.4 bits (93), Expect = 0.005 Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 12/177 (6%) Frame = +2 Query: 15 DENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 74 D + + FA G +V + G AG FV F + A K + +N K + Sbjct: 3311 DSDKLREVFADFGTVTSAVANVNT--DGTSAGSGFVCFDNYEAAAKSVEAMNEKVIEEKA 3484 Query: 75 ---------PAKRFKLNYATYGKQPDNSPEY---SLFVGDLTPDVDDGMLYEFFVKVYPS 122 + +L + + + +Y +L+V +L + + + F + + Sbjct: 3485 LYCGRAQKKSEREAELRAKFDALKLERAQKYHGVNLYVKNLDDTLSEERVRTEFAP-FGT 3661 Query: 123 CRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 179 K++ D GVSKG+GFV F E +A+TE G + L SKP+ +++A K R Sbjct: 3662 ITSLKIMHDDKGVSKGFGFVCFETAEEATKAVTEMNGRM-LLSKPLYVALAQRKEDR 3829 Score = 39.7 bits (91), Expect = 0.009 Identities = 23/58 (39%), Positives = 34/58 (58%) Frame = +2 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRAL 154 SL+VGDL P+V++ +L+E F V P + T S GY +V F + L+ +RAL Sbjct: 2735 SLYVGDLHPEVNEALLFEIFNAVGPVASIRVCRDNITRRSLGYAYVNFHNFLDAERAL 2908 >supercont1.1957 of Sphaeroforma arctica JP610 Length = 9834 Score = 38.1 bits (87), Expect = 0.026 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 1/87 (1%) Frame = -1 Query: 59 EKCLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVK 118 E CL G G +++ A + + ++FVG L P+V+D MLY+ F + Sbjct: 8841 EACLENAKGAMFGGY----HLRVDRAGGNENRVQDTKSTVFVGGLPPNVEDEMLYQAFAQ 8674 Query: 119 VYPSCRGGKVVLDQ-TGVSKGYGFVKF 144 S + V D+ TG+ KG +VKF Sbjct: 8673 C-GSVESVRCVRDKVTGIGKGIAYVKF 8596 >supercont1.505 of Sphaeroforma arctica JP610 Length = 66328 Score = 34.3 bits (77), Expect = 0.37 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = -2 Query: 19 ISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKING 67 I + F +G+ V + + N G G+CFVEF + A + + +ING Sbjct: 54939 IKKTFGKVGKVVDPIHMPFNASDGKTKGFCFVEFTNPDEARRAVQQING 54793 >supercont1.419 of Sphaeroforma arctica JP610 Length = 75636 Score = 32.7 bits (73), Expect = 1.1 Identities = 16/51 (31%), Positives = 29/51 (56%) Frame = -3 Query: 2 AASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEF 52 A +L++G+L Y E + F+ +GE V + + +R P G+CF+E+ Sbjct: 11551 ACTLYVGNLSFYTTEEQVYELFSKVGE-VKRIIMGLDRFKKTPCGFCFIEY 11402 >supercont1.28 of Sphaeroforma arctica JP610 Length = 221562 Score = 31.2 bits (69), Expect = 3.2 Identities = 13/32 (40%), Positives = 21/32 (65%) Frame = -1 Query: 128 VVLDQTGVSKGYGFVKFTDELEQKRALTECQG 159 V++ +TG ++GYGFV F + + RA+ E G Sbjct: 19269 VIIFRTGKNRGYGFVSFREVGDYARAMKEMNG 19174 Database: S.arctica/genome.fa Posted date: Nov 21, 2011 7:47 PM Number of letters in database: 121,588,341 Number of sequences in database: 15,618 Lambda K H 0.317 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,397,588 Number of Sequences: 15618 Number of extensions: 352615 Number of successful extensions: 1163 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 418 Number of HSP's successfully gapped in prelim test: 60 Number of HSP's that attempted gapping in prelim test: 675 Number of HSP's gapped (non-prelim): 612 length of query: 287 length of database: 40,529,447 effective HSP length: 108 effective length of query: 179 effective length of database: 38,842,703 effective search space: 6952843837 effective search space used: 6952843837 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 65 (29.6 bits)