TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|8923460|ref|NP_060316.1| tRNA selenocysteine 1-associated protein 1 [Homo sapiens] (287 letters) Database: L.tarentolae/genome.fa 7267 sequences; 31,598,840 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Lt_contig3266 | | 1 to 2384 75 7e-14 Lt_contig29 | | 1 to 16658 59 3e-09 Lt_contig3632 | | 1 to 2373 50 1e-06 Lt_contig71 | | 1 to 2161 39 0.003 Lt_contig7166 | | 1 to 7282 37 0.012 Lt_contig5405 | | 1 to 2738 35 0.044 Lt_contig26 | | 1 to 1930 35 0.044 Lt_contig1525 | | 1 to 6437 35 0.076 Lt_contig6547 | | 1 to 4064 35 0.076 Lt_contig6254 | | 1 to 24173 34 0.099 Lt_contig6865 | | 1 to 21365 33 0.22 Lt_contig7015 | | 1 to 7626 33 0.29 Lt_contig1259 | | 1 to 3553 31 1.1 Lt_contig4037 | | 1 to 1121 31 1.1 Lt_contig374 | | 1 to 5376 30 1.4 Lt_contig6114 | | 1 to 4517 29 3.2 Lt_contig4725 | | 1 to 9675 29 4.2 Lt_contig5968 | | 1 to 11700 28 7.1 Lt_contig5963 | | 1 to 3402 28 7.1 Lt_contig5753 | | 1 to 6892 28 7.1 Lt_contig4747 | | 1 to 3098 28 7.1 >Lt_contig3266 | | 1 to 2384 Length = 2384 Score = 74.7 bits (182), Expect = 7e-14 Identities = 53/162 (32%), Positives = 89/162 (54%), Gaps = 4/162 (2%) Frame = -1 Query: 3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62 AS+++GDL+ ++E + F + G T+++V++ R+ +T GY +V F + +AEK + Sbjct: 1349 ASIYVGDLDATINEPQLVELFKSFG-TILNVRVCRDIITQRSLGYGYVNFDNHESAEKAI 1173 Query: 63 HKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYS----LFVGDLTPDVDDGMLYEFFVK 118 +N K + K +L + +Q D + YS +FV +L DVD L++ F K Sbjct: 1172 ESMNFKRVGD----KCVRLMW----QQRDPALRYSGNGNVFVKNLEKDVDSKHLHDIFTK 1017 Query: 119 VYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGA 160 + + KV+ D+ G S+GYGFV F DE K A+ + GA Sbjct: 1016 -FGAILSCKVMEDEEGKSRGYGFVHFKDETSAKDAIVKMNGA 894 >Lt_contig29 | | 1 to 16658 Length = 16658 Score = 59.3 bits (142), Expect = 3e-09 Identities = 55/180 (30%), Positives = 83/180 (46%), Gaps = 4/180 (2%) Frame = -3 Query: 4 SLWMGDLEPYMD--ENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKC 61 S+++GDL + E IS F+T+ V+SVK+ R+ T GY +V F A AEK Sbjct: 2013 SVYVGDLPIDLPRPEEAISSLFSTVAP-VVSVKVCRDMATQRSLGYGYVNFQTTADAEKV 1837 Query: 62 LHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKV-- 119 + +N G P ++ ++ ++ S ++FV L ++ L F K Sbjct: 1836 IDALN---YTGIAPGRQIRVMFSIRDPLQRKSGLNNVFVKKLDTAINAKELQSAFTKCGR 1666 Query: 120 YPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 179 SC KV LD G SKGYGFV+F K AL LG+ V ++ + + R Sbjct: 1665 VLSC---KVALDSAGNSKGYGFVQFETAEGAKAALD--MNGTKLGNSEVVVAPFVRRVDR 1501 >Lt_contig3632 | | 1 to 2373 Length = 2373 Score = 50.4 bits (119), Expect = 1e-06 Identities = 28/78 (35%), Positives = 44/78 (56%) Frame = -2 Query: 94 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRA 153 P S++VG L PD+ + LY++FV++ P V T S GYG+V F D + ++A Sbjct: 1832 PNPSIWVGGLDPDLQEQKLYDYFVRIGPVISVRVCVDSATQKSLGYGYVNFQDPADAEKA 1653 Query: 154 LTECQGAVGLGSKPVRLS 171 L Q LGS+ +R++ Sbjct: 1652 LD--QAGTKLGSRYLRIA 1605 Score = 49.7 bits (117), Expect = 2e-06 Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 2/158 (1%) Frame = -2 Query: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63 S+W+G L+P + E + F +G V+SV++ + T GY +V F D A AEK L Sbjct: 1823 SIWVGGLDPDLQEQKLYDYFVRIG-PVISVRVCVDSATQKSLGYGYVNFQDPADAEKALD 1647 Query: 64 KINGKPLPGATPAKRFKLNYATYGKQPD--NSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121 + G R+ L A + P S ++ V L VD L E F K + Sbjct: 1646 Q------AGTKLGSRY-LRIAKIQRDPSKRRSGVNNILVKKLPKSVDTYALKEMFSK-FG 1491 Query: 122 SCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQG 159 + D+ G S+GY + F E A+ E G Sbjct: 1490 RLTAIGLACDEKGESRGYARISFEREESAVDAVKEMDG 1377 Score = 43.1 bits (100), Expect = 2e-04 Identities = 44/195 (22%), Positives = 83/195 (42%), Gaps = 14/195 (7%) Frame = -2 Query: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63 +L++ +L+P + + + F GE V S K+ AG +V F A + + Sbjct: 1298 NLYVKNLDPAVTDEKLRAFFGKYGE-VSSAKVRDLGAMVSEAGLGYVAFQKHEDASRAVE 1122 Query: 64 KINGKPLPGATPAKRFKLNYATYGKQPDNSPEY-------------SLFVGDLTPDVDDG 110 ++NGK A ++ ++ E +L+V V Sbjct: 1121 ELNGKECEIAKAGSTLDVSRFRSREERQRDRERQRRERAQQHTKYPNLYVKGFDDTVTSE 942 Query: 111 MLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 169 L E F + Y V++D +TG+S+ +GFV D+ +A+ E G+ L +P+ Sbjct: 941 RLEELFQR-YGETVSVTVMMDKETGMSRCFGFVSMKDQNAASQAIQELNGSTFLSPRPLF 765 Query: 170 LSVAIPKASRVKPVE 184 ++ A+ K +R + +E Sbjct: 764 VTYALRKDARRQNLE 720 >Lt_contig71 | | 1 to 2161 Length = 2161 Score = 39.3 bits (90), Expect = 0.003 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Frame = -3 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALT 155 +L V L VDD FF + + V+ D TG S+G+GFV+FT ++ RAL Sbjct: 485 NLLVRFLDHAVDDTQFRVFF-EPFGEISSSMVMRDIFTGESRGFGFVRFTRSVDAARALR 309 Query: 156 ECQGAVGLGSKPVRL 170 EC G +G K V + Sbjct: 308 ECDGK-KIGGKAVNV 267 >Lt_contig7166 | | 1 to 7282 Length = 7282 Score = 37.4 bits (85), Expect = 0.012 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Frame = -2 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQT-GVSKGYGFVKFTDE 147 +LFV L ++ D L + FV+ P+ KV+LD T G SKG+GFV F E Sbjct: 2070 NLFVAKLPRNLTDADLEQIFVQYNPT--SAKVMLDATTGKSKGFGFVLFASE 1921 >Lt_contig5405 | | 1 to 2738 Length = 2738 Score = 35.4 bits (80), Expect = 0.044 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Frame = +2 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQT-GVSKGYGFVKFTDE 147 +LFV L ++ D L F PS K++LD T G SKG+GFV F +E Sbjct: 656 NLFVAKLPRNISDADLLHIFGDFGPS--SAKIMLDPTTGKSKGFGFVLFEEE 805 >Lt_contig26 | | 1 to 1930 Length = 1930 Score = 35.4 bits (80), Expect = 0.044 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Frame = +1 Query: 90 PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDEL 148 P+ +L V + VD+ L + F + P K+V D +T S+GYGFVK+ Sbjct: 427 PEPEALRNLMVNYIPTTVDEMQLRQLFERFGP-IESVKIVCDRETRQSRGYGFVKYHSAA 603 Query: 149 EQKRALTECQG 159 ++A+TE G Sbjct: 604 SAQQAVTELNG 636 Score = 33.9 bits (76), Expect = 0.13 Identities = 24/76 (31%), Positives = 40/76 (52%) Frame = +1 Query: 14 MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGA 73 +DE + + F G + SVKI+ +R T GY FV++ A+A++ + ++NG + Sbjct: 478 VDEMQLRQLFERFGP-IESVKIVCDRETRQSRGYGFVKYHSAASAQQAVTELNGFNILN- 651 Query: 74 TPAKRFKLNYATYGKQ 89 KR K+ A G Q Sbjct: 652 ---KRLKVALAASGNQ 690 >Lt_contig1525 | | 1 to 6437 Length = 6437 Score = 34.7 bits (78), Expect = 0.076 Identities = 24/75 (32%), Positives = 38/75 (50%) Frame = -1 Query: 10 LEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKP 69 L P M+E + F G + SVKII +++TG GY FV++ +A + +N Sbjct: 5456 LPPLMNEAQVYELFGQFGR-IESVKIIYDKITGESRGYGFVKYQFFFSATYAVFYLNRFE 5280 Query: 70 LPGATPAKRFKLNYA 84 + G K+ K+ YA Sbjct: 5279 IGG----KKLKVAYA 5247 Score = 33.1 bits (74), Expect = 0.22 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Frame = -1 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKF 144 +L V L P +++ +YE F + + K++ D+ TG S+GYGFVK+ Sbjct: 5474 NLIVNYLPPLMNEAQVYELFGQ-FGRIESVKIIYDKITGESRGYGFVKY 5331 >Lt_contig6547 | | 1 to 4064 Length = 4064 Score = 34.7 bits (78), Expect = 0.076 Identities = 19/69 (27%), Positives = 34/69 (49%) Frame = -2 Query: 2 AASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKC 61 + ++++G+L Y E + F+ G + + + N +T P G+CFV F A A Sbjct: 2542 STTVYVGNLSFYTAEEQVYNHFSPCGH-IRDIVMGLNEVTRCPCGFCFVVFESQAAAVLA 2366 Query: 62 LHKINGKPL 70 + +NG L Sbjct: 2365 VQVLNGSLL 2339 >Lt_contig6254 | | 1 to 24173 Length = 24173 Score = 34.3 bits (77), Expect = 0.099 Identities = 24/66 (36%), Positives = 32/66 (48%) Frame = -2 Query: 7 MGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKIN 66 M +L P E + R FA V+SV+I+R+ TG Y FVEF + A K + Sbjct: 22129 MANLHPETVEEDL-RHFADQFGRVLSVRIVRHHKTGKSCRYAFVEFNLVGEARKAVQFHR 21953 Query: 67 GKPLPG 72 K L G Sbjct: 21952 KKRLKG 21935 >Lt_contig6865 | | 1 to 21365 Length = 21365 Score = 33.1 bits (74), Expect = 0.22 Identities = 19/50 (38%), Positives = 30/50 (60%) Frame = +1 Query: 132 QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRVK 181 +TG+ KGYGFV F +E + A+ QG + + V++ +A P+AS K Sbjct: 14329 ETGLCKGYGFVLFENEQDALNAVIALQGHC-IRNTRVQVRLARPEASAKK 14475 >Lt_contig7015 | | 1 to 7626 Length = 7626 Score = 32.7 bits (73), Expect = 0.29 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 3/73 (4%) Frame = -2 Query: 90 PDNSPEY--SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTD 146 P + Y L V L DV L+ F + P G +++ D QT + +GYGFV F Sbjct: 1199 PSSDERYRKQLIVNYLAQDVTSADLHTLFARFGP-LDGARIIFDRQTSMPRGYGFVYFRY 1023 Query: 147 ELEQKRALTECQG 159 K+A+ G Sbjct: 1022 PDSAKQAVDTMNG 984 >Lt_contig1259 | | 1 to 3553 Length = 3553 Score = 30.8 bits (68), Expect = 1.1 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%) Frame = +2 Query: 89 QPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDE 147 +P +S + ++FV L P D L+ F + KV+L+ +TGVSK GFV+F + Sbjct: 1172 EPGHS-DRNIFVSKLPPTFKDSDLHGMFQN-FGHVISAKVMLNVKTGVSKETGFVQFMNH 1345 Query: 148 LEQKRA 153 + RA Sbjct: 1346 KDALRA 1363 >Lt_contig4037 | | 1 to 1121 Length = 1121 Score = 30.8 bits (68), Expect = 1.1 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = -3 Query: 127 KVVLD-QTGVSKGYGFVKFTDELEQKRALTECQG 159 K+V D +T S+GYGFVK+ ++A+TE G Sbjct: 1116 KIVCDRETRQSRGYGFVKYHSAASAQQAVTELNG 1015 Score = 30.0 bits (66), Expect = 1.9 Identities = 19/57 (33%), Positives = 31/57 (54%) Frame = -3 Query: 33 VKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQ 89 VKI+ +R T GY FV++ A+A++ + ++NG + KR K+ A G Q Sbjct: 1119 VKIVCDRETRQSRGYGFVKYHSAASAQQAVTELNGFNILN----KRLKVALAASGNQ 961 >Lt_contig374 | | 1 to 5376 Length = 5376 Score = 30.4 bits (67), Expect = 1.4 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +1 Query: 120 YPSCRGGKVVLDQTGVSKGYGFVKFTD 146 Y R K++ D GVS+GYGF++F + Sbjct: 4285 YGPIRNVKLLKDTAGVSRGYGFIEFVN 4365 >Lt_contig6114 | | 1 to 4517 Length = 4517 Score = 29.3 bits (64), Expect = 3.2 Identities = 22/70 (31%), Positives = 30/70 (42%) Frame = -3 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE 156 +L+V L D L+E F + P + T KGYGFV F + A +E Sbjct: 2349 NLYVASLPEWFTDADLHELFTRFGPIVSAKVMCHKGTHQCKGYGFVLFQRTEDAAVARSE 2170 Query: 157 CQGAVGLGSK 166 G V G+K Sbjct: 2169 MIGHVVGGNK 2140 >Lt_contig4725 | | 1 to 9675 Length = 9675 Score = 28.9 bits (63), Expect = 4.2 Identities = 16/41 (39%), Positives = 26/41 (63%) Frame = -3 Query: 133 TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 173 T +KG FV+F+ + RAL C+GA+ +G + +R+S A Sbjct: 7636 TRQNKGAAFVRFSSAEDAVRALQLCRGAILMG-RLLRVSAA 7517 >Lt_contig5968 | | 1 to 11700 Length = 11700 Score = 28.1 bits (61), Expect = 7.1 Identities = 18/68 (26%), Positives = 30/68 (44%) Frame = +3 Query: 69 PLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKV 128 P+P +TPA++++ K D++P Y + T L +K +P C + Sbjct: 2364 PVPRSTPARQYR-------KPKDDAPAYDPLLWSNTDTSYIATLATHTMKYHPPCTAQQG 2522 Query: 129 VLDQTGVS 136 L Q G S Sbjct: 2523 GLQQRGTS 2546 >Lt_contig5963 | | 1 to 3402 Length = 3402 Score = 28.1 bits (61), Expect = 7.1 Identities = 16/79 (20%), Positives = 32/79 (40%) Frame = -1 Query: 5 LWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 64 LW+G+L PY+ ++ F G ++ R+ + F+ + + + Sbjct: 1593 LWVGNLVPYITNEKLTEVFEVFGPISSVSRLGRSNM-------AFLHYETVEQCTMAIET 1435 Query: 65 INGKPLPGATPAKRFKLNY 83 + G+P+ G LNY Sbjct: 1434 MKGRPIEGV----MLSLNY 1390 >Lt_contig5753 | | 1 to 6892 Length = 6892 Score = 28.1 bits (61), Expect = 7.1 Identities = 13/45 (28%), Positives = 24/45 (53%) Frame = +2 Query: 30 VMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 74 ++S + + T GY FV FAD A C+ ++ + +PG++ Sbjct: 3776 IVSAAVAHHPETNESRGYGFVLFADERDAASCVRTLHQQRVPGSS 3910 >Lt_contig4747 | | 1 to 3098 Length = 3098 Score = 28.1 bits (61), Expect = 7.1 Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 2/53 (3%) Frame = +3 Query: 94 PEYSLFVGDLTPDVDDGMLYEFFVKV-YPSCRGGKVVLD-QTGVSKGYGFVKF 144 PE S+F+G++ + + ++ FF + + ++V D +TG KG+G+V+F Sbjct: 915 PETSIFLGNVAYNTSEEDVWNFFQEHGITDVKRVRLVRDRETGDCKGFGYVEF 1073 Database: L.tarentolae/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 31,598,840 Number of sequences in database: 7267 Lambda K H 0.317 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,781,718 Number of Sequences: 7267 Number of extensions: 107027 Number of successful extensions: 492 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 363 Number of HSP's successfully gapped in prelim test: 13 Number of HSP's that attempted gapping in prelim test: 119 Number of HSP's gapped (non-prelim): 386 length of query: 287 length of database: 10,532,946 effective HSP length: 99 effective length of query: 188 effective length of database: 9,813,513 effective search space: 1844940444 effective search space used: 1844940444 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 60 (27.7 bits)