TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|8923460|ref|NP_060316.1| tRNA selenocysteine 1-associated protein 1 [Homo sapiens] (287 letters) Database: L.donovani_BPK282A1/genome.fa 36 sequences; 32,444,998 total letters Searching....................................done Score E Sequences producing significant alignments: (bits) Value contig_35 76 3e-14 contig_25 59 5e-09 contig_18 44 1e-04 contig_30 40 0.003 contig_29 36 0.029 contig_09 33 0.24 contig_10 32 0.41 contig_16 32 0.54 contig_32 31 1.2 contig_08 31 1.2 >contig_35 Length = 2113966 Score = 75.9 bits (185), Expect = 3e-14 Identities = 55/168 (32%), Positives = 90/168 (53%), Gaps = 4/168 (2%) Frame = +3 Query: 3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62 AS+++GDL+ ++E + F G T+++V++ R+ +T GY +V F + +AEK + Sbjct: 2082417 ASIYVGDLDAAINEPQLVELFKPFG-TILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAI 2082593 Query: 63 HKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYS----LFVGDLTPDVDDGMLYEFFVK 118 +N K + K +L + +Q D + YS +FV +L DVD L++ F K Sbjct: 2082594 ESMNFKRVGD----KCVRLMW----QQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTK 2082749 Query: 119 VYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSK 166 + S KV+ D+ G S+GYGFV F DE K A+ + GA S+ Sbjct: 2082750 -FGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASE 2082890 Score = 50.4 bits (119), Expect = 1e-06 Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 3/87 (3%) Frame = +1 Query: 88 KQPD---NSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKF 144 KQP P S++VG L PD+ + LY++FV++ P V T S GYG+V F Sbjct: 1655728 KQPTMAFTGPNPSIWVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNF 1655907 Query: 145 TDELEQKRALTECQGAVGLGSKPVRLS 171 D + ++AL Q LGS+ +R++ Sbjct: 1655908 QDPADAEKALD--QAGSKLGSRYLRIA 1655982 Score = 49.3 bits (116), Expect = 3e-06 Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 2/158 (1%) Frame = +1 Query: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63 S+W+G L+P + E + F +G V SV++ + T GY +V F D A AEK L Sbjct: 1655764 SIWVGGLDPDLQEQKLYDYFVRIG-PVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALD 1655940 Query: 64 KINGKPLPGATPAKRFKLNYATYGKQPD--NSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121 + G+ R+ L A + P S ++ V L VD L E F K + Sbjct: 1655941 Q------AGSKLGSRY-LRIAKIQRDPSKRRSGVNNILVKKLPKSVDTYALKEMFSK-FG 1656096 Query: 122 SCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQG 159 + D+ G S+GY + F E A+ E G Sbjct: 1656097 RLTAIGLACDEKGESRGYARISFEREESAVDAVREMDG 1656210 Score = 47.8 bits (112), Expect = 1e-05 Identities = 48/195 (24%), Positives = 89/195 (45%), Gaps = 14/195 (7%) Frame = +1 Query: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63 +L++ +L+P + + + FA GE V S K+ AG +V F A + + Sbjct: 1656289 NLYVKNLDPAVTDEKLRAFFAKYGE-VSSAKVRDLGAVQSEAGLGYVAFQKHEDAARAVE 1656465 Query: 64 KINGK---------PLPGATPAKRFKLNYATYGKQPDNSPEYS----LFVGDLTPDVDDG 110 ++NGK PL + R + ++ + + ++S L+V V Sbjct: 1656466 ELNGKECEISKAGSPLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDTVTSE 1656645 Query: 111 MLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 169 L E F + Y V++D +TGVS+ +GFV D+ +A+ E G+ L +P+ Sbjct: 1656646 RLEELFQR-YGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQELNGSTFLSPRPLF 1656822 Query: 170 LSVAIPKASRVKPVE 184 ++ A+ K +R + +E Sbjct: 1656823 VTYALRKDARRQNLE 1656867 >contig_25 Length = 897883 Score = 58.5 bits (140), Expect = 5e-09 Identities = 54/180 (30%), Positives = 86/180 (47%), Gaps = 4/180 (2%) Frame = -1 Query: 4 SLWMGDLEPYMD--ENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKC 61 S+++GDL + E I+ F+T+ V+SVK+ R+ T GY +V F A AEK Sbjct: 21100 SVYVGDLPIDLPRPEEAINNLFSTVAP-VVSVKVCRDMATQRSLGYGYVNFQTTADAEKV 20924 Query: 62 LHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKV-- 119 + +N G P ++ ++ ++ S ++FV L ++ L F K Sbjct: 20923 IDALN---YTGIAPGRQIRVMFSIRDPLQRKSGMNNVFVKKLDTAINAKELQAAFTKCGR 20753 Query: 120 YPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 179 SC KV LD G SKGYGFV+F + E +A + G+ LG V ++ + + R Sbjct: 20752 VLSC---KVALDSAGNSKGYGFVQF-ETAEGAKAALDMNGS-KLGDSEVVVAPFVRRVDR 20588 Score = 38.9 bits (89), Expect = 0.004 Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 1/113 (0%) Frame = -2 Query: 68 KPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGK 127 KP P A P Y PD +L V L P +++ +YE F + + K Sbjct: 173967 KPEPIAAPVAGEGSTSGGYAFDPDALR--NLIVNYLPPLMNEAQVYELFGQ-FGRIESVK 173797 Query: 128 VVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 179 ++ D+ TG S+GYGFVK+ A++ C +G K ++++ A A++ Sbjct: 173796 IIYDKITGESRGYGFVKYQFFFSATYAVS-CLNRFEIGGKKLKVAYANAPAAK 173641 Score = 35.8 bits (81), Expect = 0.038 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Frame = -1 Query: 90 PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDEL 148 P+ +L V + VD+ L + F + P G K+V D +T S+GYGFVK+ Sbjct: 168253 PEPEALRNLMVNYIPTTVDEVQLRQLFERFGP-IEGVKIVCDRETRQSRGYGFVKYHSAA 168077 Query: 149 EQKRALTECQG 159 ++A+ E G Sbjct: 168076 SAQQAVNELNG 168044 Score = 35.8 bits (81), Expect = 0.038 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Frame = -3 Query: 90 PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDEL 148 P+ +L V + VD+ L + F + P G K+V D +T S+GYGFVK+ Sbjct: 158348 PEPEALRNLMVNYIPTTVDEVQLRQLFERFGP-IEGVKIVCDRETRQSRGYGFVKYHSAA 158172 Query: 149 EQKRALTECQG 159 ++A+ E G Sbjct: 158171 SAQQAVNELNG 158139 Score = 34.3 bits (77), Expect = 0.11 Identities = 24/75 (32%), Positives = 38/75 (50%) Frame = -2 Query: 10 LEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKP 69 L P M+E + F G + SVKII +++TG GY FV++ +A + +N Sbjct: 173868 LPPLMNEAQVYELFGQFGR-IESVKIIYDKITGESRGYGFVKYQFFFSATYAVSCLNRFE 173692 Query: 70 LPGATPAKRFKLNYA 84 + G K+ K+ YA Sbjct: 173691 IGG----KKLKVAYA 173659 Score = 33.1 bits (74), Expect = 0.24 Identities = 23/76 (30%), Positives = 40/76 (52%) Frame = -1 Query: 14 MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGA 73 +DE + + F G + VKI+ +R T GY FV++ A+A++ ++++NG + Sbjct: 168202 VDEVQLRQLFERFGP-IEGVKIVCDRETRQSRGYGFVKYHSAASAQQAVNELNGFNILN- 168029 Query: 74 TPAKRFKLNYATYGKQ 89 KR K+ A G Q Sbjct: 168028 ---KRLKVALAASGNQ 167990 Score = 33.1 bits (74), Expect = 0.24 Identities = 23/76 (30%), Positives = 40/76 (52%) Frame = -3 Query: 14 MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGA 73 +DE + + F G + VKI+ +R T GY FV++ A+A++ ++++NG + Sbjct: 158297 VDEVQLRQLFERFGP-IEGVKIVCDRETRQSRGYGFVKYHSAASAQQAVNELNGFNILN- 158124 Query: 74 TPAKRFKLNYATYGKQ 89 KR K+ A G Q Sbjct: 158123 ---KRLKVALAASGNQ 158085 >contig_18 Length = 735640 Score = 43.9 bits (102), Expect = 1e-04 Identities = 38/117 (32%), Positives = 51/117 (43%), Gaps = 9/117 (7%) Frame = -1 Query: 63 HKINGKPLPGATPAKRFKLNYATYGKQPDNSP--------EYSLFVGDLTPDVDDGMLYE 114 HK G+ PAK K++Y G P + +L V L VDD Sbjct: 90247 HKRRGEE*DSFFPAKGRKMSYKHNGGYHRGRPSVATAADSKLNLLVRFLDHGVDDSQFRV 90068 Query: 115 FFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 170 FF + + V+ D TG S+G+GFV+F + RAL EC G LG K V + Sbjct: 90067 FF-EPFGEITSSMVMRDIFTGESRGFGFVRFARSADAARALRECDGK-RLGGKAVNV 89903 Score = 33.9 bits (76), Expect = 0.14 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 1/102 (0%) Frame = -3 Query: 64 KINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSC 123 K+ +P G K + Y + P ++ +LFV L +VDD L E F + Sbjct: 73676 KLPFRPRHGRKMTKNSQHQYKSSSFTPSST---NLFVRYLPREVDDNRLREIF-SAFGKI 73509 Query: 124 RGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLG 164 V+ D +G S G FV++ + E RA+ + G LG Sbjct: 73508 TSSMVMRDIYSGQSLGTAFVRYEEHEEALRAMRDAHGMPLLG 73383 Score = 31.6 bits (70), Expect = 0.71 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Frame = -3 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALT 155 +LFV L +VDD L E F + V+ D +G S G FV++ + E RA+ Sbjct: 61595 NLFVRYLPREVDDNRLREIF-SAFGKITSSMVMRDIYSGQSLGTAFVRYEEHEEALRAMR 61419 Query: 156 ECQGAVGLG 164 + G LG Sbjct: 61418 DAHGMPLLG 61392 >contig_30 Length = 1374157 Score = 39.7 bits (91), Expect = 0.003 Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Frame = -2 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQT-GVSKGYGFVKFTDE 147 +LFV L ++ D L + FV+ P+ G KV+LD T G SKG+GFV F E Sbjct: 800592 NLFVAKLPRNLTDADLEQIFVQYNPT--GAKVMLDATTGKSKGFGFVLFASE 800443 Score = 37.4 bits (85), Expect = 0.013 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%) Frame = -1 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRA 153 +LFV L +++D L F + PS K++LD TG SKG+GFV F +E + +A Sbjct: 808444 NLFVAKLPRNINDADLLHIFSEFGPS--SAKIMLDAATGKSKGFGFVLFDEEEKGAKA 808277 Score = 37.0 bits (84), Expect = 0.017 Identities = 20/69 (28%), Positives = 35/69 (50%) Frame = -3 Query: 2 AASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKC 61 +A++++G+L Y E + F+ G + + + N T P G+CFV F A A Sbjct: 177659 SATVYVGNLSFYTTEEQVYNHFSPCGH-IRDIVMGLNEATRCPCGFCFVVFESQAAAVLA 177483 Query: 62 LHKINGKPL 70 +H ++G L Sbjct: 177482 VHGLDGSLL 177456 Score = 28.1 bits (61), Expect = 7.8 Identities = 16/79 (20%), Positives = 32/79 (40%) Frame = +1 Query: 5 LWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 64 LW+G+L PY+ ++ F G ++ R+ + F+ + + + Sbjct: 376279 LWVGNLVPYITNEKLTEVFEVFGPISSVSRLGRSNM-------AFLHYETVEQCTMAIET 376437 Query: 65 INGKPLPGATPAKRFKLNY 83 + G+P+ G LNY Sbjct: 376438 MKGRPIEGV----MLSLNY 376482 >contig_29 Length = 1258350 Score = 36.2 bits (82), Expect = 0.029 Identities = 23/65 (35%), Positives = 33/65 (50%) Frame = +3 Query: 89 QPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDEL 148 +P +S + ++FV L P D L E F P ++ +TG+SK GFVKFT Sbjct: 635268 EPGHS-DRNIFVSKLPPTFKDADLQELFQNFGPVVSAKVMLNVKTGISKETGFVKFTSYK 635444 Query: 149 EQKRA 153 + RA Sbjct: 635445 DALRA 635459 Score = 34.7 bits (78), Expect = 0.084 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 3/73 (4%) Frame = +3 Query: 90 PDNSPEY--SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTD 146 P N Y L V L DV L+ F + P G +++ D QT + +GYGFV F Sbjct: 1223640 PSNDERYRKQLIVNYLAQDVTSADLHTLFARFGP-LDGARIIFDRQTSMPRGYGFVYFRY 1223816 Query: 147 ELEQKRALTECQG 159 K+A+ G Sbjct: 1223817 PDSAKQAVDTMNG 1223855 >contig_09 Length = 588727 Score = 33.1 bits (74), Expect = 0.24 Identities = 19/50 (38%), Positives = 29/50 (58%) Frame = +1 Query: 132 QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRVK 181 +TG+ KGYGFV F E + A+ QG + + V++ +A P+AS K Sbjct: 19849 ETGMCKGYGFVLFESEQDALNAVIALQGH-SIRNTRVQVRLARPEASAKK 19995 Score = 31.2 bits (69), Expect = 0.92 Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 1/94 (1%) Frame = +1 Query: 74 TPAKRFKLNYATYGKQPD-NSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ 132 +P K LN + P + + +L+V L D L+E F + P + Sbjct: 39313 SPMKNDSLNMSVQASDPAARAYDSNLYVASLPEWFTDADLHELFKRFGPIVSAKVMCHKG 39492 Query: 133 TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSK 166 T KGYGFV F + A +E G V G+K Sbjct: 39493 THHCKGYGFVLFQRTDDAAVARSEMIGHVVGGNK 39594 Score = 29.6 bits (65), Expect = 2.7 Identities = 19/70 (27%), Positives = 31/70 (44%) Frame = +3 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE 156 +++V L DD L + F + ++ SKGYGFV F + ++A+ Sbjct: 27342 NVYVASLPLSFDDQQLQDLFSPYGRIVSARIMRAKKSHASKGYGFVMFREVSSAEKAIEG 27521 Query: 157 CQGAVGLGSK 166 G V GS+ Sbjct: 27522 LHGRVVDGSR 27551 >contig_10 Length = 558170 Score = 32.3 bits (72), Expect = 0.41 Identities = 14/29 (48%), Positives = 18/29 (62%) Frame = -1 Query: 46 GYCFVEFADLATAEKCLHKINGKPLPGAT 74 G F+ AD +T C+ K+NGKPL G T Sbjct: 338255 GRAFLTVADQSTLAYCVSKLNGKPLAGRT 338169 Score = 28.9 bits (63), Expect = 4.6 Identities = 16/41 (39%), Positives = 26/41 (63%) Frame = -1 Query: 133 TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 173 T +KG FV+F+ + RAL C+GA+ +G + +R+S A Sbjct: 339287 TRQNKGAAFVRFSSAEDAVRALQLCRGAILMG-RLLRVSAA 339168 >contig_16 Length = 698406 Score = 32.0 bits (71), Expect = 0.54 Identities = 23/66 (34%), Positives = 32/66 (48%) Frame = +2 Query: 7 MGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKIN 66 M +L P E + R F+ V+SV+I+R+ TG Y FVEF + A K + Sbjct: 662177 MANLHPETVEEDL-RHFSDQFGRVLSVRIVRHYKTGKSRRYAFVEFNLVGEARKAVQFHR 662353 Query: 67 GKPLPG 72 K L G Sbjct: 662354 KKRLKG 662371 >contig_32 Length = 1559911 Score = 30.8 bits (68), Expect = 1.2 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%) Frame = -1 Query: 120 YPSCRGGKVVLDQTGVSKGYGFVKFTDE---LEQKRALTECQGAVGLGSKPVRLSVAIPK 176 Y R K++ D GVS+GYGF++F + L R L G + + +S AI Sbjct: 1114975 YGPIRNVKLLKDTAGVSRGYGFIEFVNHNVALNTLRMLNNNPTVFG-DQRRLMVSFAIES 1114799 Query: 177 ASRVKPVE 184 S V+ ++ Sbjct: 1114798 MSAVQKLQ 1114775 >contig_08 Length = 505720 Score = 30.8 bits (68), Expect = 1.2 Identities = 16/54 (29%), Positives = 24/54 (44%) Frame = -2 Query: 122 SCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIP 175 +CRGG V + G++ D E +RAL + + P R S A+P Sbjct: 129045 TCRGGGTVCEPVGITSAKSRPACDDAAELERALAKLTARSCCDAAPARTSAALP 128884 Database: L.donovani_BPK282A1/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 32,444,998 Number of sequences in database: 36 Lambda K H 0.317 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,977,511 Number of Sequences: 36 Number of extensions: 111335 Number of successful extensions: 487 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 415 Number of HSP's gapped (non-prelim): 152 length of query: 287 length of database: 10,814,999 effective HSP length: 99 effective length of query: 188 effective length of database: 10,811,435 effective search space: 2032549780 effective search space used: 2032549780 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 60 (27.7 bits)