TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|8923460|ref|NP_060316.1| tRNA selenocysteine 1-associated protein 1 [Homo sapiens] (287 letters) Database: G.niphandrodes/genome.fa 3680 sequences; 15,362,869 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|338241480|gb|AFNH01002425.1| Gregarina niphandrodes asmbl.316... 58 3e-09 gi|338242832|gb|AFNH01001749.1| Gregarina niphandrodes asmbl.254... 45 2e-05 gi|338240694|gb|AFNH01002819.1| Gregarina niphandrodes asmbl.353... 44 5e-05 gi|338241021|gb|AFNH01002656.1| Gregarina niphandrodes asmbl.338... 44 5e-05 gi|338244953|gb|AFNH01000688.1| Gregarina niphandrodes asmbl.159... 42 3e-04 gi|338242620|gb|AFNH01001855.1| Gregarina niphandrodes asmbl.264... 40 0.001 gi|338241217|gb|AFNH01002558.1| Gregarina niphandrodes asmbl.328... 38 0.003 gi|338239495|gb|AFNH01003418.1| Gregarina niphandrodes asmbl.760... 37 0.010 gi|338240969|gb|AFNH01002682.1| Gregarina niphandrodes asmbl.340... 35 0.038 gi|338244917|gb|AFNH01000706.1| Gregarina niphandrodes asmbl.160... 33 0.084 gi|338241486|gb|AFNH01002422.1| Gregarina niphandrodes asmbl.316... 32 0.32 gi|338240475|gb|AFNH01002928.1| Gregarina niphandrodes asmbl.363... 31 0.55 gi|338240961|gb|AFNH01002686.1| Gregarina niphandrodes asmbl.340... 30 0.93 gi|338241069|gb|AFNH01002632.1| Gregarina niphandrodes asmbl.335... 28 2.7 gi|338241608|gb|AFNH01002361.1| Gregarina niphandrodes asmbl.310... 28 2.7 gi|338241434|gb|AFNH01002448.1| Gregarina niphandrodes asmbl.318... 27 6.0 gi|338242219|gb|AFNH01002055.1| Gregarina niphandrodes asmbl.282... 27 6.0 gi|338240953|gb|AFNH01002690.1| Gregarina niphandrodes asmbl.341... 27 7.9 >gi|338241480|gb|AFNH01002425.1| Gregarina niphandrodes asmbl.3167, whole genome shotgun sequence Length = 7306 Score = 58.2 bits (139), Expect = 3e-09 Identities = 49/178 (27%), Positives = 85/178 (47%), Gaps = 1/178 (0%) Frame = -2 Query: 3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62 A+L+ G+L+ + E+ + G V V + R+++TG GY F+E+ AE + Sbjct: 4506 ATLYAGNLDRRVSEDVLWELCIQAGP-VKHVHVPRDKITGQHQGYGFIEYEQEVDAEYAI 4330 Query: 63 HKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPS 122 + L G K +LN A K+ +LFVG+L P VD+ L+E F + + Sbjct: 4329 RIFSTTCLYG----KPLRLNKAAQDKKMFEVGA-NLFVGNLAPQVDERKLFETFA-AFGN 4168 Query: 123 CRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 179 K++ D +T S+G+GF+ + + A+ G L K + ++ A K S+ Sbjct: 4167 VTSAKIMKDPETSESRGFGFISYDNFQSADSAIKTLSGQF-LSDKQITVTYAFKKDSQ 3997 Score = 35.4 bits (80), Expect = 0.022 Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 5/88 (5%) Frame = -2 Query: 91 DNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELE 149 + + E +L+ G+L V + +L+E ++ P + V D+ TG +GYGF+++ E++ Sbjct: 4521 ERNQEATLYAGNLDRRVSEDVLWELCIQAGP-VKHVHVPRDKITGQHQGYGFIEYEQEVD 4345 Query: 150 QKRAL----TECQGAVGLGSKPVRLSVA 173 + A+ T C L KP+RL+ A Sbjct: 4344 AEYAIRIFSTTC-----LYGKPLRLNKA 4276 >gi|338242832|gb|AFNH01001749.1| Gregarina niphandrodes asmbl.2546, whole genome shotgun sequence Length = 14330 Score = 45.4 bits (106), Expect = 2e-05 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Frame = -3 Query: 4 SLWMGDLEPYMDENFISRAFAT-MGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62 +LW+GDLE + DE +I F ++V SVK+ R++ GY FV+F AE+ L Sbjct: 4866 TLWIGDLERWEDEEYIYAYFEQYFPQSVTSVKVARDKDQQRSLGYGFVDFCSREVAERVL 4687 Query: 63 HKINGKPLPGATPAKRFKLNYA 84 P+ + +RFKL +A Sbjct: 4686 ---AAAPVFKRSHGRRFKLTWA 4630 >gi|338240694|gb|AFNH01002819.1| Gregarina niphandrodes asmbl.3533, whole genome shotgun sequence Length = 14290 Score = 44.3 bits (103), Expect = 5e-05 Identities = 37/114 (32%), Positives = 53/114 (46%) Frame = +2 Query: 55 LATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYE 114 L AE+ L +N P+ G + T K S +LFV +L VD L++ Sbjct: 23 LYVAERALETLNHTPIKGNPCRIMWSQRDPTVRK----STSGNLFVRNLDRGVDSRALHD 190 Query: 115 FFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 168 F ++ + KVV D+ G SKGYGFV F + A+ G + +GSK V Sbjct: 191 TF-SLFGNILSCKVVADEQGRSKGYGFVHFESDEAAALAVDRVNG-MKIGSKEV 346 Score = 42.0 bits (97), Expect = 2e-04 Identities = 28/83 (33%), Positives = 45/83 (54%) Frame = +2 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE 156 +L++ +L+ VDD L F + + + KV+ D+ G SKG+GFV FT E +AL E Sbjct: 1001 NLYIKNLSDSVDDAGLRALF-EAFGTITSAKVMKDEDGHSKGFGFVCFTTPEEATKALAE 1177 Query: 157 CQGAVGLGSKPVRLSVAIPKASR 179 + +KP+ + +A K R Sbjct: 1178 MHLKLH-DAKPLYVGLAEQKDRR 1243 >gi|338241021|gb|AFNH01002656.1| Gregarina niphandrodes asmbl.3381, whole genome shotgun sequence Length = 15051 Score = 44.3 bits (103), Expect = 5e-05 Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 1/82 (1%) Frame = -1 Query: 4 SLWMGDLEPYMDENFISRAFAT-MGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62 +LW+GDLE + DE +I F ++V SVKI R+R GY F++F + AE+ L Sbjct: 13221 TLWIGDLERWEDEEYIYNYFEQYFPQSVTSVKIARDRDQQRSLGYGFIDFVNREVAERVL 13042 Query: 63 HKINGKPLPGATPAKRFKLNYA 84 + +RFKL +A Sbjct: 13041 ASAAAFK---RSHGRRFKLTWA 12985 Score = 33.5 bits (75), Expect = 0.084 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 4/85 (4%) Frame = -1 Query: 74 TPAKRFKLNYATYGKQPDNSPEY--SLFVGDLTPDVDDGMLYEFFVKVYP-SCRGGKVVL 130 TP +Y + G P + E +L++GDL D+ +Y +F + +P S K+ Sbjct: 13296 TPTPAGGQSYTSSGVGPRSVEENRTTLWIGDLERWEDEEYIYNYFEQYFPQSVTSVKIAR 13117 Query: 131 DQTGV-SKGYGFVKFTDELEQKRAL 154 D+ S GYGF+ F + +R L Sbjct: 13116 DRDQQRSLGYGFIDFVNREVAERVL 13042 >gi|338244953|gb|AFNH01000688.1| Gregarina niphandrodes asmbl.15997, whole genome shotgun sequence Length = 27684 Score = 41.6 bits (96), Expect = 3e-04 Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Frame = -3 Query: 95 EYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRA 153 +Y +F GDL +V D +L F K + S + +VV D +TG SKGYGFV F + A Sbjct: 18574 DYRVFCGDLGNEVTDEILSTAF-KHFRSFQRARVVRDSRTGKSKGYGFVSFLSPYDMLAA 18398 Query: 154 LTECQGAVGLGSKPVRL 170 + + +G++P+++ Sbjct: 18397 I-KTMNRKYVGNRPIKV 18350 >gi|338242620|gb|AFNH01001855.1| Gregarina niphandrodes asmbl.2642, whole genome shotgun sequence Length = 26459 Score = 39.7 bits (91), Expect = 0.001 Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 1/53 (1%) Frame = -2 Query: 96 YSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDE 147 YS+FVG++ + LYE F+K Y + R +++ D T +SKGYG+V FT++ Sbjct: 4834 YSVFVGNIPRSWSEDHLYESFLK-YGNIRNVRLLRDSITHLSKGYGYVLFTNK 4679 Score = 32.3 bits (72), Expect = 0.19 Identities = 16/34 (47%), Positives = 20/34 (58%) Frame = +3 Query: 46 GYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 79 G+ FVEFAD+A A + L +NG L G T F Sbjct: 12330 GFGFVEFADVADAREALENMNGAELFGKTLTVNF 12431 >gi|338241217|gb|AFNH01002558.1| Gregarina niphandrodes asmbl.3288, whole genome shotgun sequence Length = 45373 Score = 38.1 bits (87), Expect = 0.003 Identities = 41/147 (27%), Positives = 58/147 (39%), Gaps = 3/147 (2%) Frame = +3 Query: 15 DENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK---INGKPLP 71 DE F + FA G + I+R R +G G+ FV FAD+ +CL ++G+ L Sbjct: 22899 DERFAAH-FAKYG-VLEDAAIVRER-SGRSKGFGFVTFADIQAMRQCLDSALHLDGRKLF 23069 Query: 72 GATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD 131 A F +FV +L D L +F Y VV Sbjct: 23070 VKVAADPFSEFMVDGVPVQGRCSRRKIFVRNLGLHCDADALRAYFSH-YGPIEDCAVVYG 23246 Query: 132 QTGVSKGYGFVKFTDELEQKRALTECQ 158 GVSKG+ F+ + + RA E Q Sbjct: 23247 PNGVSKGFAFITYAKQDSAVRAAAEPQ 23327 Score = 27.7 bits (60), Expect = 4.6 Identities = 17/57 (29%), Positives = 27/57 (47%) Frame = +3 Query: 98 LFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRAL 154 L V ++ + D F K Y +V +++G SKG+GFV F D ++ L Sbjct: 22866 LMVRNIHYNTTDERFAAHFAK-YGVLEDAAIVRERSGRSKGFGFVTFADIQAMRQCL 23033 >gi|338239495|gb|AFNH01003418.1| Gregarina niphandrodes asmbl.760, whole genome shotgun sequence Length = 1547 Score = 36.6 bits (83), Expect = 0.010 Identities = 16/25 (64%), Positives = 20/25 (80%) Frame = +3 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYP 121 SL+VGDL+PDV + +LYEFF V P Sbjct: 1377 SLYVGDLSPDVSETVLYEFFNSVGP 1451 >gi|338240969|gb|AFNH01002682.1| Gregarina niphandrodes asmbl.3404, whole genome shotgun sequence Length = 6591 Score = 34.7 bits (78), Expect = 0.038 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Frame = +2 Query: 98 LFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTD 146 +FVG L P + L ++F K Y VVLD+ TG S+G+GFV F + Sbjct: 5195 MFVGGLGPHITPRSLIDYFSK-YGEVVDSSVVLDRVTGRSRGFGFVIFKE 5341 >gi|338244917|gb|AFNH01000706.1| Gregarina niphandrodes asmbl.16011, whole genome shotgun sequence Length = 22759 Score = 33.5 bits (75), Expect = 0.084 Identities = 19/59 (32%), Positives = 30/59 (50%) Frame = +2 Query: 16 ENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 74 E+ + AF GE V + + +R TG GY VEF + A + + +++G L G T Sbjct: 15869 EDTVLEAFEPFGE-VHGLHLNLDRRTGYAKGYALVEFKEKEAAARAIQEMDGSQLLGRT 16042 >gi|338241486|gb|AFNH01002422.1| Gregarina niphandrodes asmbl.3164, whole genome shotgun sequence Length = 28666 Score = 31.6 bits (70), Expect = 0.32 Identities = 15/40 (37%), Positives = 25/40 (62%) Frame = +2 Query: 23 FATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62 FA+ G+ + V I+ +++TG P GY ++EFA+ A L Sbjct: 5963 FASCGK-IQRVTIMVDKMTGHPKGYAYIEFAEEGGASSAL 6079 >gi|338240475|gb|AFNH01002928.1| Gregarina niphandrodes asmbl.3632, whole genome shotgun sequence Length = 17175 Score = 30.8 bits (68), Expect = 0.55 Identities = 18/56 (32%), Positives = 29/56 (51%) Frame = +3 Query: 10 LEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKI 65 L P+ +++ + F G V S II++ TG Y FVEFAD+ ++ K+ Sbjct: 14961 LNPFTEDDDLKTIFEQFGP-VRSCNIIKDWKTGDSLQYGFVEFADVEHCKEAFFKM 15125 >gi|338240961|gb|AFNH01002686.1| Gregarina niphandrodes asmbl.3408, whole genome shotgun sequence Length = 27437 Score = 30.0 bits (66), Expect = 0.93 Identities = 16/43 (37%), Positives = 22/43 (51%) Frame = +2 Query: 112 LYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRAL 154 + +FF R K+V D G SKG G+V+F D R+L Sbjct: 4382 IIDFFSHNAGKVRAIKLVTDSRGKSKGIGYVEFEDSTAVLRSL 4510 >gi|338241069|gb|AFNH01002632.1| Gregarina niphandrodes asmbl.3357, whole genome shotgun sequence Length = 19635 Score = 28.5 bits (62), Expect = 2.7 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +1 Query: 81 LNYATYGKQPDNSPEYSLFVG 101 L A G+ PDNSP +SLF+G Sbjct: 14914 LAVAHVGRSPDNSPTHSLFLG 14976 >gi|338241608|gb|AFNH01002361.1| Gregarina niphandrodes asmbl.3105, whole genome shotgun sequence Length = 9347 Score = 28.5 bits (62), Expect = 2.7 Identities = 23/74 (31%), Positives = 36/74 (48%) Frame = +1 Query: 16 ENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATP 75 E + AF+ G + +VK++ NR Y FV + A AE L +NG L P Sbjct: 6742 ERQLRAAFSVYG-ALRNVKVVANR------NYSFVTYCYRAAAEFALVAMNGWKLVEDEP 6900 Query: 76 AKRFKLNYATYGKQ 89 ++ + +AT GK+ Sbjct: 6901 SEVLTVRWAT-GKE 6939 >gi|338241434|gb|AFNH01002448.1| Gregarina niphandrodes asmbl.3188, whole genome shotgun sequence Length = 22809 Score = 27.3 bits (59), Expect = 6.0 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +3 Query: 25 TMGETVMSVKIIRNRLTGIPAGYCFVEFADLAT 57 T G S ++I+ R TG+ AG+C A++AT Sbjct: 7170 TSGHCQASYQLIQGRRTGLAAGHCGRAGAEVAT 7268 >gi|338242219|gb|AFNH01002055.1| Gregarina niphandrodes asmbl.2827, whole genome shotgun sequence Length = 12970 Score = 27.3 bits (59), Expect = 6.0 Identities = 14/63 (22%), Positives = 31/63 (49%) Frame = +1 Query: 5 LWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 64 +++G L +M E + +T G + + ++++R GY F E+ D + + + Sbjct: 2494 VFIGGLPHHMMEFEVKELLSTFG-ALKAFHLVKDREADRSKGYAFCEWRDPSVTDAACEQ 2670 Query: 65 ING 67 +NG Sbjct: 2671 LNG 2679 >gi|338240953|gb|AFNH01002690.1| Gregarina niphandrodes asmbl.3411, whole genome shotgun sequence Length = 36292 Score = 26.9 bits (58), Expect = 7.9 Identities = 19/69 (27%), Positives = 31/69 (44%) Frame = -1 Query: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63 +L++G L E + + F G V ++++ + L G P GY FVEF + Sbjct: 36040 TLFVGRLSYETTEKKLLKTFEAYGP-VRDIRVVAD-LEGKPRGYAFVEFKNEEGMWNAYK 35867 Query: 64 KINGKPLPG 72 N K + G Sbjct: 35866 NANQKVIDG 35840 Database: G.niphandrodes/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 15,362,869 Number of sequences in database: 3680 Lambda K H 0.317 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,502,743 Number of Sequences: 3680 Number of extensions: 59616 Number of successful extensions: 319 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 298 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 317 length of query: 287 length of database: 5,120,956 effective HSP length: 94 effective length of query: 193 effective length of database: 4,775,036 effective search space: 921581948 effective search space used: 921581948 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 57 (26.6 bits)