TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|8923460|ref|NP_060316.1| tRNA selenocysteine 1-associated protein 1 [Homo sapiens] (287 letters) Database: D.discoideum_AX4/genome.fa 6 sequences; 33,943,072 total letters Searching......done Score E Sequences producing significant alignments: (bits) Value gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromoso... 71 8e-13 gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromoso... 62 7e-10 gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromoso... 55 8e-08 gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromoso... 50 2e-06 gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromos... 42 5e-04 gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromoso... 40 0.003 >gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromosome 6, whole genome shotgun sequence Length = 3602379 Score = 71.2 bits (173), Expect = 8e-13 Identities = 37/90 (41%), Positives = 57/90 (63%), Gaps = 1/90 (1%) Frame = +2 Query: 83 YATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGF 141 Y Y +P NS + SL++GDL DV D L F YPS R +V++D TG+S+GYGF Sbjct: 229592 YYYYFNKPPNS-DLSLYIGDLATDVTDQQLMNAFQGRYPSVRSARVIMDSATGISRGYGF 229768 Query: 142 VKFTDELEQKRALTECQGAVGLGSKPVRLS 171 VKF ++E+ +AL + G + +KP++++ Sbjct: 229769 VKFASDVEKDKALIDMNGFY-INNKPIKVN 229855 Score = 50.4 bits (119), Expect = 2e-06 Identities = 37/153 (24%), Positives = 70/153 (45%) Frame = +1 Query: 14 MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGA 73 + E + F +G V ++++ R+ T Y +V + + A AE+ L +N P+ G Sbjct: 3042550 VSEQHLFEIFNQVG-LVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTLNNTPIRG- 3042723 Query: 74 TPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQT 133 K ++ ++ S ++F+ +L +D LY+ F + + KVV D Sbjct: 3042724 ---KACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTF-SAFGNILSCKVVTDDG 3042891 Query: 134 GVSKGYGFVKFTDELEQKRALTECQGAVGLGSK 166 SKG+GFV + + +A+ + G + G K Sbjct: 3042892 NSSKGFGFVHYETQESADKAIAKVNGMMINGQK 3042990 Score = 48.5 bits (114), Expect = 6e-06 Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 7/121 (5%) Frame = +2 Query: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63 SL++GDL + + + AF +V S ++I + TGI GY FV+FA +K L Sbjct: 229631 SLYIGDLATDVTDQQLMNAFQGRYPSVRSARVIMDSATGISRGYGFVKFASDVEKDKALI 229810 Query: 64 KING-----KPLPGATPA-KRFKLNYATYGKQPDNSP-EYSLFVGDLTPDVDDGMLYEFF 116 +NG KP+ P KR +T P +++V L +D+G+L + Sbjct: 229811 DMNGFYINNKPIKVNNPTHKRLNSQTSTIPDLTSTDPNNTAIYVSQLDHYIDEGVLQTYC 229990 Query: 117 V 117 + Sbjct: 229991 I 229993 Score = 43.1 bits (100), Expect = 2e-04 Identities = 39/163 (23%), Positives = 63/163 (38%), Gaps = 4/163 (2%) Frame = +2 Query: 1 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEK 60 M+ L++G + +E I F + + SV +I+N+ T P G FV A++ Sbjct: 413873 MSTKLFVGQIPKSFNEEEIKNLFTNIAN-IESVSLIKNKTTNEPQGCAFVSVPSREEADR 414049 Query: 61 CLHKI-NGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVK- 118 + ++ N K G + K Y LFVG L ++ + E F Sbjct: 414050 AIEQLHNSKKFQGVLNNLQVK-----YADSEQEKLASKLFVGMLPRSYEEEQIRELFEPH 414214 Query: 119 --VYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQG 159 V C ++ SKG GF+KF + A+ G Sbjct: 414215 GVVEDIC----ILRGPNSESKGCGFIKFDNRESALSAIATLNG 414331 Score = 43.1 bits (100), Expect = 2e-04 Identities = 43/180 (23%), Positives = 76/180 (42%), Gaps = 4/180 (2%) Frame = +1 Query: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63 ++++ +L+ +D + F+ G ++S K++ + G+ FV + +A+K + Sbjct: 3042784 NVFIKNLDKGIDHKALYDTFSAFGN-ILSCKVVTDDGNS-SKGFGFVHYETQESADKAIA 3042957 Query: 64 KINGKPLPGAT----PAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKV 119 K+NG + G P K K QP ++F +L+ DV L E ++ Sbjct: 3042958 KVNGMMINGQKVFVGPFKSSKER-----GQPTEVKFTNVFFKNLSEDVGPDQLKEL-LQQ 3043119 Query: 120 YPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 179 Y ++ D G SKG+GF F K + G + G KP+ A K R Sbjct: 3043120 YGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIFHG-KPIYAGRAQKKIER 3043296 Score = 42.7 bits (99), Expect = 3e-04 Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 5/148 (3%) Frame = +1 Query: 42 GIPAGYCFVEFADLATAEKCLHKINGK-----PLPGATPAKRFKLNYATYGKQPDNSPEY 96 G G+ F F A+ + NGK P+ K+ + Sbjct: 3043162 GKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGV 3043341 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE 156 +L++ ++ +D+ L E F + + D+ SKG+GFV +T E RA+TE Sbjct: 3043342 NLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTE 3043521 Query: 157 CQGAVGLGSKPVRLSVAIPKASRVKPVE 184 G + +G+KP+ +++A K R +E Sbjct: 3043522 MNGRM-IGTKPLYVALAQRKDIRRAQLE 3043602 Score = 30.4 bits (67), Expect = 1.6 Identities = 17/44 (38%), Positives = 27/44 (61%) Frame = +3 Query: 136 SKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 179 S GYGFVKF+ + E A+ + G + SKP+++S A +S+ Sbjct: 1690185 SLGYGFVKFSKKDEAAMAIEQLNG-FEVDSKPLKVSYAQASSSQ 1690313 Score = 29.3 bits (64), Expect = 3.7 Identities = 19/67 (28%), Positives = 33/67 (49%) Frame = +3 Query: 88 KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDE 147 K+ + L + +L+ D + L++ F K Y + K+VLD+ G SKG F+ + Sbjct: 814665 KEKEKDLPKKLIILNLSFDTAEPDLHKIFDK-YGQIKSLKLVLDKNGKSKGICFILYKSH 814841 Query: 148 LEQKRAL 154 +AL Sbjct: 814842 ESANKAL 814862 >gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromosome 5, whole genome shotgun sequence Length = 5125352 Score = 61.6 bits (148), Expect = 7e-10 Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 6/177 (3%) Frame = +3 Query: 4 SLWMGDLEPYMDENFISRAFATMGET-VMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62 SL++GDL ++E ++ F+ +G + S+ + R+ T GY +V F + AE+ L Sbjct: 4494960 SLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERAL 4495139 Query: 63 HKIN-----GKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFV 117 +N GKP R +Y K+ N ++FV +L VD+ MLY+ F Sbjct: 4495140 DTLNYTLVHGKPC-------RIMWSYRDPTKRKTNVG--NIFVKNLEKGVDNAMLYDTFS 4495292 Query: 118 KVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAI 174 + + KV ++ G+SKGYG+V F ++A+ + G + LG KP+ L + + Sbjct: 4495293 S-FGNILSCKVEFEK-GISKGYGYVHFETNDSAEKAIEKVNGTLILG-KPM*LLILL 4495454 Score = 52.0 bits (123), Expect = 5e-07 Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 23/160 (14%) Frame = +3 Query: 35 IIRNRLTGIPAGYCFVEFADLATAEKCLHK-----------------------INGKPLP 71 I++N G G VEF + A+K L + INGKP+ Sbjct: 4495758 ILKNDANGKSKGLGLVEFKNQEDAQKILTESGALIISTIDGTTTVSSNGGTIEINGKPIT 4495937 Query: 72 GATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD 131 R K + + + + SLF+ ++ +D ++ E F K + + G K+V D Sbjct: 4495938 ----IDRIKSKVERFTEYRKKTTDLSLFINNIDESIDRDLIKEEFAK-HGTIIGIKIVQD 4496102 Query: 132 QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 171 + +KG+GF+ F++ E ++AL G GSK +++S Sbjct: 4496103 ENARNKGFGFISFSEIQEAQKALDSLNGFT-FGSKQIQVS 4496219 Score = 44.7 bits (104), Expect = 8e-05 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 1/123 (0%) Frame = +3 Query: 49 FVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVD 108 ++ F +A A+K ++NGK G K +++ A + K S ++F+G++ + + Sbjct: 3479373 YIVFKQIADAKKAAKQMNGKEAFG----KHLRVDMADH-KPTKASDAKTIFIGNIPYETE 3479537 Query: 109 DGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 167 + L+ F K + +++ D T + KG+G+V F+ + A+ Q ++ G + Sbjct: 3479538 EEELFLIFDKTFGDVVSVRIIRDSHTNIGKGFGYVNFSTDETASTAI--AQKSIQFGKRE 3479711 Query: 168 VRL 170 +R+ Sbjct: 3479712 IRI 3479720 Score = 44.7 bits (104), Expect = 8e-05 Identities = 26/80 (32%), Positives = 44/80 (55%) Frame = +1 Query: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63 +L++ +L D++ + R F+ G + SVKI+R++ T + GY FV LA + ++ Sbjct: 3939823 NLYVYNLPSDADDSLLYRLFSPCG-AIASVKIVRDQTTQVCRGYGFVRMVSLADSYSAIN 3939999 Query: 64 KINGKPLPGATPAKRFKLNY 83 ING + G T + FK Y Sbjct: 3940000 SINGVQVGGKTISVSFKK*Y 3940059 Score = 43.1 bits (100), Expect = 2e-04 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 1/86 (1%) Frame = +1 Query: 87 GKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTG-VSKGYGFVKFT 145 GK P P +L+V +L D DD +LY F + K+V DQT V +GYGFV+ Sbjct: 3939796 GKNPGTDPT-NLYVYNLPSDADDSLLYRLFSPC-GAIASVKIVRDQTTQVCRGYGFVRMV 3939969 Query: 146 DELEQKRALTECQGAVGLGSKPVRLS 171 + A+ G V +G K + +S Sbjct: 3939970 SLADSYSAINSING-VQVGGKTISVS 3940044 Score = 41.6 bits (96), Expect = 7e-04 Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 29/189 (15%) Frame = +2 Query: 2 AASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKC 61 + +L++ L + + F+ GE + S +++ + TG+ G+ FV+F D+A+A+ Sbjct: 3938876 SGNLFISFLPATYTSDTLRSIFSAFGE-IDSCRVMVDLNTGLSRGFGFVKFKDVASAQYA 3939052 Query: 62 LHKINGKPLPGATPAKRF--------KLNYATYGKQPDNSP------------------- 94 ++ +NG + T RF N + DN+ Sbjct: 3939053 INSMNGAKVENKTLLVRFANSDPNSNNTNNSNNNNDDDNNNNNNNNNSNNNNTNNIDEQK 3939232 Query: 95 -EYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKR 152 ++F+ L + D L E F Y K+++D T S+G G V++ D Sbjct: 3939233 ISNNVFIRGLPIEFDKNQLSELF-SAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAIN 3939409 Query: 153 ALTECQGAV 161 A+ G + Sbjct: 3939410 AVKSLNGFI 3939436 Score = 33.1 bits (74), Expect = 0.25 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 3/95 (3%) Frame = +2 Query: 69 PLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKV--YPSCRGG 126 P P T + + +++ +LF+ L L F SCR Sbjct: 3938798 PPPTTTTTTTTTMTQTSTSTSSNSANSGNLFISFLPATYTSDTLRSIFSAFGEIDSCR-- 3938971 Query: 127 KVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGA 160 V++D TG+S+G+GFVKF D + A+ GA Sbjct: 3938972 -VMVDLNTGLSRGFGFVKFKDVASAQYAINSMNGA 3939073 Score = 30.0 bits (66), Expect = 2.1 Identities = 33/159 (20%), Positives = 68/159 (42%), Gaps = 11/159 (6%) Frame = +1 Query: 29 TVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPL---PGATP-------AKR 78 ++ S +I+ ++ T GY ++++ ++A + ++NGK L +P AK Sbjct: 2658895 SIESCRIVIDKDTNESKGYAYIKYTKTSSAALAIEEMNGKILEMDSSCSPIRVLIAEAKG 2659074 Query: 79 FKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSK 137 K D+ P LFV + + +F K + + +++ ++ T SK Sbjct: 2659075 TKTKPLLSSDPEDHPPNSRLFVVCNKSLTEQELKNKF--KEFGNLENVRLIREKSTNDSK 2659248 Query: 138 GYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK 176 G F+KF+ A+ + P+++ +A PK Sbjct: 2659249 GCAFIKFSKASTAAIAMESINISNTGEEYPLKVFIAQPK 2659365 >gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole genome shotgun sequence Length = 6357299 Score = 54.7 bits (130), Expect = 8e-08 Identities = 28/76 (36%), Positives = 46/76 (60%) Frame = -1 Query: 95 EYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRAL 154 ++ +FVGDL DV + ML + F+K YP+ KV+ D+ G S+G+GFV F+ + A Sbjct: 113357 DFRIFVGDLGNDVTEEMLRQAFLK-YPTFLKAKVIFDKVGKSRGFGFVSFSSSSDYISAF 113181 Query: 155 TECQGAVGLGSKPVRL 170 G +G++P++L Sbjct: 113180 NTMNGKY-IGNRPIKL 113136 Score = 43.1 bits (100), Expect = 2e-04 Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Frame = -3 Query: 30 VMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQ 89 V+ +++++++LTG G+ FV F D + + K+NGK + G K ++ KQ Sbjct: 5605692 VLEIRLMKDKLTGESKGFGFVLFNDRSMCRNVIDKLNGKSIKG----KIIEV------KQ 5605543 Query: 90 PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVL--DQTGVSKGYGFVKFTD 146 +N + LF+G+L D+ F + ++ DQ ++G+ F+++ D Sbjct: 5605542 SEN--KRKLFIGNLPKDLSKEQFISIFNEKTEGIESIDFLMSPDQPNKNRGFAFIEYQD 5605372 Score = 35.0 bits (79), Expect = 0.067 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 5/75 (6%) Frame = -3 Query: 1 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEF-----ADL 55 ++ +L++ LE + + + F G+ ++++KI N G GY FVEF A L Sbjct: 6327948 LSPALYISGLEWWTTDQQLENVFLEFGK-IVTLKIFENENNGKSKGYAFVEFEHIEQAQL 6327772 Query: 56 ATAEKCLHKINGKPL 70 A ++ +INGK + Sbjct: 6327771 AKSKTEKKEINGKEM 6327727 Score = 31.2 bits (69), Expect = 0.96 Identities = 22/69 (31%), Positives = 33/69 (47%) Frame = +2 Query: 93 SPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKR 152 SP L V L P ++ L + F + ++ +TG SK +GFV F ++ + R Sbjct: 731687 SPSNVLGVFGLAPQTEERDLKDEFSRFGKIDHVDLIMDRKTGRSKCFGFVYFENKEDAVR 731866 Query: 153 ALTECQGAV 161 A ECQ V Sbjct: 731867 AKEECQDLV 731893 Score = 31.2 bits (69), Expect = 0.96 Identities = 19/56 (33%), Positives = 26/56 (46%) Frame = +1 Query: 99 FVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRAL 154 F D+ V D L E F K+ V +G +KGYGFVKF + + A+ Sbjct: 2229109 F*SDIARGVTDEQLKEEFSKIGDVLEAVVVKNKHSGETKGYGFVKFYHMADAQHAI 2229276 >gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromosome 1, whole genome shotgun sequence Length = 4923596 Score = 50.4 bits (119), Expect = 2e-06 Identities = 29/82 (35%), Positives = 46/82 (56%) Frame = -2 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE 156 +LF+G+L DVD+ +L++ F + KV+ D+ GVSKG+ F+ F D E A E Sbjct: 676972 NLFIGNLDADVDERILHDTFSRFGTIIFTPKVMRDENGVSKGFAFINF-DSFEASDAAIE 676796 Query: 157 CQGAVGLGSKPVRLSVAIPKAS 178 + L +KP+ ++ A K S Sbjct: 676795 AMNSQFLCNKPISVTYARKKDS 676730 Score = 33.9 bits (76), Expect = 0.15 Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 3/106 (2%) Frame = +1 Query: 79 FKLNYATYGKQPDNS---PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGV 135 F +N K DN E LF+G L +D + F Y +V ++ G Sbjct: 3531160 F*MNKPLQVKYSDNEIEKMERKLFIGMLGTSDEDQIRILF--GNYGIIEDLNIVREKDGK 3531333 Query: 136 SKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRVK 181 KGYGF+K++ E + AL E G L + + V R K Sbjct: 3531334 PKGYGFIKYSTRDESENALREIDGKHTLPGSNLPIIVKFADTERQK 3531471 >gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromosome 2, whole genome shotgun sequence Length = 8484197 Score = 42.0 bits (97), Expect = 5e-04 Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Frame = -2 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALT 155 +LFV L P VDD L++ F + + + +V+ D+ TG +KGYGFVKF E + Sbjct: 4286554 NLFVFHLPPFVDDSYLFQLFSQ-FGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQK 4286378 Query: 156 ECQGAVGLGSK 166 E G +GSK Sbjct: 4286377 EMNG-FRIGSK 4286348 Score = 37.4 bits (85), Expect = 0.013 Identities = 16/64 (25%), Positives = 34/64 (53%) Frame = +3 Query: 9 DLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGK 68 +L ++ + + F+ GE + S+ ++ + TGI GY ++E+ + A K + +N + Sbjct: 7176057 NLSSHISKEILKTKFSVYGE-IQSLVFVKGKETGISEGYAYIEYNNKEDAVKAIDDLNDQ 7176233 Query: 69 PLPG 72 P G Sbjct: 7176234 PFEG 7176245 Score = 36.6 bits (83), Expect = 0.023 Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 2/153 (1%) Frame = +1 Query: 5 LWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 64 +++G L + E + F+ G+ + ++KI+ + + A F+ FAD + + Sbjct: 6113872 VFVGQLPSGVTEYDLKEYFSECGD-ISNIKILNSNPQRVAA---FITFADEKGRDTAI-T 6114036 Query: 65 INGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCR 124 NGK G ++N A ++ ++ VD+ ++ EFF K R Sbjct: 6114037 YNGKDFNGQGS---LRINGANSKPSDGEGEPTTIVCRNIAFTVDETLVKEFFSKCGSISR 6114207 Query: 125 GGKVVLDQTGVSKGYGFVKF--TDELEQKRALT 155 V + +G KG+ FV F D +E+ ALT Sbjct: 6114208 VSLPVYEDSGRLKGFAFVSFDSEDAVEKAIALT 6114306 Score = 30.8 bits (68), Expect = 1.3 Identities = 16/51 (31%), Positives = 30/51 (58%) Frame = -1 Query: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFAD 54 S+++G+++ + I F + G TV + I+ ++ TG P G C+VEF + Sbjct: 7900187 SVYVGNVDYKSTHDQILAYFQSCG-TVNRITILSDKTTGHPKGCCYVEFVN 7900038 >gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromosome 4, whole genome shotgun sequence Length = 5450249 Score = 39.7 bits (91), Expect = 0.003 Identities = 31/139 (22%), Positives = 57/139 (41%), Gaps = 21/139 (15%) Frame = -3 Query: 37 RNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF----------------- 79 +N +P G+ F+EF+ A +C+ K+NG + G + + Sbjct: 2316384 KNPSERLPCGFGFIEFSSKQGAYECIKKLNGSSIDGYEISLKLSDKNETNVQEINKRREL 2316205 Query: 80 ----KLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGV 135 K + + G QP N P + + +L + + + F Y + ++ G Sbjct: 2316204 PENSKQSIKSNGGQP-NKPSSKIIIKNLPFESTIKEIRKLFT-AYGEIQSVRIPKKPNGG 2316031 Query: 136 SKGYGFVKFTDELEQKRAL 154 +G+GFV+F E E K A+ Sbjct: 2316030 HRGFGFVEFLTEEEAKNAM 2315974 Score = 38.1 bits (87), Expect = 0.008 Identities = 28/105 (26%), Positives = 49/105 (46%) Frame = -2 Query: 5 LWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 64 +++G L ++E + F+ GE + ++RN+ TG G+CFV + + + Sbjct: 1422490 IYVGGLNYDLNEGDVIAIFSQYGE-ISECNLVRNKETGRSQGFCFVGYDQQKSTVLAVDN 1422314 Query: 65 INGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDD 109 +NG L G K K+++ K+P + E DLT DD Sbjct: 1422313 LNGINLLG----KTIKVDHVKDYKRPKKNNE------DLTDTDDD 1422209 Score = 35.4 bits (80), Expect = 0.051 Identities = 22/59 (37%), Positives = 30/59 (50%) Frame = -2 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALT 155 +LFV ++ DD L E F P +V T SKG+GFV+F D Q++ LT Sbjct: 1610410 TLFVRNIPYSFDDVKLLETFKDCSPKS-AHVIVNKHTNRSKGFGFVEFDDVANQQKGLT 1610237 Score = 34.3 bits (77), Expect = 0.11 Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 11/167 (6%) Frame = +2 Query: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63 ++++ L + E +S F+ G TV++V++I +++T G +VEF+ +K + Sbjct: 983180 TVFVSKLSQNIVEKDLSDLFSQAG-TVLNVRLITDKVTKRMKGVGYVEFSQKEMVDKAI- 983353 Query: 64 KINGKPLPGAT-------PAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFF 116 ++G L G P K+ + +T + E ++VG + V + + F Sbjct: 983354 ALSGSVLDGQQILVHSIQPEKKVIKSNST----GSSGGESRIYVGYIHLSVAEEQIRVIF 983521 Query: 117 VKVYPSCRGGKV----VLDQTGVSKGYGFVKFTDELEQKRALTECQG 159 G + + + G+SK Y F++F + KRA+TE G Sbjct: 983522 QPY------GDIDFINIHTKPGISK-YAFIQFKTQESAKRAITELNG 983641 Score = 34.3 bits (77), Expect = 0.11 Identities = 16/70 (22%), Positives = 34/70 (48%) Frame = +3 Query: 5 LWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 64 +++G L + E + + G+ + + ++++ TG+ G+ F E+ D + K Sbjct: 4406619 IYVGGLPSNLSEEQVKSLLSAYGK-LKAFNLVKDTNTGVSKGFAFCEYQDSEVTDVACSK 4406795 Query: 65 INGKPLPGAT 74 +NG PL T Sbjct: 4406796 LNGIPLADKT 4406825 Score = 30.4 bits (67), Expect = 1.6 Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 5/92 (5%) Frame = +3 Query: 90 PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCR-----GGKVVLDQTGVSKGYGFVKF 144 P ++VG++ P + D L EFF + G VV Q K + F++F Sbjct: 4406265 PQKKQSRRIYVGNIPPGISDSELMEFFNAAVLAANLNTKPGPPVVFCQINAPKCFAFIEF 4406444 Query: 145 TDELEQKRALTECQGAVGLGSKPVRLSVAIPK 176 E A+ G+ K L + PK Sbjct: 4406445 RSPEEATNAMR----FDGISLKNFTLKIRRPK 4406528 Score = 28.5 bits (62), Expect = 6.2 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 14/92 (15%) Frame = +3 Query: 90 PDNSP--EYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTD 146 P N P E ++VG L ++ + + + + Y + +V D TGVSKG+ F ++ D Sbjct: 4406589 PTNVPDSENKIYVGGLPSNLSEEQV-KSLLSAYGKLKAFNLVKDTNTGVSKGFAFCEYQD 4406765 Query: 147 ELEQKRALTECQG-----------AVGLGSKP 167 A ++ G +GSKP Sbjct: 4406766 SEVTDVACSKLNGIPLADKTLVVQRASIGSKP 4406861 Database: D.discoideum_AX4/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 33,943,072 Number of sequences in database: 6 Lambda K H 0.317 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,506,595 Number of Sequences: 6 Number of extensions: 70555 Number of successful extensions: 226 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 79 Number of HSP's gapped (non-prelim): 205 length of query: 287 length of database: 11,314,357 effective HSP length: 100 effective length of query: 187 effective length of database: 11,313,757 effective search space: 2115672559 effective search space used: 2115672559 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 60 (27.7 bits)