TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|8923460|ref|NP_060316.1| tRNA selenocysteine 1-associated protein 1 [Homo sapiens] (287 letters) Database: C.fasciculata/genome.fa 1089 sequences; 37,048,325 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value Cf_Contig578 | | 1 to 10579 71 9e-13 Cf_Contig1013 | | 1 to 74767 52 6e-07 Cf_Contig1070 | | 1 to 336028 41 0.001 Cf_Contig968 | | 1 to 318049 38 0.011 Cf_Contig1061 | | 1 to 139244 37 0.025 Cf_Contig1026 | | 1 to 92129 37 0.025 Cf_Contig743 | | 1 to 77010 37 0.025 Cf_Contig764 | | 1 to 40652 36 0.032 Cf_Contig857 | | 1 to 61726 34 0.12 Cf_Contig600 | | 1 to 15407 34 0.16 Cf_Contig1018 | | 1 to 165852 33 0.36 Cf_Contig1052 | | 1 to 356154 31 1.0 Cf_Contig564 | | 1 to 17882 30 1.8 Cf_Contig1046 | | 1 to 248163 30 2.3 Cf_Contig1036 | | 1 to 195429 29 4.0 Cf_Contig897 | | 1 to 123972 29 4.0 Cf_Contig1028 | | 1 to 123489 28 6.7 Cf_Contig892 | | 1 to 169734 28 6.7 >Cf_Contig578 | | 1 to 10579 Length = 10579 Score = 71.2 bits (173), Expect = 9e-13 Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 6/164 (3%) Frame = +3 Query: 3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62 AS+++GDL+ ++E + F + G T+++V++ R+ +T GY +V F + AEK + Sbjct: 3405 ASIYVGDLDATINEPQLVELFKSFG-TILNVRVCRDIITQRSLGYGYVNFDNHDDAEKAI 3581 Query: 63 HKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYS----LFVGDLTPDVDDGMLYEFFVK 118 +N K + K +L + +Q D + YS +FV +L +VD L++ F K Sbjct: 3582 EAMNFKRVGD----KCMRLMW----QQRDPALRYSGNGNIFVKNLETEVDSKSLHDIFNK 3737 Query: 119 --VYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGA 160 + SC KV+ D+ G S+GYGFV F DE K A+ + GA Sbjct: 3738 FGLILSC---KVMEDEEGKSRGYGFVHFKDETSAKDAIVKMNGA 3860 Score = 49.7 bits (117), Expect = 3e-06 Identities = 27/77 (35%), Positives = 46/77 (59%) Frame = +3 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE 156 +L+V + P+ D L E F K Y + + +V++ ++G S+G+GFV F+D E AL E Sbjct: 4254 NLYVRNFDPEFTDADLLELF-KEYGNVKSCRVMMSESGASRGFGFVSFSDADEANAALRE 4430 Query: 157 CQGAVGLGSKPVRLSVA 173 G + L KP+ +++A Sbjct: 4431 MNGRM-LNGKPLIVNIA 4478 Score = 29.3 bits (64), Expect = 4.0 Identities = 18/69 (26%), Positives = 35/69 (50%) Frame = +3 Query: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63 +L++ + +P + + F G V S +++ + +G G+ FV F+D A L Sbjct: 4254 NLYVRNFDPEFTDADLLELFKEYGN-VKSCRVMMSE-SGASRGFGFVSFSDADEANAALR 4427 Query: 64 KINGKPLPG 72 ++NG+ L G Sbjct: 4428 EMNGRMLNG 4454 >Cf_Contig1013 | | 1 to 74767 Length = 74767 Score = 52.0 bits (123), Expect = 6e-07 Identities = 48/158 (30%), Positives = 69/158 (43%), Gaps = 2/158 (1%) Frame = +3 Query: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63 S+W+G L+P ++E + F +G V SV++ + T GY +V F D + AEK L Sbjct: 65757 SIWVGGLDPELNEQKLYDYFVRIG-PVASVRVCVDSATQKSLGYGYVNFQDPSDAEKALD 65933 Query: 64 KINGKPLPGATPAKRFKLNYATYGKQPD--NSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121 + GA RF L A + P S ++ V L VD L E F K Y Sbjct: 65934 Q------AGAKLGTRF-LRIAKIQRDPSKRRSGVNNILVKKLPKSVDTFALKEMFGK-YG 66089 Query: 122 SCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQG 159 + D+ G S+GY + F E A+ E G Sbjct: 66090 RLTAIGLACDERGESRGYARISFEREESAVDAVKEMDG 66203 Score = 48.1 bits (113), Expect = 8e-06 Identities = 26/80 (32%), Positives = 46/80 (57%) Frame = +3 Query: 92 NSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQK 151 + P S++VG L P++++ LY++FV++ P V T S GYG+V F D + + Sbjct: 65742 SGPNPSIWVGGLDPELNEQKLYDYFVRIGPVASVRVCVDSATQKSLGYGYVNFQDPSDAE 65921 Query: 152 RALTECQGAVGLGSKPVRLS 171 +AL Q LG++ +R++ Sbjct: 65922 KALD--QAGAKLGTRFLRIA 65975 >Cf_Contig1070 | | 1 to 336028 Length = 336028 Score = 40.8 bits (94), Expect = 0.001 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Frame = +3 Query: 72 GATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD 131 G K+ K + + D +LFV L ++ D L F + +PS K++LD Sbjct: 282348 GNNTPKKHKKVFTVVNR*RDIMSLQNLFVAKLPRNIGDADLLHIFSEFHPS--SAKIMLD 282521 Query: 132 -QTGVSKGYGFVKFTDELEQKRA 153 TG SKG+GFV F +E ++A Sbjct: 282522 ASTGKSKGFGFVLFDEESNGEKA 282590 Score = 39.3 bits (90), Expect = 0.004 Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 1/58 (1%) Frame = +2 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQT-GVSKGYGFVKFTDELEQKRA 153 +LFV L ++ D L + FV +PS KV+LD T G SKG+GFV F E ++A Sbjct: 288713 NLFVAKLPRNLTDADLEQIFVDYHPS--SAKVMLDATTGKSKGFGFVLFESEDAGRKA 288880 >Cf_Contig968 | | 1 to 318049 Length = 318049 Score = 37.7 bits (86), Expect = 0.011 Identities = 30/114 (26%), Positives = 54/114 (47%) Frame = +2 Query: 3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62 ++L++ L + ++ +S F G + S K++ + +G G FV+F+D+ AE + Sbjct: 174950 SNLFVCGLPISITDSDLSELFGKFGP-IESAKVMLDIHSGRSRGIAFVKFSDVEHAENAV 175126 Query: 63 HKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFF 116 +NG + G + R + A Y P N P FV ++ P V L +F Sbjct: 175127 DSLNGTAVSGHLISVRVANSRAAY--LPGN-PTNKTFVRNVPPTVPRSTLMSYF 175279 Score = 34.3 bits (77), Expect = 0.12 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Frame = +2 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALT 155 +LFV L + D L E F K P KV+LD +G S+G FVKF+D + A+ Sbjct: 174953 NLFVCGLPISITDSDLSELFGKFGP-IESAKVMLDIHSGRSRGIAFVKFSDVEHAENAVD 175129 Query: 156 ECQGAVGLG 164 G G Sbjct: 175130 SLNGTAVSG 175156 >Cf_Contig1061 | | 1 to 139244 Length = 139244 Score = 36.6 bits (83), Expect = 0.025 Identities = 28/95 (29%), Positives = 46/95 (48%) Frame = +2 Query: 82 NYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGF 141 N G Q N+P + FVG +T + + L + F K Y S K+ + G S GYG+ Sbjct: 71678 NNKNSG*QMQNNPPHRFFVGGITRTLCEDDLVDHF-KKYGSGLRAKISCNDKGKSFGYGW 71854 Query: 142 VKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK 176 + F + +++R L + G VR+ V +P+ Sbjct: 71855 LSF-EATDRERVLKDTHFIKG-----VRVRVGLPE 71941 >Cf_Contig1026 | | 1 to 92129 Length = 92129 Score = 36.6 bits (83), Expect = 0.025 Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = +1 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALT 155 +LFV L +VDD L E F VY + V+ D +G S G FV+F+ E RAL Sbjct: 6184 NLFVRYLPREVDDNRLREIF-SVYGAITSSMVMRDIHSGRSLGTAFVRFSQHHEAFRALC 6360 Query: 156 ECQG 159 E G Sbjct: 6361 EAHG 6372 Score = 35.4 bits (80), Expect = 0.055 Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Frame = +2 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALT 155 +LFV L +VDD L E F VY + V+ D +G S G FV+F E RA Sbjct: 1559 NLFVRYLPREVDDNRLREIF-SVYGTVTSSMVMRDIHSGQSMGNAFVRFATHEEAVRAFQ 1735 Query: 156 ECQG 159 E G Sbjct: 1736 EAHG 1747 >Cf_Contig743 | | 1 to 77010 Length = 77010 Score = 36.6 bits (83), Expect = 0.025 Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Frame = +2 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALT 155 +L V L P +++ +YE F + + K++ D+ TG S+GYGFVK+ A++ Sbjct: 71552 NLIVNYLPPLMNEAQVYELFGQ-FGKIESVKIIYDKITGESRGYGFVKYQFFFSATYAVS 71728 Query: 156 ECQGAVGLGSKPVRLSVAIPKASR 179 C +G K ++++ A A++ Sbjct: 71729 -CLNRFEIGGKKLKVAYANAPAAK 71797 Score = 34.7 bits (78), Expect = 0.094 Identities = 24/75 (32%), Positives = 39/75 (52%) Frame = +2 Query: 10 LEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKP 69 L P M+E + F G+ + SVKII +++TG GY FV++ +A + +N Sbjct: 71570 LPPLMNEAQVYELFGQFGK-IESVKIIYDKITGESRGYGFVKYQFFFSATYAVSCLNRFE 71746 Query: 70 LPGATPAKRFKLNYA 84 + G K+ K+ YA Sbjct: 71747 IGG----KKLKVAYA 71779 >Cf_Contig764 | | 1 to 40652 Length = 40652 Score = 36.2 bits (82), Expect = 0.032 Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 8/100 (8%) Frame = +2 Query: 14 MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKING------ 67 +DE + + F G + SVKI+ +R T GY FV++ A+A++ ++++NG Sbjct: 35 VDEMQLRQLFERFGP-IESVKIVCDRETRQSRGYGFVKYQSAASAQQAVNELNGFNILNK 211 Query: 68 --KPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTP 105 K A+ +R + NY +P+ + + G+ P Sbjct: 212 RLKVALAASGNQRPRNNYNQQQSAQGAAPQANYYPGNFAP 331 Score = 35.4 bits (80), Expect = 0.055 Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 9/101 (8%) Frame = +3 Query: 14 MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKING------ 67 +DE + + F G + SVKI+ +R T GY FV++ A+A++ ++++NG Sbjct: 3432 VDEMQLRQLFERFGP-IESVKIVCDRDTRQSRGYGFVKYQSAASAQQAVNELNGFNILNK 3608 Query: 68 --KPLPGATPAKRFKLNYATYGKQPDN-SPEYSLFVGDLTP 105 K A+ +R + NY + P +P+ + + G+ P Sbjct: 3609 RLKVALAASGNQRPRNNYNNQQQFPQGAAPQANYYPGNFAP 3731 Score = 34.7 bits (78), Expect = 0.094 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 1/87 (1%) Frame = +2 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALT 155 ++ V + VD+ L + F + P K+V D +T S+GYGFVK+ ++A+ Sbjct: 5 NVMVNYIPTTVDEMQLRQLFERFGP-IESVKIVCDRETRQSRGYGFVKYQSAASAQQAVN 181 Query: 156 ECQGAVGLGSKPVRLSVAIPKASRVKP 182 E G L RL VA+ + +P Sbjct: 182 ELNGFNILNK---RLKVALAASGNQRP 253 Score = 34.7 bits (78), Expect = 0.094 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 1/94 (1%) Frame = +3 Query: 90 PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDEL 148 P+ ++ V + VD+ L + F + P K+V D+ T S+GYGFVK+ Sbjct: 3381 PEPEALRNVMVNYIPTTVDEMQLRQLFERFGP-IESVKIVCDRDTRQSRGYGFVKYQSAA 3557 Query: 149 EQKRALTECQGAVGLGSKPVRLSVAIPKASRVKP 182 ++A+ E G L RL VA+ + +P Sbjct: 3558 SAQQAVNELNGFNILNK---RLKVALAASGNQRP 3650 >Cf_Contig857 | | 1 to 61726 Length = 61726 Score = 34.3 bits (77), Expect = 0.12 Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 2/53 (3%) Frame = +1 Query: 94 PEYSLFVGDLTPDVDDGMLYEFFVKV-YPSCRGGKVVLD-QTGVSKGYGFVKF 144 PE S+F+G++ D + ++ FF + P + ++V D +TG KG+G+V+F Sbjct: 1750 PETSIFLGNVAYDTTEEHVWNFFQEHGVPDVKRVRLVRDRETGACKGFGYVEF 1908 >Cf_Contig600 | | 1 to 15407 Length = 15407 Score = 33.9 bits (76), Expect = 0.16 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 3/73 (4%) Frame = +1 Query: 90 PDNSPEY--SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTD 146 P N Y L V L +V ++ F + P G +++ D QT +S+GYGFV F Sbjct: 11842 PSNDERYRKQLIVNYLAQNVTSADIHTLFSRFGP-LDGARIIFDRQTSMSRGYGFVYFRH 12018 Query: 147 ELEQKRALTECQG 159 K+A+ G Sbjct: 12019 PESAKQAVDMMNG 12057 >Cf_Contig1018 | | 1 to 165852 Length = 165852 Score = 32.7 bits (73), Expect = 0.36 Identities = 19/69 (27%), Positives = 33/69 (47%) Frame = -1 Query: 2 AASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKC 61 + ++++G+L Y E + FA G + + + N T P G+CFV + A A Sbjct: 112686 STTVYVGNLSFYTTEEQLYDHFAPCGH-IRDIVMGLNEATRCPCGFCFVVYESQAAAVIA 112510 Query: 62 LHKINGKPL 70 + +NG L Sbjct: 112509 VQGLNGSLL 112483 >Cf_Contig1052 | | 1 to 356154 Length = 356154 Score = 31.2 bits (69), Expect = 1.0 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Frame = -3 Query: 7 MGDLEP-YMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKI 65 M +L P +DE+ R FA V++V+I+R+ TG Y FVEF A + L Sbjct: 30574 MANLHPDTVDEDL--RHFADQFGRVVNVRIVRHVKTGKSRRYAFVEFGLAGEARRALQFH 30401 Query: 66 NGKPLPG 72 K L G Sbjct: 30400 RKKRLKG 30380 >Cf_Contig564 | | 1 to 17882 Length = 17882 Score = 30.4 bits (67), Expect = 1.8 Identities = 20/74 (27%), Positives = 34/74 (45%) Frame = -2 Query: 93 SPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKR 152 S +++V L + DD L+ F + ++ +SKGYGFV F + ++ Sbjct: 11266 SQNRNVYVASLPLNFDDQQLHNLFSPFGRIISARIMRAKKSHLSKGYGFVMFREASGAEQ 11087 Query: 153 ALTECQGAVGLGSK 166 A+ G V GS+ Sbjct: 11086 AIQALHGRVIGGSR 11045 >Cf_Contig1046 | | 1 to 248163 Length = 248163 Score = 30.0 bits (66), Expect = 2.3 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +3 Query: 69 PLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDG 110 P TPA +L +A Y ++PDN P + V + P DG Sbjct: 51981 PASAITPADEAELVFAYYPRRPDNPPAWEDDVMESLPPAVDG 52106 >Cf_Contig1036 | | 1 to 195429 Length = 195429 Score = 29.3 bits (64), Expect = 4.0 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +2 Query: 120 YPSCRGGKVVLDQTGVSKGYGFVKFTD 146 Y R K++ D GVS+GYGF+++ + Sbjct: 66995 YGPIRNVKLLKDTAGVSRGYGFIEYVN 67075 >Cf_Contig897 | | 1 to 123972 Length = 123972 Score = 29.3 bits (64), Expect = 4.0 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = -2 Query: 120 YPSCRGGKVVLDQTGVSKGYGFVKFTD 146 Y R K++ D GVS+GYGF+++ + Sbjct: 99692 YGPIRNVKLLKDTAGVSRGYGFIEYVN 99612 >Cf_Contig1028 | | 1 to 123489 Length = 123489 Score = 28.5 bits (62), Expect = 6.7 Identities = 16/41 (39%), Positives = 25/41 (60%) Frame = +1 Query: 133 TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 173 T +KG FV+F + RAL C+GA+ +G + +R+S A Sbjct: 97627 TRQNKGAAFVRFAAAADAVRALQLCRGAILMG-RLLRVSAA 97746 >Cf_Contig892 | | 1 to 169734 Length = 169734 Score = 28.5 bits (62), Expect = 6.7 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -1 Query: 150 QKRALTECQGAVGLGSKPVRL 170 ++R T C GAVG GS+P RL Sbjct: 115200 RRRRRTRCGGAVGRGSEPARL 115138 Database: C.fasciculata/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 37,048,325 Number of sequences in database: 1089 Lambda K H 0.317 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,688,794 Number of Sequences: 1089 Number of extensions: 116163 Number of successful extensions: 482 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 14 Number of HSP's that attempted gapping in prelim test: 397 Number of HSP's gapped (non-prelim): 128 length of query: 287 length of database: 12,349,441 effective HSP length: 100 effective length of query: 187 effective length of database: 12,240,541 effective search space: 2288981167 effective search space used: 2288981167 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 61 (28.1 bits)