TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|224465209|ref|NP_699167.2| L-seryl-tRNA(Sec) kinase [Homo
sapiens]
         (348 letters)

Database: T.congolense/genome.fa 
           11 sequences; 22,287,946 total letters

Searching...........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

TcIL3000_10_v2.embl                                                    31   0.84 
T.congo.pschr.11                                                       30   2.4  

>TcIL3000_10_v2.embl
          Length = 3612457

 Score = 31.2 bits (69), Expect = 0.84
 Identities = 48/203 (23%), Positives = 75/203 (36%), Gaps = 20/203 (9%)
 Frame = +3

Query: 20      LCVLCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYDDVMPDAFLAGARARPAPSQWKLL 79
               L +L GLP AGKST ARAL  R +   G    +     V  D F+  A A        L+
Sbjct: 2047035 LVLLTGLPGAGKSTLARAL-QRQRSVAGEPSRLSIEAVVELDDFIIAAGAVEDGGSDTLV 2047211

Query: 80      RQELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKDQDLIFSAAFEAQSCYLLTK 139
               +  L                       T   W +    ++ +  I     E + C  + +
Sbjct: 2047212 KSTLF----------------------TPQRWRE--AYVESRSAIHR---ELRRCLTVDE 2047310

Query: 140     TAVSRPLFLVLDDNFYYQSMRYEVYQLARKYS-----------------LGFCQLFLDCP 182
                +  R   +   D   Y+SMR   ++L  + S                 +   ++ L+ P
Sbjct: 2047311 GSNGRLRLVFFVDPLPYRSMRESYWKLCNEVSRECGELRCVQAPERLNRVLMLEVRLNTP 2047490

Query: 183     LETCLQRNGQR---PQALPPETI 202
               ++ CL+RN  R   PQ +PP  I
Sbjct: 2047491 VDVCLRRNEFRSGTPQYVPPYVI 2047559



 Score = 29.3 bits (64), Expect = 3.2
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +2

Query: 187     LQRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSP 229
               L+  G+RP+ +P + + ++G K    +  K    HN + + +P
Sbjct: 2934968 LKEGGKRPRGIPEDVLLVLGAKTAAAHQSKTLAPHNLVILSTP 2935096



 Score = 29.3 bits (64), Expect = 3.2
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +2

Query: 187     LQRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSP 229
               L+  G+RP+ +P + + ++G K    +  K    HN + + +P
Sbjct: 2941589 LKEGGKRPRGIPEDVLLVLGAKTAAAHQSKTLAPHNLVILSTP 2941717



 Score = 28.5 bits (62), Expect = 5.4
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -1

Query: 23      LCGLPAAGKSTFARALA 39
               LCGLP  GKST +R +A
Sbjct: 1794169 LCGLPGVGKSTLSRTIA 1794119


>T.congo.pschr.11
          Length = 4797796

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = -1

Query: 10      TGSDGPRKRGLCVLCGLPAAGKSTFARAL 38
               +GS  PR RGL   CG PA G + F  AL
Sbjct: 3199648 SGSTPPRIRGLHNKCGCPAGGSAAFDFAL 3199562



 Score = 28.9 bits (63), Expect = 4.2
 Identities = 13/61 (21%), Positives = 29/61 (47%)
 Frame = -3

Query: 212    PNPEKNAWEHNSLTIPSPACASEASLEVTDLLLTALENPVKYAEDNMEQKDTDRIICSTN 271
              P+P K    +  L  P+P    ++S   T  L+  L+ PV      + ++D  +++ + +
Sbjct: 551333 PHPPKKTTRNGVLKFPAPTTTHDSST*NTTFLVARLKTPVMTLGAYLHRRDRSKVLQTEH 551154

Query: 272    I 272
              +
Sbjct: 551153 V 551151



 Score = 28.5 bits (62), Expect = 5.4
 Identities = 30/130 (23%), Positives = 43/130 (33%), Gaps = 26/130 (20%)
 Frame = +3

Query: 125     FSAAFEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARKYSL--------GFCQ 176
               F   FEA  C +L    V  P+FL     FY+Q+   + +Q               G+  
Sbjct: 2638833 FPPCFEALVCSMLFPVCVVLPVFLFFMILFYFQTSAEQYFQYRTAVKCKEGNNGGGGYSG 2639012

Query: 177     LFLDC------------------PLETCLQRNGQRPQALPPETIHLMGRKLEKPNPEKNA 218
                F+ C                  PL T   R   R   +P     L+  K  +    + A
Sbjct: 2639013 EFISCSCSLTGTAWMSQLRRRFVPLLTQNSRRSSRSGGVPSRA*ALVRDKGGRRVTSRVA 2639192

Query: 219     WEHNSLTIPS 228
               W H +L   S
Sbjct: 2639193 WSHCALRASS 2639222



 Score = 27.7 bits (60), Expect = 9.3
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -1

Query: 300     EMTFKQRWVRANHAAIWRIILGNEHIKCRSAKVGWLQCCRIEKR 343
               + T  QRW   +  AI R         C S   GW++CC I  R
Sbjct: 2031436 DRTMAQRWRSWSRCAIGR---------CMSGVHGWVRCCWIRAR 2031332


  Database: T.congolense/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 22,287,946
  Number of sequences in database:  11
  
Lambda     K      H
   0.321    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,009,453
Number of Sequences: 11
Number of extensions: 182907
Number of successful extensions: 1006
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 701
Number of HSP's gapped (non-prelim): 596
length of query: 348
length of database: 7,429,315
effective HSP length: 99
effective length of query: 249
effective length of database: 7,428,226
effective search space: 1849628274
effective search space used: 1849628274
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)