TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|224465209|ref|NP_699167.2| L-seryl-tRNA(Sec) kinase [Homo
sapiens]
         (348 letters)

Database: S.arctica/genome.fa 
           15,618 sequences; 121,588,341 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.4674 of Sphaeroforma arctica JP610                          53   1e-06
supercont1.7355 of Sphaeroforma arctica JP610                          31   5.5  
supercont1.628 of Sphaeroforma arctica JP610                           31   5.5  
supercont1.5355 of Sphaeroforma arctica JP610                          30   7.2  

>supercont1.4674 of Sphaeroforma arctica JP610
          Length = 2338

 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 22/51 (43%), Positives = 37/51 (72%)
 Frame = +2

Query: 143  SRPLFLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLDCPLETCLQRNGQR 193
            +R   +++DDNFYY+SMR E+YQLA   S+G+ Q+++ C  E  ++R+ +R
Sbjct: 1205 TRLRMILIDDNFYYRSMRKEIYQLADIMSIGYVQVWIVCDTEVAVRRDARR 1357


>supercont1.7355 of Sphaeroforma arctica JP610
          Length = 1448

 Score = 30.8 bits (68), Expect = 5.5
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +3

Query: 174 FCQLFLDCPLETCLQRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTI 226
           F  LF+D  L  C+  +   P +LPP ++    R  + P P   A E  + T+
Sbjct: 669 FIHLFIDIYL*NCIPLSHNSPTSLPPRSVDSHPRHFQ*PTPYPGATEIIAFTM 827


>supercont1.628 of Sphaeroforma arctica JP610
          Length = 54644

 Score = 30.8 bits (68), Expect = 5.5
 Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 1/129 (0%)
 Frame = +3

Query: 201  TIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASEASLEVTDLLLTALENPVKYAEDNMEQ 260
            T+H  GR L+      N   H          A   ++ V+ + LT  + P +YA      
Sbjct: 1509 TVHGKGRSLDVCGEFINRGSH----------ADSVTVVVSPV*LTVDQGPSEYALLRY*Y 1658

Query: 261  KDTDRIICSTNILHKTDQTLRRIVSQTMKEAKG-NQEAFSEMTFKQRWVRANHAAIWRII 319
            K + + + S    H T+ + R IV +  ++  G   +  +     Q+WV+ +   + R +
Sbjct: 1659 KQSGKSLISG--AHWTEASTRMIVKEFEQKHVGCYHDTKTTGVCPQQWVKLS*EGLSRSV 1832

Query: 320  LGNEHIKCR 328
            +GN H+  R
Sbjct: 1833 MGNSHLISR 1859


>supercont1.5355 of Sphaeroforma arctica JP610
          Length = 2002

 Score = 30.4 bits (67), Expect = 7.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 192 QRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLT 225
           +RPQ+ PP   HL+ + + +P P+K   E + +T
Sbjct: 235 KRPQSQPPVPEHLLTKVVGRPRPDKTLHEMDDIT 336


  Database: S.arctica/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 121,588,341
  Number of sequences in database:  15,618
  
Lambda     K      H
   0.321    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,443,077
Number of Sequences: 15618
Number of extensions: 847481
Number of successful extensions: 3752
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1416
Number of HSP's successfully gapped in prelim test: 180
Number of HSP's that attempted gapping in prelim test: 1841
Number of HSP's gapped (non-prelim): 2529
length of query: 348
length of database: 40,529,447
effective HSP length: 110
effective length of query: 238
effective length of database: 38,811,467
effective search space: 9237129146
effective search space used: 9237129146
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)