TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|224465209|ref|NP_699167.2| L-seryl-tRNA(Sec) kinase [Homo sapiens] (348 letters) Database: P.capsici/genome.fa 917 sequences; 64,023,748 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PHYCAscaffold_17 44 2e-10 PHYCAscaffold_11 34 0.28 PHYCAscaffold_55 34 0.36 PHYCAscaffold_21 32 1.8 PHYCAscaffold_76 31 3.1 PHYCAscaffold_20 30 4.0 PHYCAscaffold_12 30 4.0 PHYCAscaffold_86 30 5.2 PHYCAscaffold_34 30 6.8 PHYCAscaffold_140 29 8.9 PHYCAscaffold_61 29 8.9 PHYCAscaffold_40 29 8.9 PHYCAscaffold_31 29 8.9 >PHYCAscaffold_17 Length = 985188 Score = 44.3 bits (103), Expect(2) = 2e-10 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 3/88 (3%) Frame = +2 Query: 168 RKYSLGFCQLFLDCPLETCLQRNGQR--PQALPPETIHLMGRKLEKPNPEKNAWEHNSLT 225 R + GF L++D PL+ C +RN R + +P E M E PN +N+WE N+ Sbjct: 95027 RAVNCGFGVLYVDVPLDICRERNAGRNKREQVPSEVFERMAAAFEPPNGRQNSWEVNTRQ 95206 Query: 226 IPSPACASEASL-EVTDLLLTALENPVK 252 A +A++ EV + L+ E +K Sbjct: 95207 FTG---ARDANIDEVVNALVLQAEQELK 95281 Score = 39.7 bits (91), Expect(2) = 2e-10 Identities = 35/151 (23%), Positives = 57/151 (37%), Gaps = 1/151 (0%) Frame = +1 Query: 20 LCVLCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYDDVMPDAFLA-GARARPAPSQWKL 78 L ++CGLP AGK+T + L +++DD+ A G P +WK+ Sbjct: 94639 LVLVCGLPGAGKTTLVKQLVATACSISSRLHERISFDDLYEQHVTAEGKPGEFDPEKWKM 94818 Query: 79 LRQELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKDQDLIFSAAFEAQSCYLLT 138 +Q++LK + L + + P +R E Sbjct: 94819 CQQDMLKRVSNRLK------EQNDPVHRNEC----------------------------- 94893 Query: 139 KTAVSRPLFLVLDDNFYYQSMRYEVYQLARK 169 L L++DDNF Y+S+R + L K Sbjct: 94894 -----NQLVLLVDDNFQYRSLRKRFFHLTAK 94971 >PHYCAscaffold_11 Length = 1076090 Score = 34.3 bits (77), Expect = 0.28 Identities = 14/23 (60%), Positives = 19/23 (82%) Frame = +1 Query: 20 LCVLCGLPAAGKSTFARALAHRL 42 L VLCG+P +GKS+F RAL+ R+ Sbjct: 677938 LLVLCGIPGSGKSSFRRALSKRI 678006 >PHYCAscaffold_55 Length = 463907 Score = 33.9 bits (76), Expect = 0.36 Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 4/61 (6%) Frame = -2 Query: 20 LCVLCGLPAAGKSTFARALAHRLQ-QEQGWAIGVVAYDDVMPDAF--LAGARARP-APSQ 75 L V+CG+PAAGK+T A AL LQ Q G + +A V D AG + P A Q Sbjct: 368101 LIVVCGIPAAGKTTVATALVSHLQCQLPGEQVVYIAPATVNVDKTRGYAGKKTFPMAGGQ 367922 Query: 76 W 76 W Sbjct: 367921 W 367919 >PHYCAscaffold_21 Length = 930814 Score = 31.6 bits (70), Expect = 1.8 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Frame = +3 Query: 170 YSLGFCQ---LFLDCPLETCLQRNGQRPQALPPETIHLMGRKLE---KPNPEKNAWEHNS 223 Y++ C L L CP CL+R QR L+ +LE P+ + W + Sbjct: 515403 YTVSRCSSPTLALTCPRSCCLRRCSQRQSGRRVTVSRLLPARLELRLAPSVSPSGWTTRA 515582 Query: 224 LTIPSPACASEAS 236 P+P+ S+ S Sbjct: 515583 TATPAPSTRSQPS 515621 >PHYCAscaffold_76 Length = 209683 Score = 30.8 bits (68), Expect = 3.1 Identities = 15/43 (34%), Positives = 19/43 (44%) Frame = +3 Query: 181 CPLETCLQRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNS 223 C +TCLQ NG A + G LE+P+P W S Sbjct: 172557 CS*QTCLQYNGNETAARRRRFASMSGLALERPSPTHYDWRGTS 172685 >PHYCAscaffold_20 Length = 899172 Score = 30.4 bits (67), Expect = 4.0 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = +1 Query: 115 ITCLKDQDLIFSAAFEAQSCYLLTKTAVSRPLFLVL 150 +TCL ++ S +F+ CYLL+ A+S P F +L Sbjct: 735649 LTCLNRMLILRSRSFKNSLCYLLSAPALSYPAFSLL 735756 >PHYCAscaffold_12 Length = 1145657 Score = 30.4 bits (67), Expect = 4.0 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = +1 Query: 115 ITCLKDQDLIFSAAFEAQSCYLLTKTAVSRPLFLVL 150 +TCL ++ S +F+ CYLL+ A+S P F +L Sbjct: 550975 LTCLNRMLILRSRSFKNSLCYLLSTPALSYPAFSLL 551082 >PHYCAscaffold_86 Length = 162230 Score = 30.0 bits (66), Expect = 5.2 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -1 Query: 20 LCVLCGLPAAGKSTFARALAHRLQQEQGWAIG 51 + +L P AGKSTF +ALA +LQ IG Sbjct: 144569 MTLLLANPGAGKSTFLKALAGKLQNNSKTEIG 144474 >PHYCAscaffold_34 Length = 622686 Score = 29.6 bits (65), Expect = 6.8 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%) Frame = -2 Query: 14 GPRKRGLCVLCGLPAAGKSTFARALAHRL-----QQEQGWAIGVVAYDDVM 59 G ++ L LCG P +GKST R +A +L + E A G + Y+ ++ Sbjct: 555014 GVFQKRLLFLCGPPGSGKSTAVRCIARKLGLLIKEWEDNSAAGKLHYERML 554862 >PHYCAscaffold_140 Length = 50072 Score = 29.3 bits (64), Expect = 8.9 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = +2 Query: 115 ITCLKDQDLIFSAAFEAQSCYLLTKTAVSRPLFLVL 150 +TCL ++ S +F+ CYLL A+S P F +L Sbjct: 809 LTCLNRMLILRSRSFKNSLCYLLWTPALSYPAFSLL 916 >PHYCAscaffold_61 Length = 347729 Score = 29.3 bits (64), Expect = 8.9 Identities = 14/25 (56%), Positives = 16/25 (64%) Frame = +3 Query: 27 PAAGKSTFARALAHRLQQEQGWAIG 51 P AGKSTF +ALA +LQ IG Sbjct: 16488 PGAGKSTFLKALAGKLQDNSKTEIG 16562 Score = 29.3 bits (64), Expect = 8.9 Identities = 14/25 (56%), Positives = 16/25 (64%) Frame = -1 Query: 27 PAAGKSTFARALAHRLQQEQGWAIG 51 P AGKSTF +ALA +LQ IG Sbjct: 12947 PGAGKSTFLKALAGKLQDNSKTEIG 12873 >PHYCAscaffold_40 Length = 570383 Score = 29.3 bits (64), Expect = 8.9 Identities = 19/55 (34%), Positives = 30/55 (54%) Frame = -2 Query: 3 TAENIRGTGSDGPRKRGLCVLCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYDD 57 TA+ ++ + S+ + + V+CG GKSTF R L +RL + G VA+ D Sbjct: 355900 TADRLQSSLSENAASQKI-VVCGGKGVGKSTFCRFLVNRLLAK----FGTVAFLD 355751 >PHYCAscaffold_31 Length = 686815 Score = 29.3 bits (64), Expect = 8.9 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 7/93 (7%) Frame = -3 Query: 233 SEASLEVTDLLLTALENPVKYAEDNMEQK---DTDRIICSTNILHKTDQTLRRIVSQTMK 289 S+ L D +LTA++ +A E + D++I D+T R S+T+K Sbjct: 270941 SDHKLVTADFVLTAVQRLRFHARKPSEHRLRLSRDKLI--------NDETTRAFYSETLK 270786 Query: 290 EAKGNQEAFSEMTFKQRWVR----ANHAAIWRI 318 +A + E+ Q+W +HAA + I Sbjct: 270785 QAVADAPPEPEVPIHQQWKATLDLVHHAAAYTI 270687 Database: P.capsici/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 64,023,748 Number of sequences in database: 917 Lambda K H 0.321 0.134 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,386,523 Number of Sequences: 917 Number of extensions: 521274 Number of successful extensions: 2852 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 85 Number of HSP's successfully gapped in prelim test: 54 Number of HSP's that attempted gapping in prelim test: 2071 Number of HSP's gapped (non-prelim): 1701 length of query: 348 length of database: 21,341,249 effective HSP length: 106 effective length of query: 242 effective length of database: 21,244,047 effective search space: 5141059374 effective search space used: 5141059374 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 64 (29.3 bits)