TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|224465209|ref|NP_699167.2| L-seryl-tRNA(Sec) kinase [Homo sapiens] (348 letters) Database: L.donovani_BPK282A1/genome.fa 36 sequences; 32,444,998 total letters Searching....................................done Score E Sequences producing significant alignments: (bits) Value contig_36 35 0.064 contig_34 30 2.1 contig_33 30 2.7 contig_07 30 3.5 contig_29 29 4.6 contig_21 29 6.0 contig_25 28 7.9 >contig_36 Length = 2713248 Score = 35.4 bits (80), Expect = 0.064 Identities = 57/222 (25%), Positives = 80/222 (36%), Gaps = 48/222 (21%) Frame = -2 Query: 20 LCVLCGLPAAGKSTF-ARALAHRLQQEQ-------------GWAIGVVAYDDVMPD---- 61 L ++ G+PAAGKSTF A H LQ++ G V+ D V+ D Sbjct: 2169554 LFLVTGIPAAGKSTFLVAAQRHVLQRDSISGEVPIFGGRCHGRICSVLELDKVLADLDAA 2169375 Query: 62 -------AFLAGARARPAPSQWKLLRQELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDF 114 A AG R + +P W+ + LL+ + L I G +V + TE Sbjct: 2169374 TVHEKDTAASAGER-KFSPRLWRQATRRLLELTQSALRTCIEG---TVNGDATE------ 2169225 Query: 115 ITCLKDQDLIFSAAFEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLAR-----K 169 AV +F+ +DN +Y+SMR YQ+ R + Sbjct: 2169224 -------------------------NAVVPMIFV--EDNMHYRSMRERYYQMCRTLEREE 2169126 Query: 170 YSLG------------------FCQLFLDCPLETCLQRNGQR 193 YSL +L PL CL RN QR Sbjct: 2169125 YSLQSPHEDPAAAVQSRQPLIVLFELRFATPLAVCLARNAQR 2169000 Score = 33.1 bits (74), Expect = 0.32 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%) Frame = -3 Query: 18 RGLC-----VLCGLPAAGKSTFARALAHRLQQEQGWAIGVVAY 55 RG C VLCGLP AGKST A L+ L ++ V + Sbjct: 2671084 RGRCPLTVVVLCGLPGAGKSTLAMVLSRLLASQEASPFSFVVH 2670956 >contig_34 Length = 1750858 Score = 30.4 bits (67), Expect = 2.1 Identities = 18/47 (38%), Positives = 22/47 (46%) Frame = -1 Query: 8 RGTGSDGPRKRGLCVLCGLPAAGKSTFARALAHRLQQEQGWAIGVVA 54 RG G +R +CVLCG AG A A+ E GW + V A Sbjct: 735493 RGEARCGEARRRVCVLCGCLPAGALLAALAV*GVAMVEGGWGVCVRA 735353 >contig_33 Length = 1453978 Score = 30.0 bits (66), Expect = 2.7 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 5/95 (5%) Frame = +2 Query: 172 LGFCQLFLDCPLET---CLQRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSL--TI 226 + C+LF+D PL+T C+ PP + L P NA+ H SL I Sbjct: 345701 ISMCRLFVDLPLQTVALCVS---------PPSLL------LAPPAHTHNAYMHFSLLRLI 345835 Query: 227 PSPACASEASLEVTDLLLTALENPVKYAEDNMEQK 261 P P ++ L+V +L + VK ++ N + K Sbjct: 345836 PPPHLLAKHILDVNTCVLYSFLVRVKQSKRNTQTK 345940 >contig_07 Length = 604754 Score = 29.6 bits (65), Expect = 3.5 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Frame = +1 Query: 192 QRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASE-ASLEVTDLLLTALENP 250 QRPQ PP T+H + R+L+ W + AC E A+ + + L L+ P Sbjct: 205084 QRPQRHPPHTLHRVRRQLQ-------CWRDVAHVQKHEACLHEAAAADDATVQLVVLQPP 205242 Query: 251 VKYAEDNMEQKDTDRII 267 + + Q++ D +I Sbjct: 205243 EAHKLAMVLQREADLLI 205293 >contig_29 Length = 1258350 Score = 29.3 bits (64), Expect = 4.6 Identities = 28/109 (25%), Positives = 41/109 (37%), Gaps = 5/109 (4%) Frame = +2 Query: 15 PRKRGLCVLCGLPAAGKSTFARALAHRLQQEQGWAIGVV-----AYDDVMPDAFLAGARA 69 PR+ LC + TF R+ RLQ V +Y+ V D A Sbjct: 1153088 PRRIALCSASVNTSLFFQTFPRSAEGRLQDVVVVTSARVPLIKFSYNGVHVDLLFASVDM 1153267 Query: 70 RPAPSQWKLLRQELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCL 118 R AP +LLR + L + A +NG + + R + D C+ Sbjct: 1153268 RTAPDTNELLRDDFLSLVSLPCRATVNGIRTILEIRRRLPLPLDAYACV 1153414 >contig_21 Length = 767234 Score = 28.9 bits (63), Expect = 6.0 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 4/74 (5%) Frame = -1 Query: 16 RKRGLCVLCGLPAAGKSTFARALAHRLQQEQGWAIG----VVAYDDVMPDAFLAGARARP 71 R R LC L L G R+ + + E+G G A V+P F R+ P Sbjct: 196220 RSRSLCALAVLLCFGSMYVRRSASQPISGEEGTLAGFRWMTTASAAVLPSHF--ACRSTP 196047 Query: 72 APSQWKLLRQELLK 85 P W LL ++ K Sbjct: 196046 PPPLWLLLTTKVGK 196005 >contig_25 Length = 897883 Score = 28.5 bits (62), Expect = 7.9 Identities = 16/52 (30%), Positives = 22/52 (42%) Frame = +3 Query: 185 TCLQRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASEAS 236 TC QR G+RP+A PP R +P + + + A S AS Sbjct: 417219 TCGQRRGRRPRAAPPSAAPCPYRVPRRPAGQHRKRRRRGSSAAAAAAVSPAS 417374 Database: L.donovani_BPK282A1/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 32,444,998 Number of sequences in database: 36 Lambda K H 0.321 0.134 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,831,675 Number of Sequences: 36 Number of extensions: 362168 Number of successful extensions: 2248 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 2102 Number of HSP's gapped (non-prelim): 439 length of query: 348 length of database: 10,814,999 effective HSP length: 101 effective length of query: 247 effective length of database: 10,811,363 effective search space: 2670406661 effective search space used: 2670406661 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 61 (28.1 bits)