TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|224465209|ref|NP_699167.2| L-seryl-tRNA(Sec) kinase [Homo sapiens] (348 letters) Database: G.niphandrodes/genome.fa 3680 sequences; 15,362,869 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|338240620|gb|AFNH01002856.1| Gregarina niphandrodes asmbl.356... 33 0.11 gi|338241524|gb|AFNH01002403.1| Gregarina niphandrodes asmbl.314... 32 0.32 gi|338241714|gb|AFNH01002308.1| Gregarina niphandrodes asmbl.305... 31 0.55 gi|338240967|gb|AFNH01002683.1| Gregarina niphandrodes asmbl.340... 29 2.1 gi|338240773|gb|AFNH01002779.1| Gregarina niphandrodes asmbl.349... 25 3.1 gi|338244961|gb|AFNH01000684.1| Gregarina niphandrodes asmbl.159... 28 3.5 gi|338241612|gb|AFNH01002359.1| Gregarina niphandrodes asmbl.310... 28 4.6 gi|338240479|gb|AFNH01002926.1| Gregarina niphandrodes asmbl.363... 28 6.0 gi|338241434|gb|AFNH01002448.1| Gregarina niphandrodes asmbl.318... 28 6.0 gi|338241700|gb|AFNH01002315.1| Gregarina niphandrodes asmbl.306... 28 6.0 gi|338242672|gb|AFNH01001829.1| Gregarina niphandrodes asmbl.261... 28 6.0 gi|338240753|gb|AFNH01002789.1| Gregarina niphandrodes asmbl.350... 27 7.9 gi|338241508|gb|AFNH01002411.1| Gregarina niphandrodes asmbl.315... 27 7.9 gi|338244975|gb|AFNH01000677.1| Gregarina niphandrodes asmbl.159... 27 7.9 >gi|338240620|gb|AFNH01002856.1| Gregarina niphandrodes asmbl.3568, whole genome shotgun sequence Length = 4879 Score = 33.5 bits (75), Expect = 0.11 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 2/99 (2%) Frame = -1 Query: 87 LEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKDQDLI-FSAAFEAQSCYLL-TKTAVSR 144 L +F ++++ Q P + + +E + L L+ F + +++SCY L ++ R Sbjct: 727 LLFFFLSLLRPVQSFYPSHHS--FFEPLVPVLASTTLLLFCRSLDSESCYCLHSRLHAIR 554 Query: 145 PLFLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLDCPL 183 P +D F+Y ++ VY R Y L LFL P+ Sbjct: 553 PT--AVDCPFHYYTISSHVYPFIRDYILLLGLLFLGLPV 443 >gi|338241524|gb|AFNH01002403.1| Gregarina niphandrodes asmbl.3147, whole genome shotgun sequence Length = 10973 Score = 32.0 bits (71), Expect = 0.32 Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%) Frame = +3 Query: 15 PRKRGLCV-LCGLPAAGKSTFARAL 38 P RGLC+ GLP AGKST A+AL Sbjct: 9978 PYLRGLCIYFTGLPCAGKSTLAQAL 10052 >gi|338241714|gb|AFNH01002308.1| Gregarina niphandrodes asmbl.3055, whole genome shotgun sequence Length = 8864 Score = 31.2 bits (69), Expect = 0.55 Identities = 20/70 (28%), Positives = 32/70 (45%) Frame = +2 Query: 73 PSQWKLLRQELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKDQDLIFSAAFEAQ 132 P +W LL + + EY ++ + + Q +V P W+D + L D L+ F A Sbjct: 7775 PGRWSLLARNRMLLAEYGVLHINSCTQSTVRP------WDDSVIRLLDDALLPGTLFPAA 7936 Query: 133 SCYLLTKTAV 142 + KTAV Sbjct: 7937 APETTEKTAV 7966 >gi|338240967|gb|AFNH01002683.1| Gregarina niphandrodes asmbl.3405, whole genome shotgun sequence Length = 6281 Score = 29.3 bits (64), Expect = 2.1 Identities = 18/54 (33%), Positives = 24/54 (44%) Frame = -1 Query: 191 GQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASEASLEVTDLLL 244 G RP PP +P PE A H+SL + S A ++ S + LLL Sbjct: 5150 GSRPPRAPPRPHQSRPHPHCEPAPETTALPHSSLAVRSSAAPTKMSPLLPPLLL 4989 >gi|338240773|gb|AFNH01002779.1| Gregarina niphandrodes asmbl.3498, whole genome shotgun sequence Length = 14632 Score = 25.4 bits (54), Expect(2) = 3.1 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = -2 Query: 183 LETCLQRNGQRPQALPPETIHLMG 206 L+TCL + P PP T+H+ G Sbjct: 11832 LKTCLSSHRISPAMPPPRTVHVNG 11761 Score = 21.2 bits (43), Expect(2) = 3.1 Identities = 9/13 (69%), Positives = 9/13 (69%) Frame = -1 Query: 171 SLGFCQLFLDCPL 183 S GF LFL CPL Sbjct: 11956 SWGFPALFLTCPL 11918 >gi|338244961|gb|AFNH01000684.1| Gregarina niphandrodes asmbl.15993, whole genome shotgun sequence Length = 34239 Score = 28.5 bits (62), Expect = 3.5 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 9/87 (10%) Frame = -2 Query: 196 ALPPETIHLMGRKLEKPNPEKNAWEHNSL---------TIPSPACASEASLEVTDLLLTA 246 A+PPE + + P W+ L T P+ A AS+A TDL +TA Sbjct: 17411 AVPPEPVPTQAAETAD-GPSPRLWDPLRLSGPTMSRPGTGPTAAAASDAIFPKTDLNITA 17235 Query: 247 LENPVKYAEDNMEQKDTDRIICSTNIL 273 L P + + T++ + +IL Sbjct: 17234 LNPPADVRQITWDVPKTEKDSSADSIL 17154 >gi|338241612|gb|AFNH01002359.1| Gregarina niphandrodes asmbl.3103, whole genome shotgun sequence Length = 11623 Score = 28.1 bits (61), Expect = 4.6 Identities = 9/28 (32%), Positives = 17/28 (60%) Frame = -2 Query: 300 EMTFKQRWVRANHAAIWRIILGNEHIKC 327 E ++RW++A HA IW ++ ++ C Sbjct: 7974 ERRLQERWLKATHAPIWYEVMSDQVRNC 7891 >gi|338240479|gb|AFNH01002926.1| Gregarina niphandrodes asmbl.3630, whole genome shotgun sequence Length = 8712 Score = 27.7 bits (60), Expect = 6.0 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 4/63 (6%) Frame = +2 Query: 182 PLETCLQRNGQRPQALPP----ETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASEASL 237 P L+RN +RP+ PP E + P P + W + P P+ AS + Sbjct: 8450 PQNLKLRRNNRRPRRTPPPPSAELQPPHPESADPPRPRRARWPRPTSASPKPSRASAKIV 8629 Query: 238 EVT 240 + T Sbjct: 8630 QPT 8638 >gi|338241434|gb|AFNH01002448.1| Gregarina niphandrodes asmbl.3188, whole genome shotgun sequence Length = 22809 Score = 27.7 bits (60), Expect = 6.0 Identities = 15/45 (33%), Positives = 21/45 (46%) Frame = -2 Query: 145 PLFLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLDCPLETCLQR 189 P+ L Y +R + Y+ ARK+ LGF C L CL + Sbjct: 17855 PIAACLGTIVYLVHVRRQRYREARKWILGFVSEHASCLLGICLSK 17721 >gi|338241700|gb|AFNH01002315.1| Gregarina niphandrodes asmbl.3062, whole genome shotgun sequence Length = 6770 Score = 27.7 bits (60), Expect = 6.0 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 4/45 (8%) Frame = +1 Query: 193 RPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPA----CAS 233 +PQA PP T H K NP ++ SL+ P P+ CAS Sbjct: 4273 KPQA-PPTTPHTSPSKPSISNPSNTSYSFRSLSTPIPSLQFTCAS 4404 >gi|338242672|gb|AFNH01001829.1| Gregarina niphandrodes asmbl.2619, whole genome shotgun sequence Length = 4605 Score = 27.7 bits (60), Expect = 6.0 Identities = 9/19 (47%), Positives = 11/19 (57%) Frame = +1 Query: 320 LGNEHIKCRSAKVGWLQCC 338 LGN+ CR+ GW CC Sbjct: 877 LGNQLATCRAGTTGWTTCC 933 >gi|338240753|gb|AFNH01002789.1| Gregarina niphandrodes asmbl.3506, whole genome shotgun sequence Length = 20525 Score = 27.3 bits (59), Expect = 7.9 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%) Frame = +2 Query: 313 AAIWRIILGNEHIKCRSAKVGWLQ--CCRIEKRPL 345 A++WR H+KCRS +V W Q C ++K+ L Sbjct: 18191 ASLWRS--QQRHLKCRSRRVVWSQFGCGGLKKKTL 18289 >gi|338241508|gb|AFNH01002411.1| Gregarina niphandrodes asmbl.3154, whole genome shotgun sequence Length = 11819 Score = 27.3 bits (59), Expect = 7.9 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%) Frame = -2 Query: 183 LETCLQRNGQRPQALPPETIHLMGRKLEKPN----PEKNAWEHNSLTIP 227 LET L+R G Q L P +HL L P+ P + +W H+ + P Sbjct: 8473 LETNLRRFGSMVQVLLP*LVHLGSN*LGLPSLFLRPARRSWIHHPVEQP 8327 >gi|338244975|gb|AFNH01000677.1| Gregarina niphandrodes asmbl.15987, whole genome shotgun sequence Length = 41769 Score = 27.3 bits (59), Expect = 7.9 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Frame = -2 Query: 186 CLQRNG--QRPQALPPETIHLMGRKLEKPNPEKNAWEHN 222 CL+ +G Q+P+AL I L RK+ + E A +HN Sbjct: 18158 CLENHGTSQKPKALVGNKIDLTKRKVSRKRAEALAVKHN 18042 Database: G.niphandrodes/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 15,362,869 Number of sequences in database: 3680 Lambda K H 0.321 0.134 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,146,896 Number of Sequences: 3680 Number of extensions: 148444 Number of successful extensions: 907 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 628 Number of HSP's successfully gapped in prelim test: 24 Number of HSP's that attempted gapping in prelim test: 223 Number of HSP's gapped (non-prelim): 745 length of query: 348 length of database: 5,120,956 effective HSP length: 96 effective length of query: 252 effective length of database: 4,767,676 effective search space: 1201454352 effective search space used: 1201454352 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 58 (26.9 bits)