TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|224465209|ref|NP_699167.2| L-seryl-tRNA(Sec) kinase [Homo
sapiens]
         (348 letters)

Database: F.cylindrus/genome.fa 
           271 sequences; 80,540,407 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_6                                                             46   9e-05
scaffold_15                                                            41   0.004
scaffold_87                                                            33   1.0  
scaffold_8                                                             33   1.0  
scaffold_20                                                            30   5.0  
scaffold_18                                                            30   5.0  
scaffold_1                                                             30   8.5  

>scaffold_6
          Length = 2967614

 Score = 46.2 bits (108), Expect = 9e-05
 Identities = 55/222 (24%), Positives = 94/222 (42%), Gaps = 17/222 (7%)
 Frame = +1

Query: 22     VLCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYDDVMPDAFLAGARARPAPSQWKLLRQ 81
              +L GLPA+GKS    +LA +L+++  +       DD          R R    ++ +L +
Sbjct: 516979 LLAGLPASGKS----SLAQKLRKQFDYHNNTCTTDDC--------HRRRLIHIEYDVLEE 517122

Query: 82     ELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKDQDLIFSAAFEAQSCYLLTKTA 141
              +LL           +    +   NR    W         Q  I     E QS  ++   +
Sbjct: 517123 DLLLLSSTEEYEETSNNDDTCWKNRRRDAWNQ-----ARQIAIEQMEKEMQSETVINDDS 517287

Query: 142    VSR---PLFLVLDDNFYYQSMRYEVYQLARKY-----------SLGFCQLFLDCPLETCL 187
               SR      +++DDNF+ + MR ++++   +Y           +L F  L++  P+  CL
Sbjct: 517288 SSRRSTNTIILMDDNFHLRGMRKQIHRSLLRYQQQQQSTSLNMNLRFGTLYIKTPINICL 517467

Query: 188    QRNGQRP--QALPPETIHLMGRKLEKPNPEKNAWE-HNSLTI 226
              +RN  R   + +P + I  M    E   P + AWE  +S+TI
Sbjct: 517468 ERNRVRSGRRRVPDDVIIKMDAAFE---PPRTAWEVDSSMTI 517584


>scaffold_15
          Length = 1348792

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 14/93 (15%)
 Frame = -3

Query: 148    LVLDDNFYYQSMRYEVYQLARKY-----------SLGFCQLFLDCPLETCLQRNGQRP-- 194
              +++DDNF+ + MR ++Y+   ++           +L F  L++  P+  CL+RN  R   
Sbjct: 645464 ILMDDNFHLRGMRKQIYRSLLRHQQHQQPTSMNMNLRFGTLYIKTPINICLERNRLRSGR 645285

Query: 195    QALPPETIHLMGRKLEKPNPEKNAWE-HNSLTI 226
              + +P + I  M    E   P + AWE  +S+TI
Sbjct: 645284 RRVPDDVIIKMDAAFE---PPRTAWEVDSSMTI 645195


>scaffold_87
          Length = 155492

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -1

Query: 215   EKNAWEHNSLT-IPSPACASEASLEVTDLLLTALENPVKY 253
             E +++E N  T +P+PAC  E++  +T+  + ALE P KY
Sbjct: 45212 EFHSYEFNPPTSLPNPACVDESTQALTESSVKALEAPTKY 45093


>scaffold_8
          Length = 2651504

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -1

Query: 215    EKNAWEHNSLT-IPSPACASEASLEVTDLLLTALENPVKY 253
              E +++E N  T +P+PAC  E++  +T+  + ALE P KY
Sbjct: 853709 EFHSYEFNPPTSLPNPACVDESTQALTESSVKALEAPTKY 853590


>scaffold_20
          Length = 1108856

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 300   EMTFKQRWVRANHAAIWRIILGNEHIKCRSAKVGWLQCCRIEKRPLS 346
             E TF  +++  N + IW II+      C  +      CCR   R +S
Sbjct: 16713 ECTFSSKYITCN*SLIWYIIIITSTCSCTCSCTCSCTCCRCASRKIS 16853


>scaffold_18
          Length = 1144490

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = -3

Query: 213    NPEKNAWEHNSLTIPSPACASEASLEVTDLLLTALENPVKYAEDNMEQK 261
              NPE  AW+ N +  P P   ++  + V    + A  + + Y  D+ + +
Sbjct: 280989 NPEYTAWKKNDIVPPFPPSNNDMPISVATASVIASSSAISYLSDSSDDE 280843


>scaffold_1
          Length = 5926375

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +3

Query: 116    TCLKDQDLIFSAAF--EAQSCYLLTK-TAVSRPLFLVLDDNFYYQSMRYEVYQLARKYSL 172
              +C+   D I    F  E Q C LLT   A+  PL+ + +    ++ +   +YQL+ +   
Sbjct: 513984 SCILSDDTILPLFFDLEVQRCNLLTHHRAICSPLYFMGEFGKKFEDL*LTLYQLSTRAFN 514163

Query: 173    GFCQLF 178
               FC  F
Sbjct: 514164 AFCMWF 514181


  Database: F.cylindrus/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 80,540,407
  Number of sequences in database:  271
  
Lambda     K      H
   0.321    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,763,066
Number of Sequences: 271
Number of extensions: 523331
Number of successful extensions: 2275
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1926
Number of HSP's gapped (non-prelim): 857
length of query: 348
length of database: 26,846,802
effective HSP length: 107
effective length of query: 241
effective length of database: 26,817,805
effective search space: 6463091005
effective search space used: 6463091005
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)