TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|224465209|ref|NP_699167.2| L-seryl-tRNA(Sec) kinase [Homo sapiens] (348 letters) Database: D.fasciculatum/genome.fa 25 sequences; 31,019,208 total letters Searching.........................done Score E Sequences producing significant alignments: (bits) Value gi|328874319|gb|GL883008.1| Dictyostelium fasciculatum unplaced ... 40 7e-07 gi|328871378|gb|GL883013.1| Dictyostelium fasciculatum unplaced ... 32 0.89 gi|328866373|gb|GL883027.1| Dictyostelium fasciculatum unplaced ... 30 2.6 gi|328866594|gb|GL883026.1| Dictyostelium fasciculatum unplaced ... 30 2.6 gi|328868227|gb|GL883021.1| Dictyostelium fasciculatum unplaced ... 28 9.8 >gi|328874319|gb|GL883008.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-G-o-80e12.f1-5, whole genome shotgun sequence Length = 2750715 Score = 39.7 bits (91), Expect(2) = 7e-07 Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 18/136 (13%) Frame = -2 Query: 173 GFCQLFLDCPLETCLQRNGQRPQA----------LPPETIHLMGRKLEKPNPEKNAWEHN 222 GF ++++ ++ C N +R + + ETI M R+ E PN WE N Sbjct: 1002062 GFGVIYINRDVDDCKVYNIEREKRDDLKLLPLIKVTGETIDKMNREFEPPNNPNIKWEFN 1001883 Query: 223 SLTIPSPACASEASL--------EVTDLLLTALENPVKYAEDNMEQKDTDRIICSTNILH 274 + + + +L E+ DLL L + +Q+ DR +C N++H Sbjct: 1001882 NTLTNNNNNNNNNNLDRIESFWNEIVDLLNKQLFVAPSDTIVDTQQRQQDRQVCENNLIH 1001703 Query: 275 KTDQTLRRIVSQTMKE 290 + D R +V + + Sbjct: 1001702 QLDIATRSVVGTLLSD 1001655 Score = 31.2 bits (69), Expect(2) = 7e-07 Identities = 13/33 (39%), Positives = 21/33 (63%) Frame = -1 Query: 148 LVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLD 180 ++LDDNF+ +SMRY Y++ R C L ++ Sbjct: 1002216 ILLDDNFHLKSMRYPYYRICRDCM*SNCWLLVN 1002118 Score = 28.1 bits (61), Expect = 9.8 Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 7/164 (4%) Frame = -1 Query: 85 KYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKDQDLIFSAAFEAQSCYLLTKTAVS- 143 +Y+ YFL +++ ++PP++ WED DL + Q T+ S Sbjct: 913290 QYMPYFLDRLLDIANKTLPPSKQLIFWEDSFV-----DLFLLQHGQYQKILHPNSTSTST 913126 Query: 144 RPLFLVLDDNFYYQSMR--YEVYQLARK----YSLGFCQLFLDCPLETCLQRNGQRPQAL 197 P++ +N YQ + + + R YS GF ++D ++C + + Sbjct: 913125 SPVY--NSNNIIYQVWKGGETIGEYLRDQEIIYSFGF---YMDPSFQSCKSFEDCYSRFV 912961 Query: 198 PPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASEASLEVTD 241 P +L+G E AWE +T PS C +E L V + Sbjct: 912960 PTNISNLLG-------VEGCAWE---MTQPSSNC-TEKDLTVVE 912862 >gi|328871378|gb|GL883013.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_ET2XIPL01CNAVH-3, whole genome shotgun sequence Length = 1908399 Score = 31.6 bits (70), Expect = 0.89 Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 2/36 (5%) Frame = -2 Query: 3 TAENIRGTGSDGPRKR--GLCVLCGLPAAGKSTFAR 36 T + I+G G+ P+ + L ++CG PA+GKSTF++ Sbjct: 241466 TGDVIQGGGNILPKTKVQELVLMCGFPASGKSTFSK 241359 >gi|328866373|gb|GL883027.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_EUAJFUG01CK1KI-5, whole genome shotgun sequence Length = 542435 Score = 30.0 bits (66), Expect = 2.6 Identities = 25/106 (23%), Positives = 40/106 (37%) Frame = -2 Query: 187 LQRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASEASLEVTDLLLTA 246 +Q N P +H G P P + +H++ IPSP SL T Sbjct: 61612 VQLNNSNNAIPSPTLLHHSGNS--HPTPSQQQQQHHNQPIPSPQLHHSNSLPPT------ 61457 Query: 247 LENPVKYAEDNMEQKDTDRIICSTNILHKTDQTLRRIVSQTMKEAK 292 +P +A +Q+ T +T + K + L + +KE K Sbjct: 61456 --HPNSHANHQQQQQQT-----TTQLHQKLENNLNLFWQKQLKEVK 61340 >gi|328866594|gb|GL883026.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_EU5ZYIE02H8LDV-5, whole genome shotgun sequence Length = 1919465 Score = 30.0 bits (66), Expect = 2.6 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%) Frame = -1 Query: 78 LLRQELLKYLEYFLMAVINGCQMSVPPNRTEAMWED----FITCLKDQDLIFSAAF 129 LL LL L L+ +N SVPPNR ++ W ++T + DL F +F Sbjct: 33752 LLISLLLLLLLVVLVVDVNITPSSVPPNRVDSSWSSSAARWLTIRSEDDLTFE*SF 33585 >gi|328868227|gb|GL883021.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_ET2XIPL01COFD4-5, whole genome shotgun sequence Length = 3468650 Score = 28.1 bits (61), Expect = 9.8 Identities = 19/86 (22%), Positives = 41/86 (47%) Frame = -1 Query: 232 ASEASLEVTDLLLTALENPVKYAEDNMEQKDTDRIICSTNILHKTDQTLRRIVSQTMKEA 291 ++ S+ + DL A + V+Y D + + D + ICS +L + + + ++T Sbjct: 527594 SNSKSISIKDL---ASKQDVRYVTDRLNKTDYESFICSI-LLSEEGPKMTSLATRTF--- 527436 Query: 292 KGNQEAFSEMTFKQRWVRANHAAIWR 317 N E ++ + ++R + N A W+ Sbjct: 527435 --NVETATDPSPEKRQMSKNKLAFWK 527364 Database: D.fasciculatum/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 31,019,208 Number of sequences in database: 25 Lambda K H 0.321 0.134 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,214,128 Number of Sequences: 25 Number of extensions: 201495 Number of successful extensions: 902 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 831 Number of HSP's gapped (non-prelim): 242 length of query: 348 length of database: 10,339,736 effective HSP length: 101 effective length of query: 247 effective length of database: 10,337,211 effective search space: 2553291117 effective search space used: 2553291117 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 61 (28.1 bits)