TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|224465209|ref|NP_699167.2| L-seryl-tRNA(Sec) kinase [Homo
sapiens]
         (348 letters)

Database: D.discoideum_AX4/genome.fa 
           6 sequences; 33,943,072 total letters

Searching......done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromoso...    68   1e-11
gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromoso...    33   0.43 

>gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromosome 4, whole
               genome shotgun sequence
          Length = 5450249

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 29/183 (15%)
 Frame = -1

Query: 149     VLDDNFYYQSMRYEVYQLA----------RKYSLGFCQLFLDCPLETCLQRNGQR--PQA 196
               +LDDN YY+SMRY+ YQL           ++  + +CQ++    L+   + N +R     
Sbjct: 4467644 ILDDNMYYKSMRYKFYQLTYNSSNNNNKEQEEDIRYCQIYFPNDLKKSKELNNKRLIKNN 4467465

Query: 197     LPPETIHLMGRKLEKPNPEKNAWE-HNSLTIPSPACASEASLEVTDLLLTALENPV---- 251
               +  E I  M    E+PN +KN WE  N+L        +++      L+L  ++N      
Sbjct: 4467464 VDDEGIEKMNDLFEQPNLDKNNWEKENTLFFNFDFNFNDSDNNQIKLILKDIKNKFYNFK 4467285

Query: 252     ------KYAEDNME------QKDTDRIICSTNILHKTDQTLRRIVSQTMKEAKGNQEAFS 299
                     +   DN E      +K+ D+II   NI+H+ D   R+I+ + MK    N   + 
Sbjct: 4467284 KLNTLQQQHYDNEELLQFDQKKENDKIITKNNIIHQFDLHCRKIIGELMKPTNNNNSNYQ 4467105

Query: 300     EMT 302
               + +
Sbjct: 4467104 QQS 4467096


>gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole
               genome shotgun sequence
          Length = 6357299

 Score = 32.7 bits (73), Expect = 0.43
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +1

Query: 17      KRGLCVLCGLPAAGKSTFARALAHR 41
               K  L + CGLPA GKS FA+A++ R
Sbjct: 6140629 KSKLVITCGLPACGKSYFAQAISER 6140703



 Score = 28.9 bits (63), Expect = 6.3
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +3

Query: 150     LDDNFYYQS--MRYEVYQLARKYSLGFCQLFLDCPLETCLQRNGQRPQALPPET 201
               LDD F   S  +  ++    R  S+GF  L  D  L+    R  + P+  PP T
Sbjct: 1445235 LDDKFKSVSHDLTCQMPSCKRSVSVGFPNLIYDVKLKNTFMRGSKAPETTPPVT 1445396


  Database: D.discoideum_AX4/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 33,943,072
  Number of sequences in database:  6
  
Lambda     K      H
   0.321    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,065,437
Number of Sequences: 6
Number of extensions: 166103
Number of successful extensions: 602
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 543
Number of HSP's gapped (non-prelim): 134
length of query: 348
length of database: 11,314,357
effective HSP length: 102
effective length of query: 246
effective length of database: 11,313,745
effective search space: 2783181270
effective search space used: 2783181270
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)