TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|224465209|ref|NP_699167.2| L-seryl-tRNA(Sec) kinase [Homo sapiens] (348 letters) Database: C.fasciculata/genome.fa 1089 sequences; 37,048,325 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value Cf_Contig612 | | 1 to 15948 37 0.033 Cf_Contig765 | | 1 to 162644 33 0.28 Cf_Contig1064 | | 1 to 131218 32 1.0 Cf_Contig714 | | 1 to 44307 32 1.0 Cf_Contig1054 | | 1 to 431369 30 2.3 Cf_Contig668 | | 1 to 37616 30 2.3 Cf_Contig900 | | 1 to 239103 30 3.0 Cf_Contig576 | | 1 to 60700 30 3.0 Cf_Contig1051 | | 1 to 359244 30 4.0 Cf_Contig983 | | 1 to 191195 30 4.0 Cf_Contig894 | | 1 to 240449 30 4.0 Cf_Contig662 | | 1 to 15043 30 4.0 Cf_Contig616 | | 1 to 39895 30 4.0 Cf_Contig858 | | 1 to 110926 29 5.2 >Cf_Contig612 | | 1 to 15948 Length = 15948 Score = 36.6 bits (83), Expect = 0.033 Identities = 19/48 (39%), Positives = 23/48 (47%) Frame = +1 Query: 7 IRGTGSDGPRKRGLCVLCGLPAAGKSTFARALAHRLQQEQGWAIGVVA 54 +RG GPRK C CGL G ST RA R +Q + W+ A Sbjct: 628 LRGQSGAGPRKLVRCRACGLARQGVSTDLRAAHLRFKQREWWSFWCAA 771 >Cf_Contig765 | | 1 to 162644 Length = 162644 Score = 33.5 bits (75), Expect = 0.28 Identities = 42/215 (19%), Positives = 78/215 (36%), Gaps = 38/215 (17%) Frame = +3 Query: 20 LCVLCGLPAAGKSTFARALAHRLQQEQ------------GWAIGVVAYDDVMPDAFLAGA 67 L +L GLP AGKS+F + H + + G ++ D V+ + + Sbjct: 55731 LILLTGLPGAGKSSFLQEAQHHVAAQPSQLFPLFGGRRCGRVAALLQLDAVLQSLASSPS 55910 Query: 68 RARP------APSQWKLLRQELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKDQ 121 +R +P +WK +EL + E + TCL++ Sbjct: 55911 SSREPEPPIFSPERWKQAVEELHRQTE-----------------------SELRTCLRE- 56018 Query: 122 DLIFSAAFEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARKYS---------- 171 + A +K+ + P+ V +DN + +SMR Y+L R+ Sbjct: 56019 ----ARAHSCSRDAAASKSEAAIPVIFV-EDNMHLRSMRERFYRLCRRLETEMEEGEKML 56183 Query: 172 ----------LGFCQLFLDCPLETCLQRNGQRPQA 196 + ++ P+ C++RN +R +A Sbjct: 56184 DGTSTVADGFVAVLEVRFTVPVAVCVERNMRRARA 56288 >Cf_Contig1064 | | 1 to 131218 Length = 131218 Score = 31.6 bits (70), Expect = 1.0 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 3/54 (5%) Frame = -3 Query: 188 QRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEH---NSLTIPSPACASEASLE 238 QR G P A PP + H R P P + W + + P AC + A L+ Sbjct: 121706 QRRGPSPAATPPPSAHRCRRWSSAPTPTRLPWRQQR*GAGSAPRQACRARAPLQ 121545 >Cf_Contig714 | | 1 to 44307 Length = 44307 Score = 31.6 bits (70), Expect = 1.0 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 3/54 (5%) Frame = -2 Query: 188 QRNGQRPQALPPETIHLMGRKLEKPNPEKNAW---EHNSLTIPSPACASEASLE 238 QR G P A PP + H R P P + W + + P AC + A L+ Sbjct: 3785 QRRGPSPAATPPRSAHRCRRWSSAPTPTRLPWRRQRRGAGSAPRRACRARAPLQ 3624 >Cf_Contig1054 | | 1 to 431369 Length = 431369 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/40 (42%), Positives = 19/40 (47%) Frame = +2 Query: 175 CQLFLDCPLETCLQRNGQRPQALPPETIHLMGRKLEKPNP 214 CQ LD G RP LPP +HL GR L +P P Sbjct: 96251 CQPVLDTTATVIGCCRGARPSPLPP--LHLPGRMLPRPGP 96364 >Cf_Contig668 | | 1 to 37616 Length = 37616 Score = 30.4 bits (67), Expect = 2.3 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = +1 Query: 23 LCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYD 56 + G P AGKS+ L + L +++G +GV+A D Sbjct: 24232 MSGSPGAGKSSLLETLGYYLCEKKGMRVGVLAVD 24333 >Cf_Contig900 | | 1 to 239103 Length = 239103 Score = 30.0 bits (66), Expect = 3.0 Identities = 19/52 (36%), Positives = 23/52 (44%) Frame = -3 Query: 182 PLETCLQRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACAS 233 PLE CL R Q PP T M ++ +K W SLT SP A+ Sbjct: 71929 PLE-CLTAKRARQQRPPPRTPRPMPPPQQQQQRQKTTWPAQSLTTHSPTRAA 71777 >Cf_Contig576 | | 1 to 60700 Length = 60700 Score = 30.0 bits (66), Expect = 3.0 Identities = 13/45 (28%), Positives = 21/45 (46%) Frame = +1 Query: 23 LCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYDDVMPDAFLAGA 67 LC P +++F A+ + E W + + YD V+ AGA Sbjct: 28183 LCRRPRVAQASFLEAVMEEARDEDTWEVVLARYDAVVRQRLAAGA 28317 >Cf_Contig1051 | | 1 to 359244 Length = 359244 Score = 29.6 bits (65), Expect = 4.0 Identities = 13/42 (30%), Positives = 20/42 (47%) Frame = -2 Query: 40 HRLQQEQGWAIGVVAYDDVMPDAFLAGARARPAPSQWKLLRQ 81 H + E WA+ + Y + P A RP ++W+ LRQ Sbjct: 286640 HSVLFEFLWAVSSIVYVHLRPPAGTRATAGRPTAARWRRLRQ 286515 >Cf_Contig983 | | 1 to 191195 Length = 191195 Score = 29.6 bits (65), Expect = 4.0 Identities = 15/48 (31%), Positives = 25/48 (52%) Frame = -2 Query: 252 KYAEDNMEQKDTDRIICSTNILHKTDQTLRRIVSQTMKEAKGNQEAFS 299 +Y ++++ ++ + LH T RRIVSQ ++ KG AFS Sbjct: 171352 RYENKKRQEREREKQTHNRK*LHTHTHTNRRIVSQLQRKRKGG*SAFS 171209 Score = 29.3 bits (64), Expect = 5.2 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 6/66 (9%) Frame = -2 Query: 185 TCLQRNGQ-RPQALPPETIHLMGRKLEKPNPEKNAWEH-----NSLTIPSPACASEASLE 238 TC +R G R LPP T R+ N N+W+H + T P A A+ + Sbjct: 188467 TCPRRAGSPRLPHLPPPTAERHERERSNNNNNNNSWKHRCEGGGARTQPPAAAAATPAAR 188288 Query: 239 VTDLLL 244 + LLL Sbjct: 188287 LVALLL 188270 >Cf_Contig894 | | 1 to 240449 Length = 240449 Score = 29.6 bits (65), Expect = 4.0 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 3/81 (3%) Frame = -1 Query: 184 ETCLQRNG---QRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASEASLEVT 240 + C+ R G +R A P E P P +W+ +SLT +P + A+ Sbjct: 88862 DLCVSREGVDWERVDADPGELFRQRNFLAAAPAPVSASWQASSLTATAPTVTTSAAPTTR 88683 Query: 241 DLLLTALENPVKYAEDNMEQK 261 + + LE + + +Q+ Sbjct: 88682 ETAVPQLERQQQQQQQQQQQQ 88620 >Cf_Contig662 | | 1 to 15043 Length = 15043 Score = 29.6 bits (65), Expect = 4.0 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 4/52 (7%) Frame = -2 Query: 293 GNQEAFSEMTFKQRWVRANHA----AIWRIILGNEHIKCRSAKVGWLQCCRI 340 G+ + F W + H +WR + G+ H KC V + CC I Sbjct: 2352 GSDPLCVRLAFPSAWEQGTHIYFFFCVWRRVRGDLHRKCARVSVFFFCCCCI 2197 >Cf_Contig616 | | 1 to 39895 Length = 39895 Score = 29.6 bits (65), Expect = 4.0 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 4/55 (7%) Frame = -2 Query: 4 AENIRGTGSDGPRKRGLCVLCGLPAAGKSTFARALAHRLQ----QEQGWAIGVVA 54 A GTG+ R+RG C+ G AAG A A R + Q G GV A Sbjct: 26637 ASTTSGTGTARQRRRGHCIFGGKRAAGGGADGAAAARRYRGRPPQVTGGGAGVAA 26473 >Cf_Contig858 | | 1 to 110926 Length = 110926 Score = 29.3 bits (64), Expect = 5.2 Identities = 13/48 (27%), Positives = 24/48 (50%) Frame = +2 Query: 192 QRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASEASLEV 239 +R A PP + + + + AW + +PSPA A++A+ E+ Sbjct: 93362 RRGSAAPPSPSNFLSTAAAEEEAGEEAWTAAAAALPSPAAATKATREL 93505 Database: C.fasciculata/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 37,048,325 Number of sequences in database: 1089 Lambda K H 0.321 0.134 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,598,224 Number of Sequences: 1089 Number of extensions: 388868 Number of successful extensions: 2474 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 173 Number of HSP's successfully gapped in prelim test: 82 Number of HSP's that attempted gapping in prelim test: 1855 Number of HSP's gapped (non-prelim): 1266 length of query: 348 length of database: 12,349,441 effective HSP length: 102 effective length of query: 246 effective length of database: 12,238,363 effective search space: 3010637298 effective search space used: 3010637298 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 62 (28.5 bits)