TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|224465209|ref|NP_699167.2| L-seryl-tRNA(Sec) kinase [Homo
sapiens]
         (348 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330848697|gb|ADNL01001906.1| Astrammina rara contig02264, who...    24   3.7  
gi|330849213|gb|ADNL01001390.1| Astrammina rara contig01649, who...    24   3.7  
gi|330850599|gb|ADNL01000004.1| Astrammina rara contig00005, who...    23   6.2  
gi|330850579|gb|ADNL01000024.1| Astrammina rara contig00025, who...    23   8.1  

>gi|330848697|gb|ADNL01001906.1| Astrammina rara contig02264,
          whole genome shotgun sequence
          Length = 174

 Score = 24.3 bits (51), Expect = 3.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 25 GLPAAGKSTFARALAHRLQQEQGW 48
          G+P++GKS F   +     Q  GW
Sbjct: 45 GIPSSGKSDFVDQMVVGYNQNYGW 116


>gi|330849213|gb|ADNL01001390.1| Astrammina rara contig01649, whole
           genome shotgun sequence
          Length = 160

 Score = 24.3 bits (51), Expect = 3.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 321 GNEHIKCRSAKVGWLQCCRIE 341
           G  H+ C  +   WL  CRIE
Sbjct: 98  GLYHLTCCKSTATWLSICRIE 160


>gi|330850599|gb|ADNL01000004.1| Astrammina rara contig00005, whole
           genome shotgun sequence
          Length = 288

 Score = 23.5 bits (49), Expect = 6.2
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = -2

Query: 198 PPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASEASLEVT 240
           P   + L+   L  PNP  N        +PSP  A  A +  T
Sbjct: 287 PRVVLGLLALNLSPPNPHMNFAPPGLKNVPSPVSALTAPV*TT 159


>gi|330850579|gb|ADNL01000024.1| Astrammina rara contig00025, whole
           genome shotgun sequence
          Length = 991

 Score = 23.1 bits (48), Expect = 8.1
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 135 YLLTKTAVSRPLFLVLD-DNFYYQSMRYEVYQ 165
           YLL+  A+S PLF   D  NF   S R+ +Y+
Sbjct: 229 YLLSLYALSHPLFFARDLSNF---SFRFPLYK 143


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.321    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 654,473
Number of Sequences: 3231
Number of extensions: 8957
Number of successful extensions: 30
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of query: 348
length of database: 483,365
effective HSP length: 75
effective length of query: 273
effective length of database: 241,040
effective search space: 65803920
effective search space used: 65803920
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)