TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|224465209|ref|NP_699167.2| L-seryl-tRNA(Sec) kinase [Homo
sapiens]
         (348 letters)

Database: A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325183681|emb|FR824091.1| Albugo laibachii Nc14, genomic cont...    30   2.6  
gi|325189417|emb|FR824258.1| Albugo laibachii Nc14, genomic cont...    30   2.6  
gi|325188816|emb|FR824236.1| Albugo laibachii Nc14, genomic cont...    30   3.4  
gi|325188145|emb|FR824209.1| Albugo laibachii Nc14, genomic cont...    29   5.9  
gi|325179460|emb|FR824046.1| Albugo laibachii Nc14, genomic cont...    28   7.7  
gi|325188376|emb|FR824218.1| Albugo laibachii Nc14, genomic cont...    28   7.7  

>gi|325183681|emb|FR824091.1| Albugo laibachii Nc14, genomic contig
             CONTIG_46_NC14_v4_127103_240
          Length = 127103

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 34/131 (25%), Positives = 53/131 (40%), Gaps = 14/131 (10%)
 Frame = +1

Query: 177   LFLDCPLETCLQRNGQ--RPQ--ALPPETIHLMGRKLEKPNPEKNAWE--HNSLTIPSPA 230
             L++ C  ET     G+   PQ  ++   T    GR  +KPN   N W    N LT PS A
Sbjct: 22051 LYVCCYFETKTSEIGR*AHPQLGSIVALTRRATGRSQKKPNKLDNTWNWYPNRLTTPSSA 22230

Query: 231   CASEASLEVTDLLLTALENPVKYAED--------NMEQKDTDRIICSTNILHKTDQTLRR 282
             C +       ++   +  +   Y ++        +    D D   C T+ + KT   LR 
Sbjct: 22231 CLTTRRKVTIEIARISQGDKSSYLQNWR*KLPCTSFLSSDHD---CKTHNMKKT--CLRL 22395

Query: 283   IVSQTMKEAKG 293
              ++ T+K   G
Sbjct: 22396 PLASTLKNGIG 22428


>gi|325189417|emb|FR824258.1| Albugo laibachii Nc14, genomic contig
            CONTIG_213_NC14_v4_44640_228
          Length = 44640

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 21/79 (26%), Positives = 37/79 (46%)
 Frame = -3

Query: 63   FLAGARARPAPSQWKLLRQELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKDQD 122
            FL G   RP P  ++ L   ++ +  Y   +  N    + PP+R  +++E+ +T      
Sbjct: 6550 FLKGQSTRPLP*AFRHLTSSVIPWRSYSTPS*SNL*WTTCPPSR--SLYEELVTIAASVF 6377

Query: 123  LIFSAAFEAQSCYLLTKTA 141
            + FS  F   +C L+T  A
Sbjct: 6376 MFFS-TFMPSACILVTAQA 6323


>gi|325188816|emb|FR824236.1| Albugo laibachii Nc14, genomic contig
             CONTIG_191_NC14_v4_49504_260
          Length = 49504

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -3

Query: 20    LCVLCGLPAAGKSTFARAL 38
             L V+CGLP AGK+  A+AL
Sbjct: 26741 LVVICGLPGAGKTVIAKAL 26685


>gi|325188145|emb|FR824209.1| Albugo laibachii Nc14, genomic contig
             CONTIG_164_NC14_v4_56461_235
          Length = 56461

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 20    LCVLCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYD 56
             + +L G+P +GKST AR L+  L Q   W + + + D
Sbjct: 28368 IIILRGIPGSGKSTVARQLSRILPQIH-WKVSICSAD 28475


>gi|325179460|emb|FR824046.1| Albugo laibachii Nc14, genomic contig
             CONTIG_1_NC14_v4_580768_240
          Length = 580768

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
 Frame = +2

Query: 183   LETCLQRNGQRPQALPP-------ETIHLMGRKLEKPNPEKNAWEHNSL 224
             +++   RN  +P A+PP        T+ L    L+     +N W+HNS+
Sbjct: 79052 IQSTFFRNENKPGAMPPTTKTGHTSTVKLGSTTLQPTFSTENLWDHNSV 79198


>gi|325188376|emb|FR824218.1| Albugo laibachii Nc14, genomic contig
             CONTIG_173_NC14_v4_55017_236
          Length = 55017

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 19/56 (33%), Positives = 24/56 (42%)
 Frame = -3

Query: 187   LQRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASEASLEVTDL 242
             LQR+  RP  + P   H     L  P P     +HN L  P   C++   LEV  L
Sbjct: 20971 LQRHRARPCHIRPHRSH---PSLPCPTPSTLKVKHNMLPSPEIECSTGEKLEVAAL 20813


  Database: A.laibachii_Nc14/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.321    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,841,297
Number of Sequences: 3816
Number of extensions: 228697
Number of successful extensions: 1198
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 717
Number of HSP's gapped (non-prelim): 726
length of query: 348
length of database: 10,913,379
effective HSP length: 101
effective length of query: 247
effective length of database: 10,527,963
effective search space: 2600406861
effective search space used: 2600406861
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)