TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|74553663|sp|Q6LX62.1|PSTK_METMP RecName:
Full=L-seryl-tRNA(Sec) kinase; AltName: Full=O-phosphoseryl-tRNA(Sec)
kinase; Short=PSTK
         (255 letters)

Database: T.congolense/genome.fa 
           11 sequences; 22,287,946 total letters

Searching...........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

TcIL3000_10_v2.embl                                                    32   0.24 
T.congo.pschr.9                                                        29   2.7  
T.congo.pschr2                                                         28   3.5  

>TcIL3000_10_v2.embl
          Length = 3612457

 Score = 32.3 bits (72), Expect = 0.24
 Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 50/183 (27%)
 Frame = +3

Query: 2       LIILTGLPSVGKSTFSKAFSKKM------------AEKNIDNIIL--------GTDLIRE 41
               L++LTGLP  GKST ++A  ++             A   +D+ I+        G+D + +
Sbjct: 2047035 LVLLTGLPGAGKSTLARALQRQRSVAGEPSRLSIEAVVELDDFIIAAGAVEDGGSDTLVK 2047214

Query: 42      SF----PVWKESYEE----FIRDSNNYLIKEALEN---KFSVIVDDTNYYNSKRR--DLM 88
               S       W+E+Y E      R+    L  +   N   +    VD   Y + +     L 
Sbjct: 2047215 STLFTPQRWREAYVESRSAIHRELRRCLTVDEGSNGRLRLVFFVDPLPYRSMRESYWKLC 2047394

Query: 89      N-IAKECD-------------TNYVTIYLKAPLNLLLKRNIERG---QKIPNEVIKNMYE 131
               N +++EC                 + + L  P+++ L+RN  R    Q +P  VIK + +
Sbjct: 2047395 NEVSRECGELRCVQAPERLNRVLMLEVRLNTPVDVCLRRNEFRSGTPQYVPPYVIKGISD 2047574

Query: 132     KFD 134
                FD
Sbjct: 2047575 SFD 2047583


>T.congo.pschr.9
          Length = 2092392

 Score = 28.9 bits (63), Expect = 2.7
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
 Frame = +1

Query: 3      IILTGLPSVGKSTFSKAFSKKMAEKNIDNIIL-GTDLIRESF---PVWKESYEEFIRDSN 58
              ++L+G+P+VGK+T  +    ++ E  +  +   G D I  +     VW+ + E F  D+ 
Sbjct: 415090 VLLSGIPAVGKTTMGRELVNELREDGLGWVFFSGADFIATATGKRAVWETTKEVF--DAL 415263

Query: 59     NYLIKEALENK 69
                 + E LE +
Sbjct: 415264 EKRLDELLEQQ 415296


>T.congo.pschr2
          Length = 799489

 Score = 28.5 bits (62), Expect = 3.5
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3

Query: 5      LTGLPSVGKSTFSKAFSKK 23
              + GLP+VGKSTF    SKK
Sbjct: 586604 IVGLPNVGKSTFFNVLSKK 586548


  Database: T.congolense/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 22,287,946
  Number of sequences in database:  11
  
Lambda     K      H
   0.315    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,756,329
Number of Sequences: 11
Number of extensions: 35096
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 107
Number of HSP's gapped (non-prelim): 34
length of query: 255
length of database: 7,429,315
effective HSP length: 95
effective length of query: 160
effective length of database: 7,428,270
effective search space: 1188523200
effective search space used: 1188523200
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)