TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|74553663|sp|Q6LX62.1|PSTK_METMP RecName:
Full=L-seryl-tRNA(Sec) kinase; AltName: Full=O-phosphoseryl-tRNA(Sec)
kinase; Short=PSTK
         (255 letters)

Database: S.arctica/genome.fa 
           15,618 sequences; 121,588,341 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.4674 of Sphaeroforma arctica JP610                          32   2.0  
supercont1.553 of Sphaeroforma arctica JP610                           29   9.9  

>supercont1.4674 of Sphaeroforma arctica JP610
          Length = 2338

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = +2

Query: 72   VIVDDTNYYNSKRRDLMNIAKECDTNYVTIYLKAPLNLLLKRNIER 117
            +++DD  YY S R+++  +A      YV +++     + ++R+  R
Sbjct: 1220 ILIDDNFYYRSMRKEIYQLADIMSIGYVQVWIVCDTEVAVRRDARR 1357



 Score = 30.4 bits (67), Expect = 4.5
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 120  KIPNEVIKNMYEKFDTPGTK-YAWDLPDITVDTTE 153
            ++  EVI+ M  +FDTP    +AW+   I +DTT+
Sbjct: 2071 RVGAEVIQRMSARFDTPDPHGFAWEKHTICIDTTD 2175


>supercont1.553 of Sphaeroforma arctica JP610
          Length = 60770

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 61    LIKEALENKFSVIVDDTNYYNSKRRDLMNIAKECDTNYVTIYL 103
             ++K  L     VI D  NY  SK   +++I   CD  Y+T+Y+
Sbjct: 42956 IVKHGLHVSHEVIQDIFNYSESKA--IISITIFCDNVYITVYM 43078


  Database: S.arctica/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 121,588,341
  Number of sequences in database:  15,618
  
Lambda     K      H
   0.315    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,004,199
Number of Sequences: 15618
Number of extensions: 231023
Number of successful extensions: 690
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 544
length of query: 255
length of database: 40,529,447
effective HSP length: 107
effective length of query: 148
effective length of database: 38,858,321
effective search space: 5751031508
effective search space used: 5751031508
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)