TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|74553663|sp|Q6LX62.1|PSTK_METMP RecName:
Full=L-seryl-tRNA(Sec) kinase; AltName: Full=O-phosphoseryl-tRNA(Sec)
kinase; Short=PSTK
         (255 letters)

Database: P.capsici/genome.fa 
           917 sequences; 64,023,748 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PHYCAscaffold_11                                                       29   5.6  
PHYCAscaffold_61                                                       29   7.3  

>PHYCAscaffold_11
          Length = 1076090

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +1

Query: 2      LIILTGLPSVGKSTFSKAFSKKM 24
              L++L G+P  GKS+F +A SK++
Sbjct: 677938 LLVLCGIPGSGKSSFRRALSKRI 678006


>PHYCAscaffold_61
          Length = 347729

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = -2

Query: 63    KEALENKFSVIVDDTNYYNSKRRDLMNIAKECDTNYVTIYLKAPLNLLLKR 113
             KE     ++++  + N +NS R+ +  +A   +TN   +Y K   N++L+R
Sbjct: 49669 KERRTKSYTIV--NVNEFNSTRKRMSVVAVNDETNEYVLYCKGADNMMLER 49523


  Database: P.capsici/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 64,023,748
  Number of sequences in database:  917
  
Lambda     K      H
   0.315    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,698,187
Number of Sequences: 917
Number of extensions: 97635
Number of successful extensions: 379
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 319
Number of HSP's gapped (non-prelim): 109
length of query: 255
length of database: 21,341,249
effective HSP length: 103
effective length of query: 152
effective length of database: 21,246,798
effective search space: 3229513296
effective search space used: 3229513296
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)