TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|74553663|sp|Q6LX62.1|PSTK_METMP RecName:
Full=L-seryl-tRNA(Sec) kinase; AltName: Full=O-phosphoseryl-tRNA(Sec)
kinase; Short=PSTK
         (255 letters)

Database: L.tarentolae/genome.fa 
           7267 sequences; 31,598,840 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Lt_contig3390  |  | 1 to 2944                                          30   1.6  
Lt_contig5262  |  | 1 to 11693                                         29   3.5  
Lt_contig4824  |  | 1 to 14951                                         29   3.5  
Lt_contig1459  |  | 1 to 10944                                         28   7.8  

>Lt_contig3390  |  | 1 to 2944
          Length = 2944

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -2

Query: 220  EIRKSFLKDCKKIESEKLDFEKIEKD 245
            E+R S LKDCK+ ++EK   EK +++
Sbjct: 2172 ELRSSHLKDCKRAKAEKEKLEKAKEE 2095


>Lt_contig5262  |  | 1 to 11693
          Length = 11693

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 2     LIILTGLPSVGKSTFSKAFSKKMA 25
             +++L GLP  GKST S A S+ +A
Sbjct: 10038 VVVLCGLPGAGKSTLSVALSRLLA 9967


>Lt_contig4824  |  | 1 to 14951
          Length = 14951

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 2     LIILTGLPSVGKSTFSKAFSKKMA 25
             +++L GLP  GKST S A S+ +A
Sbjct: 13296 VVVLCGLPGAGKSTLSVALSRLLA 13225


>Lt_contig1459  |  | 1 to 10944
          Length = 10944

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 5    LTGLPSVGKSTFSKAFSKK 23
            + GLP++GKSTF    SKK
Sbjct: 8253 IVGLPNIGKSTFFNILSKK 8309


  Database: L.tarentolae/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,598,840
  Number of sequences in database:  7267
  
Lambda     K      H
   0.315    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,453,441
Number of Sequences: 7267
Number of extensions: 34109
Number of successful extensions: 153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of query: 255
length of database: 10,532,946
effective HSP length: 97
effective length of query: 158
effective length of database: 9,828,047
effective search space: 1552831426
effective search space used: 1552831426
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)