TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|74553663|sp|Q6LX62.1|PSTK_METMP RecName:
Full=L-seryl-tRNA(Sec) kinase; AltName: Full=O-phosphoseryl-tRNA(Sec)
kinase; Short=PSTK
         (255 letters)

Database: L.donovani_BPK282A1/genome.fa 
           36 sequences; 32,444,998 total letters

Searching....................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

contig_36                                                              28   8.5  
contig_05                                                              28   8.5  

>contig_36
          Length = 2713248

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -2

Query: 1       MLIILTGLPSVGKSTFSKAFSKKMAEKN 28
               +L ++TG+P+ GKSTF  A  + + +++
Sbjct: 2169557 LLFLVTGIPAAGKSTFLVAAQRHVLQRD 2169474


>contig_05
          Length = 452426

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 15/62 (24%)
 Frame = +1

Query: 90     IAKECDTNYVTIYL--------------KAPLNLLLKRNIERGQKIPNEVIKNMYEK-FD 134
              +A+E +  Y T+ +               A +  ++  N+E+ Q+ P+E+IK++ +  FD
Sbjct: 302728 LAREAEIAYATVAMVTDMDAWSDAPHVDAAQVTKVMAANVEKAQRYPSEIIKSLAQNLFD 302907

Query: 135    TP 136
               P
Sbjct: 302908 DP 302913


  Database: L.donovani_BPK282A1/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,444,998
  Number of sequences in database:  36
  
Lambda     K      H
   0.315    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,348,470
Number of Sequences: 36
Number of extensions: 32352
Number of successful extensions: 94
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 93
Number of HSP's gapped (non-prelim): 6
length of query: 255
length of database: 10,814,999
effective HSP length: 98
effective length of query: 157
effective length of database: 10,811,471
effective search space: 1697400947
effective search space used: 1697400947
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)