TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|74553663|sp|Q6LX62.1|PSTK_METMP RecName:
Full=L-seryl-tRNA(Sec) kinase; AltName: Full=O-phosphoseryl-tRNA(Sec)
kinase; Short=PSTK
         (255 letters)

Database: G.niphandrodes/genome.fa 
           3680 sequences; 15,362,869 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|338241524|gb|AFNH01002403.1| Gregarina niphandrodes asmbl.314...    42   2e-04
gi|338241434|gb|AFNH01002448.1| Gregarina niphandrodes asmbl.318...    30   0.60 
gi|338241131|gb|AFNH01002601.1| Gregarina niphandrodes asmbl.332...    27   6.7  
gi|338242509|gb|AFNH01001910.1| Gregarina niphandrodes asmbl.269...    27   6.7  
gi|338242792|gb|AFNH01001769.1| Gregarina niphandrodes asmbl.256...    27   6.7  

>gi|338241524|gb|AFNH01002403.1| Gregarina niphandrodes asmbl.3147,
             whole genome shotgun sequence
          Length = 10973

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 11/166 (6%)
 Frame = +3

Query: 1     MLIILTGLPSVGKSTFSKAFSKKMAEKNIDN---IILGTDLIRESFPVWKESYEEFIRDS 57
             + I  TGLP  GKST ++A +  + E   D     +L  D+IR            F RD 
Sbjct: 9993  LCIYFTGLPCAGKSTLAQALNALLLESRHDQRKVTVLDADVIRTHL----SKGLGFSRDD 10160

Query: 58    NN-------YLIKEALENKFSVIVDDTNYYNSKRRDLMNIAKECDTNYVTIYLKAPLNLL 110
              +       Y+  E +++    +V +   Y   R+    + +     YV +Y+  PL + 
Sbjct: 10161 RSLNVRRIGYVAHEIVKHGGICLVANIAPYKDDRKYNRQLIESGGGTYVEVYVSTPLEVC 10340

Query: 111   LKRNIERGQKIPNEVIKNMYEKFDTPGTKY-AWDLPDITVDTTEKI 155
              KR+I   +++ N+    + ++F      Y A D PD+ ++++  +
Sbjct: 10341 EKRDI---KQLYNKARAGVIKQFTGISDPYEAPDEPDLIINSSNNL 10469


>gi|338241434|gb|AFNH01002448.1| Gregarina niphandrodes asmbl.3188,
            whole genome shotgun sequence
          Length = 22809

 Score = 30.4 bits (67), Expect = 0.60
 Identities = 14/74 (18%), Positives = 34/74 (45%)
 Frame = +1

Query: 22   KKMAEKNIDNIILGTDLIRESFPVWKESYEEFIRDSNNYLIKEALENKFSVIVDDTNYYN 81
            +++  + ++N ++  + +R  F    E+  E +RD     + +  EN   ++ +D   Y 
Sbjct: 9082 RRLTAEELENTMIEVENVRVPFDKIPEAKLETLRDLKELELDDEFENVAGIVKEDHRVYA 9261

Query: 82   SKRRDLMNIAKECD 95
             +   L    ++CD
Sbjct: 9262 EEVARLNEYIRQCD 9303


>gi|338241131|gb|AFNH01002601.1| Gregarina niphandrodes asmbl.3327,
             whole genome shotgun sequence
          Length = 18561

 Score = 26.9 bits (58), Expect = 6.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 3     IILTGLPSVGKSTFSKAFSKKMAE 26
             ++L G P+VGKSTF    S    E
Sbjct: 10961 VLLAGFPNVGKSTFMNVLSNANVE 11032


>gi|338242509|gb|AFNH01001910.1| Gregarina niphandrodes asmbl.2693,
             whole genome shotgun sequence
          Length = 21607

 Score = 26.9 bits (58), Expect = 6.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 85    RDLMNIAKECDTNYVTIYLKAP 106
             R+L+N+AK   T  +T+YLK P
Sbjct: 16924 RELINVAKTVKTPSLTVYLKDP 16859


>gi|338242792|gb|AFNH01001769.1| Gregarina niphandrodes asmbl.2565,
            whole genome shotgun sequence
          Length = 16716

 Score = 26.9 bits (58), Expect = 6.7
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
 Frame = -2

Query: 62   IKEALENKFSVIVDDTNYYNSKRRDLMNIAKECDTNYVTIYLKAPLNLLLKRN---IERG 118
            +KEAL  KF VI++           L  I K  D + + I       L LK        G
Sbjct: 5951 LKEALLQKFPVILNFC---------LAVIEKALDDSQLRIKALQCAALCLKHTPITFTLG 5799

Query: 119  QKIPNEVIKNMYEKFDT 135
              IPN ++ + YE +DT
Sbjct: 5798 LDIPNIILTSCYENYDT 5748


  Database: G.niphandrodes/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 15,362,869
  Number of sequences in database:  3680
  
Lambda     K      H
   0.315    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,532,734
Number of Sequences: 3680
Number of extensions: 22046
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of query: 255
length of database: 5,120,956
effective HSP length: 92
effective length of query: 163
effective length of database: 4,782,396
effective search space: 779530548
effective search space used: 779530548
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)