TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|74553663|sp|Q6LX62.1|PSTK_METMP RecName: Full=L-seryl-tRNA(Sec) kinase; AltName: Full=O-phosphoseryl-tRNA(Sec) kinase; Short=PSTK (255 letters) Database: F.cylindrus/genome.fa 271 sequences; 80,540,407 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_6 40 0.005 scaffold_15 38 0.020 scaffold_2 33 0.63 scaffold_47 30 4.1 scaffold_4 30 4.1 scaffold_33 30 5.4 scaffold_16 29 9.1 scaffold_10 29 9.1 >scaffold_6 Length = 2967614 Score = 39.7 bits (91), Expect = 0.005 Identities = 49/215 (22%), Positives = 87/215 (40%), Gaps = 59/215 (27%) Frame = +1 Query: 2 LIILTGLPSVGKSTFSKAFSKKMAEKNIDNIILGTD-----LIRESFPVWKE------SY 50 +I+L GLP+ GKS+ ++ K+ N N D LI + V +E S Sbjct: 516973 VILLAGLPASGKSSLAQKLRKQFDYHN--NTCTTDDCHRRRLIHIEYDVLEEDLLLLSST 517146 Query: 51 EEFIRDSNN-----------------YLIKEALENKFS------------------VIVD 75 EE+ SNN + E +E + +++D Sbjct: 517147 EEYEETSNNDDTCWKNRRRDAWNQARQIAIEQMEKEMQSETVINDDSSSRRSTNTIILMD 517326 Query: 76 DTNYYNSKRRDL-----------MNIAKECDTNYVTIYLKAPLNLLLKRNIERG--QKIP 122 D + R+ + + + + + T+Y+K P+N+ L+RN R +++P Sbjct: 517327 DNFHLRGMRKQIHRSLLRYQQQQQSTSLNMNLRFGTLYIKTPINICLERNRVRSGRRRVP 517506 Query: 123 NEVIKNMYEKFDTPGTKYAWDLPDITVDTTEKIDY 157 ++VI M F+ P T AW+ VD++ I+Y Sbjct: 517507 DDVIIKMDAAFEPPRT--AWE-----VDSSMTINY 517590 >scaffold_15 Length = 1348792 Score = 37.7 bits (86), Expect = 0.020 Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 2/60 (3%) Frame = -3 Query: 100 TIYLKAPLNLLLKRNIERG--QKIPNEVIKNMYEKFDTPGTKYAWDLPDITVDTTEKIDY 157 T+Y+K P+N+ L+RN R +++P++VI M F+ P T AW+ VD++ I+Y Sbjct: 645347 TLYIKTPINICLERNRLRSGRRRVPDDVIIKMDAAFEPPRT--AWE-----VDSSMTINY 645189 >scaffold_2 Length = 3822992 Score = 32.7 bits (73), Expect = 0.63 Identities = 38/196 (19%), Positives = 75/196 (38%), Gaps = 48/196 (24%) Frame = +2 Query: 3 IILTGLPSVGKSTFSKAFSKK-MAEKNIDNIIL---------------GTDLIRESFPVW 46 +I+TG PS GK+T + ++ + +ID +++ G D E+ Sbjct: 1549763 LIITGHPSAGKTTLAYLLKERALLHDDIDEVVVVNEESECGCWLNDDDGNDNKDETPNTE 1549942 Query: 47 K--------ESYE-EFIRDSNNYLIKEALENKFS-----------VIVDDTNYYNSKRRD 86 K E YE F+ +K + VI+D NY R + Sbjct: 1549943 KNKNVATKQELYETSFVEKQTRAALKSGFDRAVKKSSSKNNSRRLVILDSLNYIKGFRYE 1550122 Query: 87 LMNIAKECDTNYVTIYLKAPLNLLLKRNI------------ERGQKIPNEVIKNMYEKFD 134 L I+K + +++ +++ + N + Q+ E+++ + +++ Sbjct: 1550123 LHCISKAAGEKHGILWVLNRSSVVQQWNEGSTSNSHSPEKKNKQQRYSTELLQELISRYE 1550302 Query: 135 TPGTKYAWDLPDITVD 150 P ++ WD P TVD Sbjct: 1550303 PPDSRNRWDQPLFTVD 1550350 >scaffold_47 Length = 417959 Score = 30.0 bits (66), Expect = 4.1 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Frame = -3 Query: 22 KKMAEKNIDNIILGTDLIRESFPVW--KESYEEFIRDSNNYLIKEALENKFSVIVDDTNY 79 KK E+ D ++L L + +FP ++ Y+E +R + + L S DD + Sbjct: 193881 KKKFERIQDTLVL---LRQRNFPETPAEQEYKEVLRMVQTHSVLSKLHKYLSENDDDDDV 193711 Query: 80 -YNSKRRDLMNIAKECDTNYVTIYLKA 105 N + + +I EC+ + TIYL A Sbjct: 193710 ALNDRNKTSDDILDECEAKWRTIYLDA 193630 >scaffold_4 Length = 3206981 Score = 30.0 bits (66), Expect = 4.1 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = -2 Query: 36 TDLIRESFPVWKESYEEFIRDSNNYLIKEALENKFSVI 73 T L+R S V E++E F+RD+N+Y I + + V+ Sbjct: 1819327 TILVRPSILVPAENFERFVRDNNSYAIAGSKDKIIPVV 1819214 >scaffold_33 Length = 615088 Score = 29.6 bits (65), Expect = 5.4 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = -3 Query: 59 NYLIKEALENKFSVIVDDTNYYNSKRRDLMN 89 +YL++ AL+++ V+VDD +Y N D N Sbjct: 424160 SYLLERALDDQIVVVVDDNDYDNDNYNDNYN 424068 >scaffold_16 Length = 1295603 Score = 28.9 bits (63), Expect = 9.1 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%) Frame = -3 Query: 40 RESFPVWKESYEEFIRDSNNYLIKEALENKFSVIVDDTNYYNSKRRDLMNIAKECDTNYV 99 +ESFP ++ + + D N +L E + +D N +RD+MN DTN + Sbjct: 1105299 KESFPAFRRNSRD---DYNEFLTVLEEECNLHGVNNDGN---DNQRDMMNTNNNNDTNSI 1105138 Query: 100 TIYLKAPLNLLL-----KRNIERGQKIPNEVIKNMYEK 132 T+ N + K I+ ++I + I N + K Sbjct: 1105137 TVIDSTNSNKDVGEEEDKEGIKEEEEIKDNSIHNDHHK 1105024 >scaffold_10 Length = 1906272 Score = 28.9 bits (63), Expect = 9.1 Identities = 12/25 (48%), Positives = 18/25 (72%) Frame = -1 Query: 38 LIRESFPVWKESYEEFIRDSNNYLI 62 L+R S V E++E F+RD+N+Y I Sbjct: 869223 LVRPSILVPAENFERFVRDNNSYAI 869149 Database: F.cylindrus/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 80,540,407 Number of sequences in database: 271 Lambda K H 0.315 0.135 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,160,637 Number of Sequences: 271 Number of extensions: 192086 Number of successful extensions: 654 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 591 Number of HSP's gapped (non-prelim): 181 length of query: 255 length of database: 26,846,802 effective HSP length: 104 effective length of query: 151 effective length of database: 26,818,618 effective search space: 4049611318 effective search space used: 4049611318 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 63 (28.9 bits)