TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|74553663|sp|Q6LX62.1|PSTK_METMP RecName: Full=L-seryl-tRNA(Sec) kinase; AltName: Full=O-phosphoseryl-tRNA(Sec) kinase; Short=PSTK (255 letters) Database: D.fasciculatum/genome.fa 25 sequences; 31,019,208 total letters Searching.........................done Score E Sequences producing significant alignments: (bits) Value gi|328871378|gb|GL883013.1| Dictyostelium fasciculatum unplaced ... 43 2e-04 gi|328875389|gb|GL883007.1| Dictyostelium fasciculatum unplaced ... 34 0.087 gi|328864870|gb|GL883029.1| Dictyostelium fasciculatum unplaced ... 31 0.74 gi|328876102|gb|GL883006.1| Dictyostelium fasciculatum unplaced ... 29 3.7 gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced ... 28 6.2 gi|328868227|gb|GL883021.1| Dictyostelium fasciculatum unplaced ... 28 8.2 >gi|328871378|gb|GL883013.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_ET2XIPL01CNAVH-3, whole genome shotgun sequence Length = 1908399 Score = 43.1 bits (100), Expect = 2e-04 Identities = 29/99 (29%), Positives = 47/99 (47%) Frame = -2 Query: 2 LIILTGLPSVGKSTFSKAFSKKMAEKNIDNIILGTDLIRESFPVWKESYEEFIRDSNNYL 61 L+++ G P+ GKSTFSK +++ L T E+ I+ + Sbjct: 241409 LVLMCGFPASGKSTFSKTHFVPAGYVHVNRDTLKTK-------------EKCIK-----V 241284 Query: 62 IKEALENKFSVIVDDTNYYNSKRRDLMNIAKECDTNYVT 100 KE+L SV++D+TN + R D + +AK+C Y T Sbjct: 241283 CKESLAQGLSVVIDNTNPAKTDRLDYIKLAKQCKYKYKT 241167 >gi|328875389|gb|GL883007.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-G-p-12c09.r1-3, whole genome shotgun sequence Length = 1770755 Score = 34.3 bits (77), Expect = 0.087 Identities = 23/93 (24%), Positives = 43/93 (46%) Frame = +2 Query: 2 LIILTGLPSVGKSTFSKAFSKKMAEKNIDNIILGTDLIRESFPVWKESYEEFIRDSNNYL 61 L+I+ GLP+ GKSTF++ ++ L T +++ Sbjct: 1071242 LVIMVGLPASGKSTFTETHFVPAGYSRVNRDTLKT------------------KEACYKA 1071367 Query: 62 IKEALENKFSVIVDDTNYYNSKRRDLMNIAKEC 94 + AL+ SV++D+TN R+ +++AK+C Sbjct: 1071368 CQFALDQGKSVVIDNTNPSKEDRKVFIDMAKKC 1071466 Score = 34.3 bits (77), Expect = 0.087 Identities = 23/93 (24%), Positives = 43/93 (46%) Frame = +2 Query: 2 LIILTGLPSVGKSTFSKAFSKKMAEKNIDNIILGTDLIRESFPVWKESYEEFIRDSNNYL 61 L+I+ GLP+ GKSTF++ ++ L T +++ Sbjct: 1079210 LVIMVGLPASGKSTFTETHFVPAGYSRVNRDTLKT------------------KEACYKA 1079335 Query: 62 IKEALENKFSVIVDDTNYYNSKRRDLMNIAKEC 94 + AL+ SV++D+TN R+ +++AK+C Sbjct: 1079336 CQFALDQGKSVVIDNTNPSKEDRKVFIDMAKKC 1079434 >gi|328864870|gb|GL883029.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_EUAJFUG02HR96I-5, whole genome shotgun sequence Length = 3408800 Score = 31.2 bits (69), Expect = 0.74 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 5/42 (11%) Frame = -2 Query: 3 IILTGLPSVGKSTFSKAFSKKMAEKNIDNII-----LGTDLI 39 + LTG+ VGKST + F K++ + ID+ I LG D I Sbjct: 371902 VFLTGILGVGKSTTANLFGKQLFNRQIDSFIPYVIQLGKDRI 371777 >gi|328876102|gb|GL883006.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-G-b-205a01.r1-3, whole genome shotgun sequence Length = 2485436 Score = 28.9 bits (63), Expect = 3.7 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%) Frame = -2 Query: 2 LIILTGLPSVGKSTFSKAFSKKMAEKNIDNII--LGTDLIRESFP 44 ++IL+G VGKSTFS S +A K+ D + L D+ S P Sbjct: 1568803 ILILSGKGGVGKSTFSSQLSFAIANKSQDIQVGLLDIDICGPSIP 1568669 >gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-F-a-25c12.r2-5, whole genome shotgun sequence Length = 4166812 Score = 28.1 bits (61), Expect = 6.2 Identities = 10/37 (27%), Positives = 21/37 (56%) Frame = -3 Query: 67 ENKFSVIVDDTNYYNSKRRDLMNIAKECDTNYVTIYL 103 +N+ S++V+D + + RD+ NI + T+Y+ Sbjct: 1934090 QNQISIVVEDVQSVDQQERDITNIVHTINLPMTTLYV 1933980 >gi|328868227|gb|GL883021.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_ET2XIPL01COFD4-5, whole genome shotgun sequence Length = 3468650 Score = 27.7 bits (60), Expect = 8.2 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = -2 Query: 2 LIILTGLPSVGKSTFSKAFSKKMAEKNIDNIILGTDLIRESF 43 +I+LTG P +GK+T +K +K+ A +I I D E F Sbjct: 3274219 VILLTGGPGIGKTTLAKILAKQ-AGYDIQEINASDDRSGEEF 3274097 Database: D.fasciculatum/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 31,019,208 Number of sequences in database: 25 Lambda K H 0.315 0.135 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,898,537 Number of Sequences: 25 Number of extensions: 91211 Number of successful extensions: 356 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 307 Number of HSP's gapped (non-prelim): 182 length of query: 255 length of database: 10,339,736 effective HSP length: 98 effective length of query: 157 effective length of database: 10,337,286 effective search space: 1622953902 effective search space used: 1622953902 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 59 (27.3 bits)