TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|74553663|sp|Q6LX62.1|PSTK_METMP RecName: Full=L-seryl-tRNA(Sec) kinase; AltName: Full=O-phosphoseryl-tRNA(Sec) kinase; Short=PSTK (255 letters) Database: D.discoideum_AX4/genome.fa 6 sequences; 33,943,072 total letters Searching......done Score E Sequences producing significant alignments: (bits) Value gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromoso... 33 0.16 gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromoso... 31 1.1 gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromoso... 30 1.8 gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromos... 30 2.3 gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromoso... 28 5.2 >gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole genome shotgun sequence Length = 6357299 Score = 33.5 bits (75), Expect = 0.16 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 2/92 (2%) Frame = +1 Query: 2 LIILTGLPSVGKSTFSKAFSKKM--AEKNIDNIILGTDLIRESFPVWKESYEEFIRDSNN 59 L+I GLP+ GKS F++A S++ A K I+ LGT R Sbjct: 6140638 LVITCGLPACGKSYFAQAISERSSGAWKRINQDDLGT------------------RKKCE 6140763 Query: 60 YLIKEALENKFSVIVDDTNYYNSKRRDLMNIA 91 L+K+ L+ +VI+D N +RR+ + +A Sbjct: 6140764 DLLKQYLKAGHNVIIDRCNQDIGQRRNWIKLA 6140859 Score = 32.0 bits (71), Expect = 0.47 Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 22/157 (14%) Frame = -1 Query: 2 LIILTGLPSVGKSTFSKAFSKK--MAEKNIDNII---LGTDLIRESFPVWKESYEEFIRD 56 +I++ G GKSTFSK K+ +ID ++ G I +PV E Y E + + Sbjct: 4994069 IIMMCGCCGSGKSTFSKKKEKEEGYIRLSIDEMVWEKYGRHGI--DYPV--EKYREILDN 4993902 Query: 57 SNNYL---IKEALENKFSVIVDDTNYYNSKRRDLMNIAKECDTN------YVTIYLKAPL 107 ++ L + E + ++++D + + S R + ++ N IYLK+ Sbjct: 4993901 TDKELRQKLSELIIQGKNIVIDSSFWRKSTRESYRDFIEQVGINEGIVKEIQLIYLKSDY 4993722 Query: 108 NLLLKRNIERGQ--------KIPNEVIKNMYEKFDTP 136 L R R Q +I NE++ + + F P Sbjct: 4993721 ETLKNRLKIRNQSINANSPFEITNEILDHHFNGFQEP 4993611 Score = 29.6 bits (65), Expect = 2.3 Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 8/78 (10%) Frame = -2 Query: 37 DLIRESFPVWKESYEEFIRDSNNYLIKEALENK--------FSVIVDDTNYYNSKRRDLM 88 ++ +S ++K + E + N +L + NK ++ N Y + + L+ Sbjct: 5510596 EICDKSKQIYKSTNESNLEMENRFLEIQKQYNKQIEESNSLSDLLTQQNNLYKTIQNQLI 5510417 Query: 89 NIAKECDTNYVTIYLKAP 106 N+A +CD ++T Y +P Sbjct: 5510416 NVASQCD--FITFYKPSP 5510369 Score = 29.6 bits (65), Expect = 2.3 Identities = 30/147 (20%), Positives = 64/147 (43%), Gaps = 15/147 (10%) Frame = +2 Query: 2 LIILTGLPSVGKSTFSKAFSKKMAEKNIDNIILGTDLIRESFPV--------WKESYEEF 53 LI+ SVGKS +K+F + M K+ + +G +++ + +P+ W+ ++ Sbjct: 3950126 LILSNKFKSVGKSMGAKSFYESMIVKDEITLDIGLEILSKRYPIPPIENIYHWESIKNDY 3950305 Query: 54 IRDSNNYLIKEALENKFSVIVDDTNYYNSKRRDLMNIAKECDTNYVTIYLKAPLNLLL-- 111 I N + + N I+ N Y + +L I + N IY + +LL+ Sbjct: 3950306 I---NLGIPVDHFHNSLLRILKKNNNYEN-NNNLSIIKTLYENNVFKIYNLSQDSLLILL 3950473 Query: 112 -----KRNIERGQKIPNEVIKNMYEKF 133 N + K N+++ +++++ Sbjct: 3950474 ESYFDPINPSKSTKRDNDMVFQIFQQY 3950554 Score = 29.6 bits (65), Expect = 2.3 Identities = 18/60 (30%), Positives = 29/60 (48%) Frame = -3 Query: 22 KKMAEKNIDNIILGTDLIRESFPVWKESYEEFIRDSNNYLIKEALENKFSVIVDDTNYYN 81 K+ E I+N +G L+ P+W E+ ++NN +K N FS + +NY N Sbjct: 1223460 KERNENQINNFQIGVLLL----PIWGGKREDNEYNNNNNKLKLLFNNNFSHEIYHSNYSN 1223293 Score = 28.5 bits (62), Expect = 5.2 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 4/80 (5%) Frame = -2 Query: 4 ILTGLPSVGKSTFSKAFSKKMAEKNIDNIILGTDLIRESFPVWKESYEE----FIRDSNN 59 IL G+P + K ++ D++ ++I+ S W E+ I ++N+ Sbjct: 4235599 ILAGIPDIFDGIIVKDTTQYPKGSGEDSVSKFKEIIKNSLQFWTENKRRGIWIEIPETNS 4235420 Query: 60 YLIKEALENKFSVIVDDTNY 79 LI +EN FS +NY Sbjct: 4235419 ILIPTLVENGFSFHHCQSNY 4235360 >gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromosome 5, whole genome shotgun sequence Length = 5125352 Score = 30.8 bits (68), Expect = 1.1 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%) Frame = +3 Query: 9 PSVGKSTFSKAF----SKKMAEKNIDNIILGTDLIRESFPVWKESYEEFIRDSNNYLIKE 64 P + FSK+F +K M KN++ + L +D I FP+ + FI +N Y+I + Sbjct: 2252601 PKLVSLYFSKSFYQTITKSMLPKNLNFLYLKSDNIDIEFPLNMKYLAIFISKNNKYIINK 2252780 Query: 65 ALEN 68 E+ Sbjct: 2252781 INED 2252792 Score = 30.8 bits (68), Expect = 1.1 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 9/109 (8%) Frame = -3 Query: 33 ILGTDLIRESFPVWKESYEEFIRDSNNY------LIKEALENKFSVIVDDTNYYNSKRRD 86 ILGT +S+ S FI+ S NY +I + +S I K++ Sbjct: 1975920 ILGTTTTSKSYTSANGSITNFIKTSRNYI*KT*IIIS*CSNSIYSCIRSK*RVKKKKKKK 1975741 Query: 87 LMNIAKECDTN---YVTIYLKAPLNLLLKRNIERGQKIPNEVIKNMYEK 132 + NI K + N Y+ +Y+ LNL K+ ++ +K ++ K +K Sbjct: 1975740 IQNIIK*LNNNIYIYLHLYIYFFLNLKKKKKKKK*KKRIKKIEKKKKKK 1975594 Score = 30.4 bits (67), Expect = 1.4 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 4/97 (4%) Frame = +2 Query: 22 KKMAEKNIDNIILGTDLIRESFPVWKESYEEFIRDSNNYLIKEALENKFSVIVDDTNYY- 80 +K KN+D IL +I S D++N +I L N + I+D NY+ Sbjct: 3668324 EKQLSKNLDQNILINTIITSSI------------DNDNKIISTILNNNNNSIIDKLNYFT 3668467 Query: 81 ---NSKRRDLMNIAKECDTNYVTIYLKAPLNLLLKRN 114 N + D + + DT+ + + + +LL+ +N Sbjct: 3668468 QINNQQDNDDNDDYYQIDTDTIELIKQYQNSLLILKN 3668578 >gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromosome 6, whole genome shotgun sequence Length = 3602379 Score = 30.0 bits (66), Expect = 1.8 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%) Frame = +1 Query: 3 IILTGLPSVGKSTFSKAFSKK---MAEKNIDNIIL 34 I + GLP++GKSTF A + MA NI N+ + Sbjct: 1866736 ISIVGLPNIGKSTFFNALTSSNAAMAAVNISNLFI 1866840 Score = 27.7 bits (60), Expect = 8.9 Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 27/136 (19%) Frame = +2 Query: 2 LIILTGLPSVGKSTFSKAFSKKMAEKNID-----NIILGTDLIRESFPVWKESYEEFIR- 55 L+ LTG VGKS+ + SK M E +I+ +I+L D+ + + EEF + Sbjct: 1750277 LLFLTGPTGVGKSSLIRVLSKSM-EFDIEEWINPSIVLTRDMNDSLSTPYSSTLEEFKKW 1750453 Query: 56 --------------DSNNYLI-------KEALENKFSVIVDDTNYYNSKRRDLMNIAKEC 94 ++NN I L+N+ + N+ +S R L+ I + Sbjct: 1750454 LKFNGQGFSIFGNGNNNNKKILFVEEFPNVTLDNRIDFVETFENFLHSSRYPLIFILSDT 1750633 Query: 95 DTNYVTIYLKAPLNLL 110 + ++Y P + L Sbjct: 1750634 FSGNSSLYQLFPSSFL 1750681 >gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromosome 2, whole genome shotgun sequence Length = 8484197 Score = 29.6 bits (65), Expect = 2.3 Identities = 20/82 (24%), Positives = 37/82 (45%) Frame = +2 Query: 1 MLIILTGLPSVGKSTFSKAFSKKMAEKNIDNIILGTDLIRESFPVWKESYEEFIRDSNNY 60 + ++ G+ + K+ S S K + ID + GT + +E+YE + DS+ Sbjct: 6149348 IFVVQGGIVTKVKTEISTVSSPKPLIQTIDIKLNGTKIEAGEIKTIQEAYEPYDSDSSVV 6149527 Query: 61 LIKEALENKFSVIVDDTNYYNS 82 + +E E K D +YY + Sbjct: 6149528 VPEEVREGKSYQDYDQYDYYTT 6149593 Score = 28.1 bits (61), Expect = 6.8 Identities = 21/64 (32%), Positives = 34/64 (53%) Frame = +2 Query: 72 VIVDDTNYYNSKRRDLMNIAKECDTNYVTIYLKAPLNLLLKRNIERGQKIPNEVIKNMYE 131 VI + N KRR + + + + N +T L+L LKR I+ +++PN IK M Sbjct: 1334516 VIEQELNLE*KKRRR*LKVKQNENLNLMT-----HLHLNLKRRID*KKRLPNLGIKVMAI 1334680 Query: 132 KFDT 135 +FD+ Sbjct: 1334681 QFDS 1334692 >gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromosome 1, whole genome shotgun sequence Length = 4923596 Score = 28.5 bits (62), Expect = 5.2 Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 2/146 (1%) Frame = +1 Query: 13 KSTFSKAFSKKMAEKNIDNIILGTDLIRESFPVWKESYEEFIRDSNNYLIK-EALENKFS 71 KS F KN+D I+ G + + FP+ K + IR++ LIK +L+ + Sbjct: 978028 KSDIVYNFKHPALSKNVDPIVKGGTALLQDFPLLKTL--DIIRNNRMLLIKNRSLDYQLK 978201 Query: 72 VIVDDTNY-YNSKRRDLMNIAKECDTNYVTIYLKAPLNLLLKRNIERGQKIPNEVIKNMY 130 I NY Y ++++ N + N N N N +I N+ Sbjct: 978202 YIQSIYNYKYGNRKKFNFNNNNNINNNNNNNNNNNNNNNNNNNNNNNDNDNNNSIIVNID 978381 Query: 131 EKFDTPGTKYAWDLPDITVDTTEKID 156 D K +I ++ EK+D Sbjct: 978382 NNNDNNNEK------NINLNENEKVD 978441 Score = 28.5 bits (62), Expect = 5.2 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 1/83 (1%) Frame = +2 Query: 52 EFIRDSNNYLIKEALENKFSVIVDDTNYYNSKRRDLMNIAKECDTNYVTIYLKAPLNLLL 111 + +R++ N LIK LEN ++I+ SK + N E D + P + Sbjct: 981335 DILRNNKNQLIKPKLENSKTIIIAPPTQIISKNDNNYNNNNEIDNS-------IPFFKIW 981493 Query: 112 KRNIERGQKIPN-EVIKNMYEKF 133 + ++ RG+ I +++ N KF Sbjct: 981494 RNSVLRGEIISEIKILNNHLGKF 981562 Score = 28.1 bits (61), Expect = 6.8 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Frame = -2 Query: 27 KNIDNIILGTDLIRESFPVWKESYEEFIRDSNNYLIKEALENKFSVIVDDT-NYYNSKRR 85 K I N + ++ + F W E + I ++NN +I +NK + +D NYY Sbjct: 1578286 KLIRNSLSVSEFVDFHFLYWNEDSDSIINNNNNNIIN---KNKINTNEEDNLNYYYYPIN 1578116 Query: 86 DLMNIA-KECDTNYV 99 L N++ K T+++ Sbjct: 1578115 SLRNLSLKNSKTDWI 1578071 Database: D.discoideum_AX4/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 33,943,072 Number of sequences in database: 6 Lambda K H 0.315 0.135 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,514,913 Number of Sequences: 6 Number of extensions: 127350 Number of successful extensions: 612 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 385 Number of HSP's gapped (non-prelim): 381 length of query: 255 length of database: 11,314,357 effective HSP length: 98 effective length of query: 157 effective length of database: 11,313,769 effective search space: 1776261733 effective search space used: 1776261733 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 60 (27.7 bits)